Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.47064 * 239.99841 * 3 2 1 5 5 H 1.48507 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47332 * 119.99572 * 3 2 1 7 7 C 1.38943 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00082 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00085 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99959 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47527 * 179.97438 * 12 10 9 14 14 C 1.47447 * 110.99941 * 283.76486 * 13 12 10 15 15 C 1.54321 * 107.23035 * 236.73539 * 14 13 12 16 16 C 1.55141 * 103.17986 * 337.63204 * 15 14 13 17 17 C 1.47841 * 111.00439 * 162.91664 * 13 12 10 18 18 H 1.09003 * 110.37138 * 27.53727 * 17 13 12 19 19 C 1.52992 * 110.37526 * 265.19861 * 17 13 12 20 20 N 1.46500 * 109.47342 * 61.65976 * 19 17 13 21 21 C 1.34782 * 120.00143 * 186.61346 * 20 19 17 22 22 O 1.21283 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.50694 * 120.00213 * 180.02562 * 21 20 19 24 24 C 1.53185 * 109.54105 * 299.82194 * 23 21 20 25 25 C 1.53104 * 109.15409 * 183.23957 * 24 23 21 26 26 O 1.42905 * 109.48853 * 57.47374 * 25 24 23 27 27 C 1.42899 * 114.09799 * 298.88700 * 26 25 24 28 28 C 1.53093 * 109.41787 * 61.15755 * 27 26 25 29 29 H 0.97002 * 120.00276 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99982 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47184 * 59.99224 * 12 10 9 32 32 H 1.09001 * 109.47296 * 299.99411 * 12 10 9 33 33 H 1.08999 * 109.88418 * 117.33562 * 14 13 12 34 34 H 1.08993 * 110.02487 * 356.21918 * 14 13 12 35 35 H 1.09000 * 110.69928 * 96.09908 * 15 14 13 36 36 H 1.09002 * 110.70405 * 219.15997 * 15 14 13 37 37 H 1.08992 * 110.99618 * 153.82905 * 16 15 14 38 38 H 1.08999 * 110.98875 * 277.65022 * 16 15 14 39 39 H 1.09005 * 109.47640 * 181.65940 * 19 17 13 40 40 H 1.09004 * 109.47563 * 301.65641 * 19 17 13 41 41 H 0.96999 * 119.99739 * 6.61264 * 20 19 17 42 42 H 1.09005 * 109.54370 * 59.99138 * 23 21 20 43 43 H 1.09000 * 109.51596 * 303.05659 * 24 23 21 44 44 H 1.08998 * 109.51956 * 63.24444 * 24 23 21 45 45 H 1.08994 * 109.41109 * 297.49260 * 25 24 23 46 46 H 1.08997 * 109.48878 * 177.50245 * 25 24 23 47 47 H 1.09002 * 109.48200 * 301.17707 * 27 26 25 48 48 H 1.08998 * 109.49129 * 181.14791 * 27 26 25 49 49 H 1.08999 * 109.52504 * 182.48615 * 28 27 26 50 50 H 1.08999 * 109.52493 * 62.29187 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.7908 -6.1688 -1.3343 15 6 2.5026 -7.6239 -1.7600 16 6 2.2614 -8.3467 -0.4085 17 6 1.5400 -7.2393 0.4087 18 1 0.4799 -7.2118 0.1565 19 6 1.7260 -7.4783 1.9083 20 7 1.0989 -6.3872 2.6582 21 6 1.2508 -6.3140 3.9954 22 8 1.9064 -7.1517 4.5780 23 6 0.6053 -5.1919 4.7669 24 6 1.1428 -3.8486 4.2638 25 6 0.5430 -2.7200 5.1068 26 8 0.8602 -2.9332 6.4838 27 6 0.3410 -4.1517 7.0203 28 6 0.9343 -5.3380 6.2558 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6175 -4.9212 -0.8880 32 1 0.6170 -4.9201 0.8920 33 1 3.8670 -6.0017 -1.2900 34 1 2.3372 -5.4779 -2.0447 35 1 1.6126 -7.6727 -2.3873 36 1 3.3614 -8.0513 -2.2776 37 1 1.6209 -9.2186 -0.5409 38 1 3.2056 -8.6251 0.0593 39 1 1.2609 -8.4242 2.1860 40 1 2.7902 -7.5146 2.1413 41 1 0.5742 -5.7174 2.1923 42 1 -0.4752 -5.2277 4.6270 43 1 2.2288 -3.8333 4.3565 44 1 0.8635 -3.7128 3.2190 45 1 -0.5396 -2.7097 4.9806 46 1 0.9560 -1.7649 4.7824 47 1 -0.7443 -4.1602 6.9190 48 1 0.6083 -4.2281 8.0742 49 1 0.5061 -6.2661 6.6342 50 1 2.0159 -5.3535 6.3898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731817381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -141.937957 kcal Electronic energy + Delta-G solvation = -31417.268495 eV Core-core repulsion = 27250.036913 eV Total energy + Delta-G solvation = -4167.231583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48876 -40.66826 -39.61300 -39.12651 -35.94951 -35.70168 -34.75440 -33.43484 -32.92684 -32.10072 -31.01152 -28.32902 -27.37891 -26.18993 -25.26893 -24.47638 -22.64273 -21.86325 -21.51995 -20.95042 -20.63615 -19.83518 -18.46884 -17.64212 -17.51441 -17.26598 -16.95856 -16.61370 -16.47037 -16.44419 -16.08728 -15.71715 -15.59405 -15.50084 -15.19598 -14.83799 -14.60600 -14.35739 -14.13939 -13.84931 -13.56787 -13.52231 -13.34711 -13.12014 -12.93536 -12.75667 -12.58840 -12.40121 -12.36091 -12.27098 -12.19647 -12.12281 -12.00754 -11.72729 -11.55526 -11.49845 -11.46068 -10.96297 -10.46729 -10.31482 -10.06856 -9.96298 -9.21646 -8.43379 -5.90420 1.39362 1.42680 1.51546 1.55988 2.05555 2.19002 2.29063 2.72442 2.94831 3.22360 3.33737 3.51048 3.62622 3.70299 3.72112 3.74846 3.96261 3.99682 4.10444 4.20346 4.21941 4.26144 4.29432 4.36816 4.46812 4.49298 4.58023 4.58970 4.62592 4.66663 4.75748 4.78597 4.81856 4.91125 4.99545 5.04509 5.07432 5.09313 5.17494 5.23069 5.36409 5.44233 5.44806 5.90518 6.04502 6.14532 6.24389 6.44685 6.65272 7.17287 7.17969 7.60639 8.18088 8.73150 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006710 B = 0.005247 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4171.643525 B = 5335.458063 C = 9025.671113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.327 4.327 8 H 0.072 0.928 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.615 6.615 12 C 0.055 3.945 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.130 4.130 16 C -0.110 4.110 17 C 0.059 3.941 18 H 0.085 0.915 19 C 0.137 3.863 20 N -0.717 5.717 21 C 0.516 3.484 22 O -0.581 6.581 23 C -0.104 4.104 24 C -0.138 4.138 25 C 0.067 3.933 26 O -0.404 6.404 27 C 0.059 3.941 28 C -0.130 4.130 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.402 0.598 42 H 0.128 0.872 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -14.682 4.104 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.205 4.205 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.457 4.457 8 H 0.090 0.910 9 N -0.209 5.209 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.076 4.076 13 N -0.249 5.249 14 C -0.075 4.075 15 C -0.169 4.169 16 C -0.148 4.148 17 C -0.049 4.049 18 H 0.103 0.897 19 C 0.013 3.987 20 N -0.370 5.370 21 C 0.303 3.697 22 O -0.461 6.461 23 C -0.125 4.125 24 C -0.176 4.176 25 C -0.010 4.010 26 O -0.323 6.323 27 C -0.017 4.017 28 C -0.168 4.168 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.241 0.759 42 H 0.146 0.854 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.129 0.871 49 H 0.109 0.891 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.014 -14.858 4.953 16.777 hybrid contribution -0.487 1.232 -1.132 1.743 sum -6.501 -13.626 3.820 15.573 Atomic orbital electron populations 1.69630 1.06407 1.29138 1.50342 1.25810 0.96428 1.01708 0.96522 0.85172 0.77967 0.77633 0.78703 1.20135 1.19408 1.20104 1.19480 0.92383 0.84039 1.49803 0.90964 1.41850 1.09149 1.04413 1.65447 1.20737 0.88273 0.85815 0.82361 1.90516 1.15954 1.87790 1.55768 1.22028 0.93469 0.89461 1.02692 1.62966 1.31402 1.03097 1.27451 1.22672 0.99622 0.97230 0.87985 1.22775 1.03173 0.93170 0.97766 1.22734 1.01236 0.96866 0.93975 1.23039 0.98636 0.89528 0.93739 0.89738 1.21408 0.97825 0.89679 0.89766 1.46202 1.53538 1.30247 1.07005 1.20932 0.79964 0.86127 0.82666 1.90648 1.42241 1.43245 1.69946 1.21426 1.02709 0.92210 0.96120 1.22053 1.00581 0.94337 1.00656 1.22549 1.00253 0.97633 0.80575 1.87929 1.78026 1.40962 1.25414 1.22804 0.98451 0.82123 0.98356 1.21973 1.01746 1.00280 0.92794 0.91371 0.76982 0.90655 0.88328 0.93078 0.94133 0.89791 0.89563 0.87339 0.90854 0.89578 0.93272 0.75900 0.85373 0.93586 0.90615 0.90499 0.89475 0.90704 0.87128 0.89100 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.83 13.05 21.66 0.28 -46.54 16 2 C 0.00 -0.22 5.50 84.92 0.47 0.25 16 3 Si 0.98 42.23 29.55 68.60 2.03 44.25 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.33 -17.92 9.68 84.04 0.81 -17.11 16 8 H 0.07 4.32 7.16 -2.91 -0.02 4.30 16 9 N -0.57 -27.46 5.29 -306.99 -1.62 -29.09 16 10 C 0.44 19.93 7.62 87.66 0.67 20.60 16 11 O -0.62 -33.60 15.46 -3.05 -0.05 -33.65 16 12 C 0.06 1.73 4.92 85.56 0.42 2.16 16 13 N -0.52 -15.66 4.33 -864.22 -3.74 -19.40 16 14 C 0.05 1.52 6.03 86.65 0.52 2.05 16 15 C -0.13 -2.41 6.93 31.78 0.22 -2.19 16 16 C -0.11 -1.82 6.53 32.15 0.21 -1.61 16 17 C 0.06 1.22 2.67 45.55 0.12 1.35 16 18 H 0.08 1.40 7.81 -2.39 -0.02 1.39 16 19 C 0.14 3.28 5.40 86.38 0.47 3.74 16 20 N -0.72 -18.19 5.28 -463.06 -2.45 -20.64 16 21 C 0.52 14.88 7.16 87.65 0.63 15.51 16 22 O -0.58 -20.67 15.95 -3.04 -0.05 -20.72 16 23 C -0.10 -2.47 2.61 -11.42 -0.03 -2.50 16 24 C -0.14 -3.91 5.30 30.69 0.16 -3.75 16 25 C 0.07 1.76 6.84 72.02 0.49 2.25 16 26 O -0.40 -11.05 10.77 -148.98 -1.60 -12.66 16 27 C 0.06 1.18 6.84 72.01 0.49 1.67 16 28 C -0.13 -3.00 4.74 30.69 0.15 -2.86 16 29 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.40 17.79 7.90 -92.71 -0.73 17.06 16 31 H 0.08 2.06 7.76 -2.38 -0.02 2.04 16 32 H 0.10 2.59 4.97 -2.39 -0.01 2.58 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.26 7.37 -2.39 -0.02 1.24 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 39 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 41 H 0.40 9.26 4.87 -92.71 -0.45 8.80 16 42 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 2.22 7.68 -2.39 -0.02 2.20 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.05 1.49 8.03 -2.39 -0.02 1.47 16 Total: -1.00 -73.36 395.48 -1.63 -74.99 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.23 Total: 43.90 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 5.80 Total: 19.55 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -7.53 Total: -115.67 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.70 Total: -67.03 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -73.36 -1.63 -74.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731817381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.949 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds