Wall clock time and date at job start Sat Apr 11 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48503 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47251 * 299.99945 * 3 2 1 6 6 H 1.48495 * 109.47104 * 60.00704 * 3 2 1 7 7 C 1.38953 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00100 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00394 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99589 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47164 * 60.00204 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99938 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 N 1.46494 * 109.47283 * 185.00021 * 18 15 14 20 20 C 1.34779 * 119.99921 * 179.97438 * 19 18 15 21 21 O 1.21281 * 120.00109 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99840 * 179.97438 * 20 19 18 23 23 C 1.52299 * 115.91548 * 248.28983 * 22 20 19 24 24 C 1.52071 * 115.92762 * 180.02562 * 22 20 19 25 25 H 1.08996 * 117.25636 * 0.46385 * 24 22 20 26 26 C 1.52708 * 120.52063 * 210.74326 * 24 22 20 27 27 C 1.52879 * 110.15426 * 21.46688 * 26 24 22 28 28 C 1.53296 * 108.58398 * 305.48131 * 27 26 24 29 29 C 1.52072 * 114.63733 * 33.38619 * 22 20 19 30 30 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99965 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47162 * 59.99747 * 12 10 9 33 33 H 1.09003 * 109.46881 * 300.00032 * 12 10 9 34 34 H 1.00904 * 110.99777 * 56.04865 * 13 12 10 35 35 H 1.08999 * 109.47049 * 60.00398 * 14 13 12 36 36 H 1.08997 * 109.47646 * 300.00448 * 14 13 12 37 37 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 38 38 H 1.09005 * 109.46682 * 304.99749 * 18 15 14 39 39 H 1.08999 * 109.47221 * 64.99915 * 18 15 14 40 40 H 0.96999 * 120.00388 * 359.97438 * 19 18 15 41 41 H 1.08998 * 117.54094 * 0.85033 * 23 22 20 42 42 H 1.09005 * 117.54203 * 146.10158 * 23 22 20 43 43 H 1.09002 * 109.35837 * 141.68126 * 26 24 22 44 44 H 1.09007 * 109.35716 * 261.25934 * 26 24 22 45 45 H 1.09002 * 109.61691 * 65.21414 * 27 26 24 46 46 H 1.09007 * 109.61923 * 185.56423 * 27 26 24 47 47 H 1.09003 * 109.61568 * 194.17356 * 28 27 26 48 48 H 1.09000 * 109.61534 * 314.70759 * 28 27 26 49 49 H 1.09003 * 109.26773 * 285.89061 * 29 22 20 50 50 H 1.08997 * 109.27254 * 45.35613 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0039 14 6 1.4978 -7.2708 -0.0039 15 6 2.5227 -8.4068 -0.0051 16 1 3.1482 -8.3328 0.8845 17 8 3.3411 -8.3088 -1.1724 18 6 1.7934 -9.7518 -0.0057 19 7 2.7701 -10.8371 0.1135 20 6 2.3540 -12.1189 0.1348 21 8 1.1709 -12.3738 0.0557 22 6 3.3589 -13.2353 0.2569 23 6 3.5231 -14.1204 -0.9716 24 6 2.7883 -14.6448 0.2711 25 1 1.7065 -14.7463 0.1850 26 6 3.4908 -15.7581 1.0450 27 6 4.3949 -15.1605 2.1233 28 6 5.3513 -14.1624 1.4609 29 6 4.5799 -12.9000 1.0990 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.6166 -4.9201 -0.8919 33 1 0.6173 -4.9213 0.8881 34 1 2.8337 -5.9132 0.7771 35 1 0.8720 -7.3447 -0.8933 36 1 0.8739 -7.3458 0.8866 37 1 2.8498 -8.3669 -2.0033 38 1 1.1023 -9.7907 0.8364 39 1 1.2380 -9.8635 -0.9370 40 1 3.7163 -10.6333 0.1772 41 1 2.9219 -13.8814 -1.8489 42 1 4.5165 -14.5199 -1.1759 43 1 2.7441 -16.3990 1.5139 44 1 4.0928 -16.3520 0.3572 45 1 3.7864 -14.6461 2.8672 46 1 4.9659 -15.9551 2.6038 47 1 6.1585 -13.9160 2.1507 48 1 5.7641 -14.5994 0.5516 49 1 5.2319 -12.2313 0.5369 50 1 4.2598 -12.4032 2.0149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732656860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:47 Heat of formation + Delta-G solvation = -115.272778 kcal Electronic energy + Delta-G solvation = -28650.250298 eV Core-core repulsion = 24484.175004 eV Total energy + Delta-G solvation = -4166.075294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10930 -39.00282 -38.33770 -37.70338 -35.01745 -34.53316 -33.79014 -33.52191 -31.57057 -31.23440 -30.18710 -27.40106 -25.52771 -24.93485 -23.97057 -22.90913 -22.00125 -21.85011 -20.80260 -19.28539 -18.86164 -17.95682 -17.89678 -17.05811 -16.53316 -15.92076 -15.75731 -15.52678 -15.13064 -14.92633 -14.80777 -14.46554 -14.41821 -14.36849 -14.15576 -13.85446 -13.72224 -13.43457 -13.17310 -12.95053 -12.66804 -12.50554 -12.45169 -12.32136 -11.88378 -11.56614 -11.50941 -11.46014 -11.33514 -11.15436 -11.05731 -10.98686 -10.43003 -10.34534 -10.31579 -10.22554 -10.15469 -9.89471 -9.52382 -9.39684 -8.46859 -8.08029 -7.96396 -6.42222 -3.83007 2.20250 2.74813 3.16260 3.26858 3.34101 3.34457 3.89462 3.94787 4.07376 4.17479 4.20436 4.26673 4.32581 4.36929 4.57309 4.67409 4.72165 4.75525 4.81347 4.92655 4.99962 5.05598 5.10248 5.15350 5.23333 5.29804 5.30482 5.34965 5.40608 5.44721 5.51164 5.59700 5.63454 5.65979 5.75813 5.76658 5.83164 5.83794 5.93307 5.94295 6.09262 6.24572 7.12611 7.18494 7.50203 7.55161 7.64625 7.92166 8.06129 8.60818 9.17664 9.53810 10.05283 10.75599 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034577 B = 0.001486 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.584346 B =18842.231615 C =19213.048097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.029 3.971 15 C 0.101 3.899 16 H 0.103 0.897 17 O -0.542 6.542 18 C 0.087 3.913 19 N -0.718 5.718 20 C 0.545 3.455 21 O -0.543 6.543 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.113 4.113 25 H 0.116 0.884 26 C -0.090 4.090 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.084 4.084 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.350 0.650 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.376 0.624 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.406 0.594 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -30.941 1.978 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.082 4.082 13 N -0.290 5.290 14 C -0.101 4.101 15 C 0.041 3.959 16 H 0.121 0.879 17 O -0.347 6.347 18 C -0.037 4.037 19 N -0.370 5.370 20 C 0.332 3.668 21 O -0.420 6.420 22 C -0.147 4.147 23 C -0.193 4.193 24 C -0.132 4.132 25 H 0.134 0.866 26 C -0.127 4.127 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.122 4.122 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.223 0.777 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.242 0.758 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.282 -30.852 1.679 31.346 hybrid contribution -0.815 1.069 0.513 1.439 sum 4.467 -29.783 2.192 30.196 Atomic orbital electron populations 1.69619 1.05952 1.28054 1.50709 1.25264 0.95635 0.99734 0.97326 0.85794 0.79725 0.81101 0.77691 1.19201 1.20734 1.20788 1.19766 0.93425 0.82222 1.47468 0.87840 1.41869 1.09192 1.04610 1.64425 1.19786 0.88395 0.84694 0.84528 1.90535 1.13718 1.87025 1.55246 1.21695 0.94318 0.91063 1.01173 1.59964 1.18314 0.99200 1.51540 1.22569 0.95710 0.90329 1.01538 1.22090 0.92575 0.90766 0.90468 0.87878 1.86625 1.36697 1.95964 1.15391 1.22095 0.92002 0.86516 1.03121 1.45817 1.11146 1.05236 1.74758 1.19680 0.88599 0.83057 0.75502 1.90698 1.17548 1.83807 1.49924 1.21050 0.98316 0.91421 1.03933 1.23222 1.02568 1.01875 0.91590 1.22274 1.00155 0.91581 0.99189 0.86623 1.21096 0.98441 0.95855 0.97319 1.21579 0.97726 0.98740 0.97846 1.21485 0.97899 0.95425 1.00911 1.20749 0.93934 0.98526 0.98984 0.91929 0.77479 0.89619 0.93916 0.83032 0.90435 0.94414 0.77704 0.90525 0.90911 0.75830 0.88434 0.87685 0.91230 0.91262 0.91574 0.91591 0.91166 0.91621 0.90852 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.39 16 10 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 11 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.66 -10.27 5.99 -115.06 -0.69 -10.96 16 14 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 15 C 0.10 0.95 3.21 -26.73 -0.09 0.87 16 16 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 17 O -0.54 -5.91 13.15 -35.23 -0.46 -6.37 16 18 C 0.09 0.77 5.31 -4.04 -0.02 0.75 16 19 N -0.72 -6.18 5.40 -60.29 -0.33 -6.50 16 20 C 0.55 5.65 7.28 -10.98 -0.08 5.57 16 21 O -0.54 -7.61 16.07 5.56 0.09 -7.52 16 22 C -0.14 -1.11 2.49 -156.96 -0.39 -1.50 16 23 C -0.16 -1.07 9.27 -26.78 -0.25 -1.31 16 24 C -0.11 -0.85 5.65 -90.93 -0.51 -1.37 16 25 H 0.12 1.07 7.50 -51.93 -0.39 0.68 16 26 C -0.09 -0.50 5.83 -26.94 -0.16 -0.65 16 27 C -0.12 -0.63 5.93 -26.64 -0.16 -0.78 16 28 C -0.12 -0.59 5.67 -26.93 -0.15 -0.74 16 29 C -0.08 -0.50 4.69 -27.56 -0.13 -0.63 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 3.18 9.05 45.56 0.41 3.59 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.41 2.94 7.45 -40.82 -0.30 2.64 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.56 7.26 -51.93 -0.38 0.18 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.33 8.06 -51.92 -0.42 -0.09 16 45 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 46 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.30 7.11 -51.93 -0.37 -0.07 16 49 H 0.07 0.37 7.81 -51.93 -0.41 -0.03 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -34.34 407.22 -9.34 -43.69 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -7.51 Total: 15.91 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.32 Total: 3.62 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.35 Total: -55.70 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.29 Total: -29.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.34 -9.34 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732656860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.587 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds