Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.50277 * 300.06432 * 10 9 7 12 12 O 1.42905 * 109.47059 * 60.00240 * 11 10 9 13 13 C 1.53049 * 109.49881 * 60.16620 * 10 9 7 14 14 C 1.53042 * 109.53786 * 58.58288 * 13 10 9 15 15 C 1.53190 * 109.31367 * 61.36507 * 14 13 10 16 16 N 1.46926 * 108.77663 * 305.36726 * 15 14 13 17 17 C 1.34780 * 120.62653 * 233.58610 * 16 15 14 18 18 O 1.21284 * 119.99527 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00172 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47105 * 180.02562 * 19 17 16 21 21 H 1.09005 * 109.60242 * 54.99631 * 20 19 17 22 22 C 1.53339 * 109.60535 * 175.32405 * 20 19 17 23 23 C 1.53027 * 108.44256 * 187.14032 * 22 20 19 24 24 C 1.50178 * 110.00102 * 311.34157 * 23 22 20 25 25 O 1.21277 * 118.24763 * 197.44293 * 24 23 22 26 26 N 1.33350 * 123.50758 * 17.46343 * 24 23 22 27 27 C 1.45752 * 124.10930 * 357.80421 * 26 24 23 28 28 C 1.46928 * 118.74101 * 53.60457 * 16 15 14 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47177 * 179.97438 * 11 10 9 32 32 H 1.08996 * 109.47246 * 300.00314 * 11 10 9 33 33 H 0.96693 * 114.00489 * 180.02562 * 12 11 10 34 34 H 1.08994 * 109.46070 * 178.60185 * 13 10 9 35 35 H 1.09002 * 109.45278 * 298.56026 * 13 10 9 36 36 H 1.09004 * 109.49386 * 301.41460 * 14 13 10 37 37 H 1.09002 * 109.52080 * 181.33551 * 14 13 10 38 38 H 1.08999 * 109.58739 * 185.57493 * 15 14 13 39 39 H 1.08999 * 109.58444 * 65.15102 * 15 14 13 40 40 H 1.09002 * 109.46617 * 300.00147 * 19 17 16 41 41 H 1.08999 * 109.46768 * 60.00039 * 19 17 16 42 42 H 1.09004 * 109.67248 * 307.02031 * 22 20 19 43 43 H 1.08998 * 109.67199 * 67.54899 * 22 20 19 44 44 H 1.08997 * 109.44358 * 191.11693 * 23 22 20 45 45 H 1.09000 * 109.18091 * 71.39577 * 23 22 20 46 46 H 0.97006 * 117.94475 * 177.78192 * 26 24 23 47 47 H 1.09008 * 109.30169 * 258.73757 * 27 26 24 48 48 H 1.08998 * 109.13716 * 139.26033 * 27 26 24 49 49 H 1.08998 * 109.58746 * 186.60378 * 28 16 15 50 50 H 1.09002 * 109.70058 * 66.25240 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.9393 -3.7377 -1.2476 12 8 3.8682 -2.6517 -1.2463 13 6 2.9352 -3.7402 1.2521 14 6 2.0576 -3.6259 2.5006 15 6 1.0626 -4.7903 2.5289 16 7 0.3144 -4.8039 1.2645 17 6 -1.0334 -4.8006 1.2642 18 8 -1.6395 -4.8123 0.2137 19 6 -1.7872 -4.7822 2.5690 20 6 -3.2914 -4.7827 2.2890 21 1 -3.5449 -5.6315 1.6539 22 6 -4.0609 -4.8819 3.6116 23 6 -5.5473 -5.0605 3.2947 24 6 -5.9824 -4.0414 2.2811 25 8 -7.1695 -3.8272 2.1557 26 7 -5.1334 -3.3596 1.5114 27 6 -3.6830 -3.4818 1.5871 28 6 1.0633 -4.8216 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 3.4845 -4.6816 -1.2469 32 1 2.3138 -3.6797 -2.1384 33 1 4.4602 -2.6395 -2.0108 34 1 3.4610 -4.6948 1.2640 35 1 3.6604 -2.9265 1.2421 36 1 1.5126 -2.6821 2.4770 37 1 2.6849 -3.6615 3.3913 38 1 0.3712 -4.6600 3.3613 39 1 1.6030 -5.7299 2.6437 40 1 -1.5261 -5.6656 3.1517 41 1 -1.5218 -3.8857 3.1293 42 1 -3.7000 -5.7372 4.1829 43 1 -3.9182 -3.9682 4.1886 44 1 -6.1303 -4.9356 4.2071 45 1 -5.7104 -6.0613 2.8949 46 1 -5.5044 -2.7438 0.8601 47 1 -3.2787 -2.6362 2.1437 48 1 -3.2710 -3.4787 0.5779 49 1 0.3722 -4.7119 -0.8352 50 1 1.6036 -5.7636 -0.0934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733824049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -139.764260 kcal Electronic energy + Delta-G solvation = -31828.965674 eV Core-core repulsion = 27661.828350 eV Total energy + Delta-G solvation = -4167.137324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61915 -40.97202 -39.39386 -37.67837 -37.02056 -35.52044 -34.41503 -33.70588 -32.66828 -32.21776 -30.52401 -28.24144 -26.64036 -26.05779 -25.54544 -25.04174 -23.05181 -22.88242 -20.57675 -19.96985 -19.57112 -19.12307 -18.23440 -17.97566 -17.88029 -17.11028 -16.84576 -16.67734 -16.34000 -16.09979 -15.77815 -15.39255 -15.34225 -15.09924 -14.86219 -14.73290 -14.45963 -14.31122 -14.08031 -13.83868 -13.64758 -13.42463 -13.22322 -13.02020 -12.81364 -12.71050 -12.61268 -12.45103 -12.15938 -12.00878 -11.93351 -11.75689 -11.67581 -11.62468 -11.44417 -11.26908 -10.83672 -10.73734 -10.54112 -10.52302 -10.08241 -9.41624 -8.83271 -7.76471 -5.00186 1.47373 1.49264 1.54732 1.60980 1.78187 2.17842 2.35164 2.66163 3.46033 3.53694 3.61089 3.71406 3.74752 3.82670 3.86124 4.03330 4.08231 4.23794 4.33692 4.40880 4.43967 4.47384 4.53748 4.58391 4.60608 4.66685 4.71781 4.73414 4.78343 4.85036 4.87205 4.96262 4.98653 5.01477 5.08476 5.10353 5.19904 5.38148 5.39738 5.63230 5.68228 5.71646 5.76956 5.94071 6.37742 6.46220 6.61510 7.14207 7.16143 7.35815 7.53442 8.25846 8.48921 9.47143 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003683 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.085574 B = 7600.470010 C = 8968.713351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.091 4.091 3 Si 0.954 3.046 4 H -0.308 1.308 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.178 4.178 8 H 0.091 0.909 9 N -0.713 5.713 10 C 0.176 3.824 11 C 0.074 3.926 12 O -0.567 6.567 13 C -0.110 4.110 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.600 5.600 17 C 0.504 3.496 18 O -0.585 6.585 19 C -0.123 4.123 20 C -0.079 4.079 21 H 0.080 0.920 22 C -0.109 4.109 23 C -0.128 4.128 24 C 0.508 3.492 25 O -0.618 6.618 26 N -0.713 5.713 27 C 0.110 3.890 28 C 0.120 3.880 29 H 0.238 0.762 30 H 0.366 0.634 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.375 0.625 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.394 0.606 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -18.084 10.176 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.281 4.281 3 Si 0.787 3.213 4 H -0.236 1.236 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.310 4.310 8 H 0.109 0.891 9 N -0.351 5.351 10 C 0.085 3.915 11 C -0.006 4.006 12 O -0.372 6.372 13 C -0.149 4.149 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.332 5.332 17 C 0.295 3.705 18 O -0.466 6.466 19 C -0.162 4.162 20 C -0.099 4.099 21 H 0.099 0.901 22 C -0.146 4.146 23 C -0.167 4.167 24 C 0.297 3.703 25 O -0.502 6.502 26 N -0.361 5.361 27 C -0.014 4.014 28 C -0.004 4.004 29 H 0.047 0.953 30 H 0.197 0.803 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.222 0.778 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.160 0.840 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.228 0.772 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.848 -17.891 10.308 20.731 hybrid contribution 0.168 2.119 -1.764 2.762 sum 2.016 -15.773 8.545 18.051 Atomic orbital electron populations 1.69826 1.06192 1.24632 1.62578 1.25314 0.95972 1.00106 1.06683 0.85461 0.77032 0.81082 0.77720 1.23566 1.20967 1.21525 1.19739 0.91892 0.84149 1.35245 0.89096 1.42519 1.04621 1.00478 1.87478 1.20371 0.91157 0.86171 0.93773 1.22666 0.91069 0.89027 0.97876 1.86724 1.50789 1.50634 1.49097 1.21741 0.97593 1.00934 0.94654 1.21760 0.98081 0.98617 0.98110 1.22005 0.95048 0.99142 0.84814 1.48027 1.05390 1.72097 1.07685 1.21347 0.82145 0.74735 0.92317 1.90659 1.68271 1.52047 1.35622 1.21748 0.93061 1.07055 0.94362 1.21162 0.94299 0.96695 0.97720 0.90147 1.21744 0.91848 1.05246 0.95782 1.21672 0.98793 0.98093 0.98139 1.21078 0.85053 0.82104 0.82031 1.90709 1.18954 1.68885 1.71614 1.45635 1.07838 1.43872 1.38777 1.21636 0.78431 0.98856 1.02502 1.21551 0.93947 0.97745 0.87127 0.95276 0.80263 0.91555 0.96143 0.77758 0.90430 0.93943 0.94268 0.89616 0.87515 0.88345 0.83989 0.87638 0.86293 0.90563 0.86688 0.86659 0.77232 0.92276 0.91399 0.92044 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.58 13.06 21.65 0.28 -60.30 16 2 C -0.09 -5.23 5.50 84.86 0.47 -4.77 16 3 Si 0.95 47.74 29.55 68.60 2.03 49.77 16 4 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 5 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.18 -9.47 8.29 84.03 0.70 -8.77 16 8 H 0.09 4.82 5.30 -2.91 -0.02 4.80 16 9 N -0.71 -33.50 4.22 -302.99 -1.28 -34.77 16 10 C 0.18 6.06 0.68 3.68 0.00 6.06 16 11 C 0.07 2.36 6.08 71.98 0.44 2.80 16 12 O -0.57 -19.78 9.96 -148.98 -1.48 -21.26 16 13 C -0.11 -3.26 4.39 30.62 0.13 -3.13 16 14 C -0.13 -3.37 5.93 30.67 0.18 -3.19 16 15 C 0.11 2.08 6.34 86.36 0.55 2.63 16 16 N -0.60 -15.60 2.87 -818.90 -2.35 -17.95 16 17 C 0.50 14.07 7.45 87.66 0.65 14.73 16 18 O -0.59 -21.53 13.44 -3.04 -0.04 -21.58 16 19 C -0.12 -2.14 3.52 29.85 0.11 -2.04 16 20 C -0.08 -1.54 1.89 -10.71 -0.02 -1.56 16 21 H 0.08 1.71 7.94 -2.38 -0.02 1.69 16 22 C -0.11 -1.39 5.33 30.72 0.16 -1.22 16 23 C -0.13 -2.15 6.03 29.69 0.18 -1.97 16 24 C 0.51 14.10 7.72 87.71 0.68 14.78 16 25 O -0.62 -22.47 17.78 -3.02 -0.05 -22.53 16 26 N -0.71 -20.00 5.45 -467.32 -2.55 -22.55 16 27 C 0.11 3.01 6.11 86.49 0.53 3.54 16 28 C 0.12 3.52 5.14 86.36 0.44 3.97 16 29 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.37 19.65 7.65 -92.71 -0.71 18.94 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.37 9.41 9.12 -74.06 -0.68 8.74 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.54 6.84 -2.39 -0.02 1.52 16 36 H 0.04 1.44 7.53 -2.38 -0.02 1.42 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.42 5.93 -2.39 -0.01 1.41 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 1.23 7.94 -2.39 -0.02 1.21 16 41 H 0.11 1.82 7.66 -2.39 -0.02 1.80 16 42 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.39 11.49 8.80 -92.70 -0.82 10.67 16 47 H 0.06 1.70 8.09 -2.38 -0.02 1.68 16 48 H 0.07 2.37 6.20 -2.39 -0.01 2.35 16 49 H 0.06 2.22 7.01 -2.39 -0.02 2.20 16 50 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -82.95 383.79 -1.46 -84.41 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -1.22 Total: 44.90 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 5.20 Total: 21.86 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.89 Total: -135.57 kcal Atomic # 8 Polarization: -63.79 SS G_CDS: -1.58 Total: -65.37 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -82.95 -1.46 -84.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733824049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.357 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds