Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48503 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47251 * 299.99945 * 3 2 1 6 6 H 1.48495 * 109.47104 * 60.00704 * 3 2 1 7 7 C 1.38953 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00100 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00394 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99589 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47164 * 60.00204 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99938 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 N 1.46494 * 109.47283 * 185.00021 * 18 15 14 20 20 C 1.34779 * 119.99921 * 179.97438 * 19 18 15 21 21 O 1.21281 * 120.00109 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99840 * 179.97438 * 20 19 18 23 23 C 1.52299 * 115.91548 * 248.28983 * 22 20 19 24 24 C 1.52071 * 115.92762 * 180.02562 * 22 20 19 25 25 H 1.08996 * 117.25636 * 0.46385 * 24 22 20 26 26 C 1.52708 * 120.52063 * 210.74326 * 24 22 20 27 27 C 1.52879 * 110.15426 * 21.46688 * 26 24 22 28 28 C 1.53296 * 108.58398 * 305.48131 * 27 26 24 29 29 C 1.52072 * 114.63733 * 33.38619 * 22 20 19 30 30 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99965 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47162 * 59.99747 * 12 10 9 33 33 H 1.09003 * 109.46881 * 300.00032 * 12 10 9 34 34 H 1.00904 * 110.99777 * 56.04865 * 13 12 10 35 35 H 1.08999 * 109.47049 * 60.00398 * 14 13 12 36 36 H 1.08997 * 109.47646 * 300.00448 * 14 13 12 37 37 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 38 38 H 1.09005 * 109.46682 * 304.99749 * 18 15 14 39 39 H 1.08999 * 109.47221 * 64.99915 * 18 15 14 40 40 H 0.96999 * 120.00388 * 359.97438 * 19 18 15 41 41 H 1.08998 * 117.54094 * 0.85033 * 23 22 20 42 42 H 1.09005 * 117.54203 * 146.10158 * 23 22 20 43 43 H 1.09002 * 109.35837 * 141.68126 * 26 24 22 44 44 H 1.09007 * 109.35716 * 261.25934 * 26 24 22 45 45 H 1.09002 * 109.61691 * 65.21414 * 27 26 24 46 46 H 1.09007 * 109.61923 * 185.56423 * 27 26 24 47 47 H 1.09003 * 109.61568 * 194.17356 * 28 27 26 48 48 H 1.09000 * 109.61534 * 314.70759 * 28 27 26 49 49 H 1.09003 * 109.26773 * 285.89061 * 29 22 20 50 50 H 1.08997 * 109.27254 * 45.35613 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0039 14 6 1.4978 -7.2708 -0.0039 15 6 2.5227 -8.4068 -0.0051 16 1 3.1482 -8.3328 0.8845 17 8 3.3411 -8.3088 -1.1724 18 6 1.7934 -9.7518 -0.0057 19 7 2.7701 -10.8371 0.1135 20 6 2.3540 -12.1189 0.1348 21 8 1.1709 -12.3738 0.0557 22 6 3.3589 -13.2353 0.2569 23 6 3.5231 -14.1204 -0.9716 24 6 2.7883 -14.6448 0.2711 25 1 1.7065 -14.7463 0.1850 26 6 3.4908 -15.7581 1.0450 27 6 4.3949 -15.1605 2.1233 28 6 5.3513 -14.1624 1.4609 29 6 4.5799 -12.9000 1.0990 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.6166 -4.9201 -0.8919 33 1 0.6173 -4.9213 0.8881 34 1 2.8337 -5.9132 0.7771 35 1 0.8720 -7.3447 -0.8933 36 1 0.8739 -7.3458 0.8866 37 1 2.8498 -8.3669 -2.0033 38 1 1.1023 -9.7907 0.8364 39 1 1.2380 -9.8635 -0.9370 40 1 3.7163 -10.6333 0.1772 41 1 2.9219 -13.8814 -1.8489 42 1 4.5165 -14.5199 -1.1759 43 1 2.7441 -16.3990 1.5139 44 1 4.0928 -16.3520 0.3572 45 1 3.7864 -14.6461 2.8672 46 1 4.9659 -15.9551 2.6038 47 1 6.1585 -13.9160 2.1507 48 1 5.7641 -14.5994 0.5516 49 1 5.2319 -12.2313 0.5369 50 1 4.2598 -12.4032 2.0149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732656860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -143.377503 kcal Electronic energy + Delta-G solvation = -28651.469010 eV Core-core repulsion = 24484.175004 eV Total energy + Delta-G solvation = -4167.294006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77434 -40.21773 -39.60237 -38.66755 -36.34568 -35.69943 -35.34501 -34.01225 -33.27389 -32.12118 -31.09177 -28.68234 -26.80317 -25.74487 -25.03684 -23.83937 -22.81596 -22.39049 -21.47209 -21.07964 -19.92346 -19.46527 -18.58172 -18.19862 -17.47875 -17.25652 -16.69881 -16.64791 -16.39059 -16.10298 -15.92886 -15.52921 -15.35859 -15.13876 -14.92325 -14.87503 -14.78926 -14.43400 -14.24803 -13.96779 -13.58607 -13.50695 -13.43310 -13.20601 -12.97151 -12.95363 -12.87739 -12.70639 -12.41056 -12.11514 -11.97034 -11.92631 -11.74825 -11.51888 -11.49404 -11.16235 -10.95714 -10.69480 -10.64310 -10.33169 -10.18244 -10.02011 -9.30732 -8.47400 -5.96194 1.36587 1.41994 1.42820 1.56237 2.01079 2.04838 2.29386 2.74899 2.88034 3.19973 3.41336 3.50117 3.56583 3.66279 3.72671 3.80320 3.83930 4.01937 4.09411 4.11446 4.26663 4.31030 4.34949 4.43280 4.49493 4.52297 4.55489 4.59274 4.65300 4.71000 4.73490 4.78076 4.97166 4.99855 5.03498 5.10581 5.22270 5.26787 5.29807 5.35297 5.39126 5.40753 5.50673 5.85556 6.07875 6.35477 6.45540 6.59557 6.85229 7.12268 7.15343 7.55704 8.11193 8.70175 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034577 B = 0.001486 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.584346 B =18842.231615 C =19213.048097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.673 5.673 14 C 0.031 3.969 15 C 0.115 3.885 16 H 0.105 0.895 17 O -0.559 6.559 18 C 0.094 3.906 19 N -0.708 5.708 20 C 0.540 3.460 21 O -0.586 6.586 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.121 4.121 25 H 0.091 0.909 26 C -0.086 4.086 27 C -0.121 4.121 28 C -0.117 4.117 29 C -0.082 4.082 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.344 0.656 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.385 0.615 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.414 0.586 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -31.683 2.079 32.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.067 4.067 13 N -0.306 5.306 14 C -0.099 4.099 15 C 0.054 3.946 16 H 0.123 0.877 17 O -0.365 6.365 18 C -0.030 4.030 19 N -0.359 5.359 20 C 0.327 3.673 21 O -0.467 6.467 22 C -0.151 4.151 23 C -0.183 4.183 24 C -0.140 4.140 25 H 0.109 0.891 26 C -0.124 4.124 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.120 4.120 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.888 -31.602 1.774 32.194 hybrid contribution -1.038 1.255 0.464 1.694 sum 4.850 -30.346 2.238 30.813 Atomic orbital electron populations 1.69674 1.06831 1.29243 1.50370 1.26038 0.96542 1.02407 0.96233 0.84863 0.78024 0.77067 0.78330 1.19818 1.19613 1.19560 1.19716 0.92724 0.84085 1.49927 0.90348 1.41940 1.09331 1.04727 1.65086 1.20910 0.88271 0.86222 0.82182 1.90501 1.15905 1.87964 1.56572 1.21548 0.93969 0.88103 1.03125 1.59955 1.18611 1.00434 1.51565 1.22656 0.96054 0.88382 1.02820 1.21953 0.92064 0.90357 0.90187 0.87701 1.86601 1.37650 1.95985 1.16262 1.21985 0.91865 0.86175 1.03013 1.45768 1.11591 1.04820 1.73755 1.20179 0.88509 0.83937 0.74641 1.90674 1.19437 1.84470 1.52079 1.21101 0.98415 0.90527 1.05008 1.23278 1.03268 1.00982 0.90760 1.22278 0.99157 0.92262 1.00260 0.89103 1.21107 0.98573 0.95165 0.97518 1.21585 0.97675 0.99147 0.97456 1.21496 0.97813 0.94684 1.01484 1.20778 0.93283 0.99396 0.98514 0.91297 0.76964 0.87770 0.91518 0.83779 0.89343 0.92787 0.76575 0.90660 0.91043 0.74850 0.89517 0.85513 0.91206 0.89898 0.92780 0.90261 0.90176 0.90775 0.89772 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 10 C 0.44 20.74 7.82 87.66 0.69 21.43 16 11 O -0.62 -34.77 15.78 -3.07 -0.05 -34.82 16 12 C 0.06 2.16 6.17 85.56 0.53 2.68 16 13 N -0.67 -20.11 5.99 -517.93 -3.10 -23.22 16 14 C 0.03 0.61 5.35 86.30 0.46 1.07 16 15 C 0.11 1.98 3.21 30.60 0.10 2.08 16 16 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 17 O -0.56 -11.41 13.15 -148.98 -1.96 -13.37 16 18 C 0.09 1.56 5.31 86.38 0.46 2.02 16 19 N -0.71 -11.61 5.40 -463.06 -2.50 -14.11 16 20 C 0.54 11.13 7.28 87.66 0.64 11.77 16 21 O -0.59 -16.89 16.07 -3.03 -0.05 -16.94 16 22 C -0.15 -2.18 2.49 -53.77 -0.13 -2.31 16 23 C -0.15 -1.85 9.27 30.56 0.28 -1.57 16 24 C -0.12 -1.79 5.65 -11.00 -0.06 -1.86 16 25 H 0.09 1.80 7.50 -2.39 -0.02 1.79 16 26 C -0.09 -0.85 5.83 30.46 0.18 -0.67 16 27 C -0.12 -1.05 5.93 30.65 0.18 -0.87 16 28 C -0.12 -0.89 5.67 30.46 0.17 -0.72 16 29 C -0.08 -0.84 4.69 30.06 0.14 -0.70 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 19.26 7.90 -92.70 -0.73 18.53 16 32 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.34 10.99 8.43 -89.69 -0.76 10.23 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.39 6.00 9.05 -74.06 -0.67 5.33 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 5.48 7.45 -92.71 -0.69 4.79 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.13 1.05 7.26 -2.38 -0.02 1.03 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.60 8.06 -2.38 -0.02 0.58 16 45 H 0.05 0.60 8.06 -2.39 -0.02 0.58 16 46 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.07 0.46 7.11 -2.39 -0.02 0.44 16 49 H 0.08 0.68 7.81 -2.39 -0.02 0.66 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.09 407.22 -3.92 -79.02 By element: Atomic # 1 Polarization: 46.88 SS G_CDS: -1.86 Total: 45.02 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 4.91 Total: 13.83 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -6.94 Total: -117.76 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -2.06 Total: -65.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.09 -3.92 -79.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732656860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.362 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds