Wall clock time and date at job start Sat Apr 11 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48502 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46977 * 299.99755 * 3 2 1 6 6 H 1.48493 * 109.47379 * 60.00065 * 3 2 1 7 7 C 1.38814 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00399 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99988 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.49579 * 60.06606 * 10 9 7 12 12 O 1.42898 * 109.47085 * 304.93709 * 11 10 9 13 13 C 1.53040 * 109.49931 * 300.00265 * 10 9 7 14 14 C 1.53038 * 109.53627 * 301.41143 * 13 10 9 15 15 C 1.53199 * 109.31420 * 298.63535 * 14 13 10 16 16 N 1.46922 * 108.77480 * 54.63361 * 15 14 13 17 17 C 1.34781 * 120.63107 * 126.36657 * 16 15 14 18 18 O 1.21273 * 120.00234 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99749 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.47162 * 179.97438 * 19 17 16 21 21 H 1.09001 * 109.73992 * 54.58693 * 20 19 17 22 22 C 1.53343 * 109.60433 * 175.00041 * 20 19 17 23 23 C 1.53076 * 108.42534 * 187.28688 * 22 20 19 24 24 C 1.50181 * 109.88819 * 311.09425 * 23 22 20 25 25 O 1.21282 * 118.24432 * 197.58058 * 24 23 22 26 26 N 1.33347 * 123.50776 * 17.58989 * 24 23 22 27 27 C 1.45760 * 124.10820 * 357.76765 * 26 24 23 28 28 C 1.46924 * 118.74102 * 306.64720 * 16 15 14 29 29 H 0.97006 * 120.00078 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00428 * 359.97438 * 9 7 2 31 31 H 1.09012 * 109.47281 * 64.93531 * 11 10 9 32 32 H 1.08995 * 109.47071 * 184.93382 * 11 10 9 33 33 H 0.96706 * 113.99959 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.45829 * 181.39387 * 13 10 9 35 35 H 1.09001 * 109.44590 * 61.42706 * 13 10 9 36 36 H 1.09000 * 109.49675 * 178.68162 * 14 13 10 37 37 H 1.08999 * 109.49681 * 58.58669 * 14 13 10 38 38 H 1.08997 * 109.58429 * 294.84948 * 15 14 13 39 39 H 1.08994 * 109.58560 * 174.42228 * 15 14 13 40 40 H 1.09006 * 109.47399 * 59.99605 * 19 17 16 41 41 H 1.09002 * 109.46888 * 299.99495 * 19 17 16 42 42 H 1.08996 * 109.67899 * 67.55098 * 22 20 19 43 43 H 1.09000 * 109.70419 * 307.03338 * 22 20 19 44 44 H 1.08992 * 109.39915 * 71.22882 * 23 22 20 45 45 H 1.09004 * 109.39849 * 190.97101 * 23 22 20 46 46 H 0.97001 * 117.94803 * 177.77743 * 26 24 23 47 47 H 1.08998 * 109.29829 * 258.76568 * 27 26 24 48 48 H 1.09000 * 109.13125 * 139.28902 * 27 26 24 49 49 H 1.09006 * 109.58992 * 173.14206 * 28 16 15 50 50 H 1.09000 * 109.58765 * 293.56988 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.9366 -3.7392 1.2504 12 8 3.7867 -2.5922 1.3115 13 6 2.9381 -3.7385 -1.2488 14 6 2.0637 -3.6224 -2.4993 15 6 1.0687 -4.7869 -2.5318 16 7 0.3173 -4.8022 -1.2693 17 6 -1.0305 -4.7978 -1.2723 18 8 -1.6392 -4.8110 -0.2235 19 6 -1.7810 -4.7777 -2.5789 20 6 -3.2858 -4.7773 -2.3028 21 1 -3.5383 -3.9495 -1.6401 22 6 -4.0512 -4.6311 -3.6234 23 6 -5.5373 -4.4502 -3.3039 24 6 -5.9816 -5.5014 -2.3277 25 8 -7.1704 -5.7126 -2.2132 26 7 -5.1390 -6.2149 -1.5800 27 6 -3.6876 -6.0995 -1.6479 28 6 1.0630 -4.8160 -0.0035 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.3041 -3.7704 2.1378 32 1 3.5464 -4.6415 1.2070 33 1 4.3726 -2.5774 2.0807 34 1 3.4639 -4.6932 -1.2607 35 1 3.6632 -2.9248 -1.2358 36 1 2.6936 -3.6572 -3.3882 37 1 1.5187 -2.6788 -2.4758 38 1 1.6094 -5.7263 -2.6466 39 1 0.3794 -4.6554 -3.3657 40 1 -1.5192 -5.6607 -3.1620 41 1 -1.5136 -3.8809 -3.1377 42 1 -3.9125 -5.5265 -4.2292 43 1 -3.6841 -3.7602 -4.1665 44 1 -5.6969 -3.4629 -2.8705 45 1 -6.1185 -4.5396 -4.2217 46 1 -5.5156 -6.8506 -0.9515 47 1 -3.2874 -6.9276 -2.2328 48 1 -3.2783 -6.1406 -0.6384 49 1 0.3699 -4.7036 0.8303 50 1 1.6032 -5.7578 0.0922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733824050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:38 Heat of formation + Delta-G solvation = -139.352071 kcal Electronic energy + Delta-G solvation = -31639.705116 eV Core-core repulsion = 27472.585666 eV Total energy + Delta-G solvation = -4167.119450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.62382 -40.98210 -39.40812 -37.68128 -37.02379 -35.50915 -34.41030 -33.71937 -32.67365 -32.23206 -30.54510 -28.23815 -26.62913 -26.07419 -25.53546 -25.05423 -23.05616 -22.90122 -20.58157 -20.02102 -19.53870 -19.15407 -18.23925 -17.97271 -17.86990 -17.13222 -16.88201 -16.54319 -16.28430 -16.21229 -15.77513 -15.48609 -15.28073 -15.05931 -14.89018 -14.75137 -14.47026 -14.31111 -14.12195 -13.78110 -13.67442 -13.42629 -13.22901 -13.02195 -12.87346 -12.74206 -12.57884 -12.47088 -12.17783 -11.94688 -11.89357 -11.76241 -11.69126 -11.63189 -11.44708 -11.23729 -10.84677 -10.76021 -10.54586 -10.52134 -10.04929 -9.41798 -8.83862 -7.76312 -5.00233 1.46418 1.48422 1.57550 1.60084 1.77586 2.18070 2.36591 2.66489 3.45686 3.53507 3.59686 3.72206 3.73970 3.83044 3.86004 4.03919 4.08014 4.22947 4.33759 4.40326 4.43545 4.48176 4.52560 4.56548 4.59592 4.65853 4.68419 4.73080 4.78076 4.85595 4.89975 4.93591 4.98288 4.99825 5.08139 5.09121 5.21495 5.37095 5.39059 5.62056 5.68365 5.76625 5.79088 5.95488 6.34276 6.46306 6.61272 7.15442 7.18044 7.35646 7.53374 8.25279 8.48037 9.48103 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003315 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.451335 B = 8443.160081 C = 9485.992589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.096 4.096 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.308 1.308 7 C -0.170 4.170 8 H 0.094 0.906 9 N -0.714 5.714 10 C 0.175 3.825 11 C 0.073 3.927 12 O -0.565 6.565 13 C -0.111 4.111 14 C -0.128 4.128 15 C 0.111 3.889 16 N -0.600 5.600 17 C 0.505 3.495 18 O -0.585 6.585 19 C -0.120 4.120 20 C -0.088 4.088 21 H 0.053 0.947 22 C -0.108 4.108 23 C -0.134 4.134 24 C 0.512 3.488 25 O -0.616 6.616 26 N -0.711 5.711 27 C 0.113 3.887 28 C 0.120 3.880 29 H 0.238 0.762 30 H 0.365 0.635 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.373 0.627 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.399 0.601 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -17.798 -10.092 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.285 4.285 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.231 1.231 6 H -0.237 1.237 7 C -0.302 4.302 8 H 0.111 0.889 9 N -0.352 5.352 10 C 0.084 3.916 11 C -0.008 4.008 12 O -0.370 6.370 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.332 5.332 17 C 0.295 3.705 18 O -0.466 6.466 19 C -0.160 4.160 20 C -0.108 4.108 21 H 0.072 0.928 22 C -0.146 4.146 23 C -0.173 4.173 24 C 0.301 3.699 25 O -0.499 6.499 26 N -0.360 5.360 27 C -0.010 4.010 28 C -0.003 4.003 29 H 0.047 0.953 30 H 0.196 0.804 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.234 0.766 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.257 -17.515 -10.216 20.402 hybrid contribution 0.043 1.416 1.699 2.213 sum 2.300 -16.099 -8.517 18.357 Atomic orbital electron populations 1.69851 1.06334 1.24515 1.62996 1.25350 0.95973 1.00261 1.06947 0.85287 0.78457 0.81691 0.75806 1.19296 1.23092 1.23714 1.19833 0.91891 0.84058 1.34434 0.88871 1.42573 1.04615 1.00617 1.87387 1.20324 0.91267 0.86182 0.93825 1.22677 0.92323 0.87984 0.97788 1.86802 1.55422 1.45018 1.49772 1.21770 0.97599 1.01010 0.94663 1.21763 0.98105 0.98610 0.98121 1.22011 0.94987 0.99183 0.84854 1.48033 1.05378 1.72085 1.07685 1.21326 0.82148 0.74738 0.92296 1.90655 1.68119 1.52043 1.35781 1.21708 0.92970 1.07002 0.94341 1.21159 0.94418 0.97434 0.97774 0.92799 1.21725 0.91648 1.05201 0.95997 1.21677 0.99073 0.97438 0.99150 1.20796 0.85229 0.82355 0.81532 1.90714 1.18800 1.69899 1.70535 1.45531 1.07964 1.41625 1.40838 1.21688 0.78272 0.98079 1.02973 1.21473 0.93965 0.97840 0.87061 0.95285 0.80386 0.96028 0.91502 0.77950 0.90219 0.93971 0.89510 0.94342 0.88214 0.87568 0.84444 0.87310 0.88496 0.88522 0.88467 0.86594 0.76571 0.89026 0.90595 0.92103 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.84 13.06 21.65 0.28 -61.56 16 2 C -0.10 -5.57 5.50 84.86 0.47 -5.11 16 3 Si 0.95 47.99 29.55 68.60 2.03 50.02 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 7 C -0.17 -9.09 8.14 84.03 0.68 -8.40 16 8 H 0.09 4.95 5.29 -2.91 -0.02 4.94 16 9 N -0.71 -33.90 4.22 -303.64 -1.28 -35.18 16 10 C 0.18 6.01 0.68 3.54 0.00 6.02 16 11 C 0.07 2.31 6.09 71.98 0.44 2.74 16 12 O -0.56 -19.98 9.92 -148.98 -1.48 -21.46 16 13 C -0.11 -3.27 4.43 30.62 0.14 -3.13 16 14 C -0.13 -3.36 5.93 30.67 0.18 -3.18 16 15 C 0.11 2.06 6.34 86.37 0.55 2.61 16 16 N -0.60 -15.56 2.88 -819.74 -2.36 -17.91 16 17 C 0.50 14.12 7.46 87.66 0.65 14.77 16 18 O -0.59 -21.59 13.47 -3.01 -0.04 -21.63 16 19 C -0.12 -2.13 3.52 29.85 0.11 -2.03 16 20 C -0.09 -1.75 1.89 -10.71 -0.02 -1.77 16 21 H 0.05 1.52 7.93 -2.39 -0.02 1.50 16 22 C -0.11 -1.51 5.33 30.73 0.16 -1.35 16 23 C -0.13 -2.51 6.03 29.71 0.18 -2.33 16 24 C 0.51 13.19 7.71 87.72 0.68 13.86 16 25 O -0.62 -21.20 17.78 -3.04 -0.05 -21.25 16 26 N -0.71 -15.65 5.45 -467.31 -2.55 -18.20 16 27 C 0.11 2.18 6.11 86.49 0.53 2.71 16 28 C 0.12 3.52 5.10 86.22 0.44 3.96 16 29 H 0.24 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.36 19.94 7.64 -92.71 -0.71 19.23 16 31 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.37 9.50 9.12 -74.05 -0.68 8.83 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.51 6.97 -2.39 -0.02 1.50 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.42 7.53 -2.39 -0.02 1.40 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.41 5.93 -2.39 -0.01 1.40 16 40 H 0.14 1.22 7.91 -2.38 -0.02 1.20 16 41 H 0.11 1.90 7.69 -2.39 -0.02 1.88 16 42 H 0.10 0.91 8.13 -2.39 -0.02 0.90 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 45 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.40 8.36 8.80 -92.71 -0.82 7.54 16 47 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 48 H 0.08 1.86 6.24 -2.39 -0.01 1.85 16 49 H 0.06 2.20 7.01 -2.38 -0.02 2.18 16 50 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -84.49 383.77 -1.48 -85.97 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -1.22 Total: 41.83 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.18 Total: 19.37 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -5.90 Total: -132.86 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -1.57 Total: -64.34 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -84.49 -1.48 -85.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733824050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.383 kcal (2) G-P(sol) polarization free energy of solvation -84.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds