Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86795 * 120.00251 * 2 1 4 4 H 1.48500 * 109.46851 * 269.99867 * 3 2 1 5 5 H 1.48504 * 109.47298 * 29.99868 * 3 2 1 6 6 H 1.48504 * 109.47195 * 150.00050 * 3 2 1 7 7 C 1.38959 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99942 * 0.28326 * 7 2 1 10 10 C 1.34776 * 120.00058 * 179.72417 * 9 7 2 11 11 O 1.21294 * 120.00161 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00161 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.47443 * 110.99778 * 75.63679 * 13 12 10 15 15 C 1.54319 * 107.23595 * 123.25849 * 14 13 12 16 16 C 1.55143 * 103.01786 * 22.28305 * 15 14 13 17 17 C 1.47846 * 111.00036 * 196.47413 * 13 12 10 18 18 H 1.08995 * 110.37735 * 332.47357 * 17 13 12 19 19 C 1.53002 * 110.36724 * 94.80996 * 17 13 12 20 20 N 1.46498 * 109.47342 * 297.98487 * 19 17 13 21 21 C 1.34774 * 120.00131 * 173.28355 * 20 19 17 22 22 O 1.21277 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.50702 * 120.00235 * 180.02562 * 21 20 19 24 24 O 1.42901 * 109.47223 * 179.97438 * 23 21 20 25 25 C 1.42894 * 113.99736 * 180.02562 * 24 23 21 26 26 C 1.53004 * 109.47258 * 180.02562 * 25 24 23 27 27 C 1.52995 * 117.49965 * 243.62315 * 26 25 24 28 28 C 1.52993 * 59.99989 * 252.50962 * 27 26 25 29 29 H 0.97000 * 120.00100 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00362 * 359.71528 * 9 7 2 31 31 H 1.09000 * 109.46596 * 299.99495 * 12 10 9 32 32 H 1.08998 * 109.47293 * 59.99424 * 12 10 9 33 33 H 1.09003 * 109.88730 * 242.66171 * 14 13 12 34 34 H 1.08994 * 109.89092 * 3.68860 * 14 13 12 35 35 H 1.08999 * 110.70945 * 140.66502 * 15 14 13 36 36 H 1.08997 * 110.70689 * 263.72837 * 15 14 13 37 37 H 1.08999 * 110.99393 * 82.43898 * 16 15 14 38 38 H 1.09001 * 110.98853 * 206.22245 * 16 15 14 39 39 H 1.09004 * 109.47483 * 57.99033 * 19 17 13 40 40 H 1.09002 * 109.46693 * 177.98873 * 19 17 13 41 41 H 0.96997 * 119.99906 * 353.29507 * 20 19 17 42 42 H 1.09005 * 109.47112 * 300.00574 * 23 21 20 43 43 H 1.09007 * 109.46680 * 60.00179 * 23 21 20 44 44 H 1.09008 * 109.47663 * 300.00100 * 25 24 23 45 45 H 1.09004 * 109.47444 * 60.00434 * 25 24 23 46 46 H 1.09004 * 115.54235 * 29.32953 * 26 25 24 47 47 H 1.08999 * 117.50038 * 359.97438 * 27 26 25 48 48 H 1.09003 * 117.49764 * 145.01515 * 27 26 25 49 49 H 1.09005 * 117.49736 * 252.50871 * 28 27 26 50 50 H 1.08998 * 117.50493 * 107.49117 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0462 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 -0.0048 10 6 1.9971 -3.5579 -0.0099 11 8 3.2101 -3.5580 -0.0102 12 6 1.2436 -4.8630 -0.0152 13 7 2.1982 -5.9795 -0.0208 14 6 2.8019 -6.1652 1.3115 15 6 2.5174 -7.6189 1.7440 16 6 2.2630 -8.3414 0.3948 17 6 1.5361 -7.2406 -0.4173 18 1 0.4783 -7.2123 -0.1562 19 6 1.7093 -7.4839 -1.9179 20 7 1.0684 -6.3993 -2.6657 21 6 1.2089 -6.3288 -4.0042 22 8 1.8655 -7.1636 -4.5898 23 6 0.5502 -5.2128 -4.7734 24 8 0.8447 -5.3544 -6.1645 25 6 0.2646 -4.3406 -6.9875 26 6 0.6431 -4.5912 -8.4487 27 6 1.5010 -3.5345 -9.1474 28 6 0.0206 -3.6777 -9.5064 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 -0.0048 31 1 0.6173 -4.9244 0.8748 32 1 0.6166 -4.9170 -0.9052 33 1 3.8777 -5.9982 1.2576 34 1 2.3541 -5.4701 2.0217 35 1 3.3816 -8.0459 2.2528 36 1 1.6346 -7.6656 2.3816 37 1 3.2025 -8.6218 -0.0813 38 1 1.6225 -9.2125 0.5331 39 1 2.7714 -7.5147 -2.1609 40 1 1.2472 -8.4336 -2.1877 41 1 0.5431 -5.7318 -2.1974 42 1 -0.5287 -5.2558 -4.6237 43 1 0.9284 -4.2542 -4.4181 44 1 -0.8203 -4.3653 -6.8843 45 1 0.6369 -3.3640 -6.6778 46 1 0.8092 -5.6341 -8.7189 47 1 1.7954 -2.6606 -8.5664 48 1 2.2319 -3.8821 -9.8776 49 1 -0.2224 -4.1194 -10.4728 50 1 -0.6586 -2.8982 -9.1614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731818263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -104.148506 kcal Electronic energy + Delta-G solvation = -29873.537475 eV Core-core repulsion = 25707.944566 eV Total energy + Delta-G solvation = -4165.592909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20931 -40.44905 -39.37337 -39.03296 -37.34823 -35.95829 -35.67195 -33.44577 -32.94031 -31.58526 -29.62641 -28.32421 -27.38655 -26.21839 -25.25083 -23.27255 -22.55399 -21.81553 -21.53904 -21.16087 -20.84809 -19.85673 -18.40554 -18.07969 -17.66226 -17.50525 -17.21778 -16.83920 -16.50094 -16.38015 -16.05408 -15.83258 -15.58745 -15.51788 -15.23354 -14.82157 -14.69049 -14.43568 -13.85432 -13.67742 -13.56132 -13.49186 -13.42190 -13.07011 -12.93816 -12.75432 -12.41087 -12.40403 -12.30816 -12.20217 -12.12930 -12.09358 -11.98844 -11.54062 -11.47911 -11.41095 -11.30399 -10.89162 -10.55930 -10.32384 -10.10365 -9.98181 -9.20599 -8.45490 -5.92946 1.37102 1.41852 1.51713 1.53170 1.77358 2.07783 2.28300 2.69780 2.74845 3.00904 3.20877 3.33961 3.61189 3.72236 3.76323 3.88382 3.93153 4.02300 4.10802 4.13324 4.15967 4.21132 4.24111 4.31078 4.31992 4.38882 4.48546 4.50448 4.60714 4.65120 4.67473 4.75833 4.79108 4.92621 4.98989 5.01251 5.10851 5.18913 5.19164 5.22851 5.37012 5.41165 5.42698 5.90535 6.01516 6.05217 6.15021 6.44611 6.63612 7.15456 7.16055 7.59265 8.16663 8.71542 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.005841 B = 0.003857 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4792.854156 B = 7257.059440 C =11491.142440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.330 4.330 8 H 0.074 0.926 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.055 3.945 13 N -0.526 5.526 14 C 0.053 3.947 15 C -0.130 4.130 16 C -0.111 4.111 17 C 0.060 3.940 18 H 0.088 0.912 19 C 0.139 3.861 20 N -0.713 5.713 21 C 0.511 3.489 22 O -0.572 6.572 23 C 0.042 3.958 24 O -0.391 6.391 25 C 0.086 3.914 26 C -0.172 4.172 27 C -0.186 4.186 28 C -0.153 4.153 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.405 0.595 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -12.837 -6.487 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.207 4.207 3 Si 0.809 3.191 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.460 4.460 8 H 0.092 0.908 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.076 4.076 13 N -0.251 5.251 14 C -0.075 4.075 15 C -0.168 4.168 16 C -0.149 4.149 17 C -0.048 4.048 18 H 0.105 0.895 19 C 0.015 3.985 20 N -0.368 5.368 21 C 0.298 3.702 22 O -0.451 6.451 23 C -0.037 4.037 24 O -0.310 6.310 25 C 0.010 3.990 26 C -0.190 4.190 27 C -0.223 4.223 28 C -0.190 4.190 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.244 0.756 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.130 0.870 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.864 -13.287 -7.327 16.267 hybrid contribution -0.629 1.592 0.907 1.938 sum -6.494 -11.695 -6.420 14.837 Atomic orbital electron populations 1.69643 1.06533 1.29151 1.50457 1.25880 0.96471 1.01919 0.96452 0.85048 0.77946 0.77518 0.78582 1.19791 1.19484 1.20164 1.19571 0.92484 0.84119 1.49814 0.90846 1.41885 1.09222 1.04496 1.65541 1.20816 0.88312 0.85903 0.82236 1.90516 1.15982 1.87831 1.55759 1.22032 0.93468 0.89205 1.02942 1.62977 1.30991 1.03116 1.28042 1.22671 0.99556 0.97242 0.88028 1.22775 1.03194 0.93140 0.97735 1.22657 1.01232 0.96958 0.94047 1.22954 0.98802 0.89495 0.93566 0.89454 1.21431 0.97722 0.89598 0.89724 1.46023 1.53568 1.31100 1.06150 1.20665 0.80498 0.86185 0.82887 1.90674 1.41821 1.42802 1.69831 1.22315 1.01762 0.97019 0.82626 1.87939 1.75595 1.51403 1.16046 1.22266 0.97897 0.90107 0.88701 1.22114 1.07273 0.97674 0.91970 1.23163 0.94875 1.00523 1.03749 1.23075 0.95566 1.01362 0.98981 0.91344 0.76930 0.90461 0.88001 0.93099 0.94139 0.89575 0.89724 0.90827 0.87320 0.93115 0.89493 0.75562 0.86743 0.89598 0.90729 0.92703 0.87899 0.88786 0.88120 0.86983 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.38 13.05 21.67 0.28 -47.10 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.98 42.16 29.55 68.60 2.03 44.19 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 8 H 0.07 4.42 7.16 -2.91 -0.02 4.39 16 9 N -0.57 -27.93 5.29 -306.98 -1.62 -29.55 16 10 C 0.44 20.03 7.60 87.66 0.67 20.70 16 11 O -0.62 -33.81 15.42 -3.07 -0.05 -33.86 16 12 C 0.06 1.72 4.92 85.56 0.42 2.15 16 13 N -0.53 -15.71 4.34 -865.18 -3.76 -19.47 16 14 C 0.05 1.53 5.99 86.65 0.52 2.05 16 15 C -0.13 -2.40 6.94 31.78 0.22 -2.18 16 16 C -0.11 -1.84 6.50 31.98 0.21 -1.63 16 17 C 0.06 1.24 2.66 45.39 0.12 1.36 16 18 H 0.09 1.41 7.81 -2.39 -0.02 1.39 16 19 C 0.14 3.35 5.39 86.38 0.47 3.82 16 20 N -0.71 -18.22 5.37 -463.06 -2.49 -20.71 16 21 C 0.51 15.71 7.91 87.66 0.69 16.41 16 22 O -0.57 -22.58 16.48 16.02 0.26 -22.31 16 23 C 0.04 1.07 6.42 71.24 0.46 1.53 16 24 O -0.39 -11.51 9.88 -129.94 -1.28 -12.80 16 25 C 0.09 1.91 6.22 71.98 0.45 2.36 16 26 C -0.17 -3.55 6.06 -10.80 -0.07 -3.61 16 27 C -0.19 -3.43 10.18 30.59 0.31 -3.12 16 28 C -0.15 -2.29 10.25 30.59 0.31 -1.98 16 29 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.40 17.98 7.90 -92.71 -0.73 17.25 16 31 H 0.08 2.08 7.78 -2.39 -0.02 2.06 16 32 H 0.10 2.61 4.97 -2.39 -0.01 2.60 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.26 7.36 -2.39 -0.02 1.24 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.54 8.11 -2.39 -0.02 1.52 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.41 8.95 5.39 -92.71 -0.50 8.45 16 42 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.05 1.19 7.88 -2.39 -0.02 1.17 16 46 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 48 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.22 409.38 -0.85 -78.07 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.28 Total: 43.03 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.06 Total: 20.50 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -7.59 Total: -116.82 kcal Atomic # 8 Polarization: -67.90 SS G_CDS: -1.07 Total: -68.97 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -77.22 -0.85 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731818263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.080 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds