Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48498 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46708 * 300.00145 * 3 2 1 6 6 H 1.48498 * 109.47014 * 60.00228 * 3 2 1 7 7 C 1.38816 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99961 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00066 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.49700 * 60.00438 * 10 9 7 12 12 O 1.42903 * 109.47256 * 305.00374 * 11 10 9 13 13 C 1.53035 * 109.49806 * 299.94003 * 10 9 7 14 14 C 1.53041 * 109.54194 * 301.38070 * 13 10 9 15 15 C 1.53194 * 109.31075 * 298.63527 * 14 13 10 16 16 N 1.46932 * 108.77523 * 54.63219 * 15 14 13 17 17 C 1.34772 * 120.62810 * 126.39053 * 16 15 14 18 18 O 1.21291 * 119.99650 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00371 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.47026 * 179.97438 * 19 17 16 21 21 H 1.09001 * 109.60344 * 304.99784 * 20 19 17 22 22 C 1.53351 * 109.60123 * 184.67651 * 20 19 17 23 23 C 1.53064 * 108.42686 * 172.71438 * 22 20 19 24 24 C 1.50179 * 109.89140 * 48.89940 * 23 22 20 25 25 O 1.21279 * 118.24819 * 162.40163 * 24 23 22 26 26 N 1.33350 * 123.50734 * 342.41779 * 24 23 22 27 27 C 1.45816 * 124.16934 * 2.04524 * 26 24 23 28 28 C 1.46932 * 118.76343 * 306.41282 * 16 15 14 29 29 H 0.97005 * 119.99474 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00098 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47286 * 184.99935 * 11 10 9 32 32 H 1.09008 * 109.47201 * 64.99715 * 11 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 12 11 10 34 34 H 1.09004 * 109.46259 * 61.40023 * 13 10 9 35 35 H 1.08997 * 109.46119 * 181.35584 * 13 10 9 36 36 H 1.09002 * 109.49526 * 58.58167 * 14 13 10 37 37 H 1.08992 * 109.50050 * 178.65020 * 14 13 10 38 38 H 1.08992 * 109.59108 * 174.42028 * 15 14 13 39 39 H 1.09000 * 109.58810 * 294.70549 * 15 14 13 40 40 H 1.08996 * 109.47296 * 300.00282 * 19 17 16 41 41 H 1.09000 * 109.46778 * 60.00192 * 19 17 16 42 42 H 1.08996 * 109.67134 * 292.44823 * 22 20 19 43 43 H 1.08998 * 109.67134 * 52.98071 * 22 20 19 44 44 H 1.08996 * 109.40411 * 169.02846 * 23 22 20 45 45 H 1.09002 * 109.40125 * 288.85659 * 23 22 20 46 46 H 0.96998 * 117.95023 * 182.22667 * 26 24 23 47 47 H 1.09002 * 109.46326 * 220.85942 * 27 26 24 48 48 H 1.09002 * 109.18201 * 101.45872 * 27 26 24 49 49 H 1.08998 * 109.56348 * 293.78542 * 28 16 15 50 50 H 1.09004 * 109.61529 * 173.35416 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 2.9385 -3.7392 1.2467 12 8 3.7877 -2.5915 1.3071 13 6 2.9357 -3.7388 -1.2525 14 6 2.0591 -3.6235 -2.5016 15 6 1.0646 -4.7884 -2.5319 16 7 0.3153 -4.8034 -1.2681 17 6 -1.0324 -4.8001 -1.2688 18 8 -1.6394 -4.8122 -0.2187 19 6 -1.7852 -4.7814 -2.5741 20 6 -3.2896 -4.7820 -2.2952 21 1 -3.5435 -5.6311 -1.6606 22 6 -4.0581 -4.8809 -3.6186 23 6 -5.5445 -5.0633 -3.3024 24 6 -5.9811 -4.0418 -2.2918 25 8 -7.1683 -3.8272 -2.1686 26 7 -5.1330 -3.3579 -1.5228 27 6 -3.6818 -3.4813 -1.5934 28 6 1.0627 -4.8216 -0.0032 29 1 -0.4849 0.8401 0.0004 30 1 0.3553 -2.3880 -0.0005 31 1 3.5491 -4.6410 1.2018 32 1 2.3076 -3.7715 2.1350 33 1 4.3755 -2.5771 2.0749 34 1 3.6607 -2.9248 -1.2413 35 1 3.4620 -4.6932 -1.2649 36 1 1.5137 -2.6801 -2.4775 37 1 2.6875 -3.6579 -3.3915 38 1 0.3738 -4.6576 -3.3647 39 1 1.6053 -5.7275 -2.6497 40 1 -1.5194 -3.8849 -3.1340 41 1 -1.5237 -5.6647 -3.1569 42 1 -3.9150 -3.9670 -4.1951 43 1 -3.6967 -5.7360 -4.1897 44 1 -6.1267 -4.9407 -4.2157 45 1 -5.7090 -6.0627 -2.8996 46 1 -5.5047 -2.7408 -0.8733 47 1 -3.2675 -3.4769 -0.5852 48 1 -3.2771 -2.6356 -2.1495 49 1 1.6031 -5.7639 0.0880 50 1 0.3711 -4.7123 0.8322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733824051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -138.996702 kcal Electronic energy + Delta-G solvation = -31836.866856 eV Core-core repulsion = 27669.762815 eV Total energy + Delta-G solvation = -4167.104040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61811 -40.97132 -39.39430 -37.67663 -37.01939 -35.50355 -34.41011 -33.70844 -32.66669 -32.21504 -30.53008 -28.24759 -26.62848 -26.06364 -25.54288 -25.04392 -23.04930 -22.87911 -20.58074 -19.97221 -19.57422 -19.15039 -18.23523 -17.97322 -17.86527 -17.10839 -16.83248 -16.64768 -16.33838 -16.10271 -15.76495 -15.39429 -15.35921 -15.10268 -14.87037 -14.72724 -14.46477 -14.31684 -14.07470 -13.84066 -13.64579 -13.42349 -13.22332 -13.01866 -12.87789 -12.73906 -12.57300 -12.45543 -12.14675 -11.95234 -11.91551 -11.75857 -11.66957 -11.62340 -11.44475 -11.23091 -10.84211 -10.75206 -10.54041 -10.52215 -10.08304 -9.41554 -8.82758 -7.75959 -4.99151 1.46035 1.48525 1.57180 1.60987 1.78143 2.17904 2.34924 2.66587 3.45953 3.53528 3.60992 3.72114 3.74773 3.82918 3.86644 4.03632 4.08246 4.23274 4.33686 4.40841 4.44758 4.47965 4.53732 4.57937 4.60076 4.66629 4.71565 4.73414 4.78300 4.84853 4.87336 4.96272 4.98723 5.01455 5.08275 5.09497 5.19931 5.37547 5.39709 5.62168 5.68061 5.71517 5.76763 5.96308 6.37721 6.46773 6.61458 7.15416 7.16065 7.35831 7.54254 8.26012 8.49082 9.48195 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003684 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.946461 B = 7597.729163 C = 8956.830284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.094 4.094 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.304 1.304 6 H -0.309 1.309 7 C -0.169 4.169 8 H 0.093 0.907 9 N -0.712 5.712 10 C 0.176 3.824 11 C 0.072 3.928 12 O -0.564 6.564 13 C -0.111 4.111 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.600 5.600 17 C 0.504 3.496 18 O -0.585 6.585 19 C -0.123 4.123 20 C -0.079 4.079 21 H 0.080 0.920 22 C -0.109 4.109 23 C -0.127 4.127 24 C 0.508 3.492 25 O -0.618 6.618 26 N -0.713 5.713 27 C 0.110 3.890 28 C 0.120 3.880 29 H 0.237 0.763 30 H 0.365 0.635 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.373 0.627 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.394 0.606 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -18.262 -10.244 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.283 4.283 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.232 1.232 6 H -0.238 1.238 7 C -0.302 4.302 8 H 0.111 0.889 9 N -0.350 5.350 10 C 0.085 3.915 11 C -0.008 4.008 12 O -0.370 6.370 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.332 5.332 17 C 0.294 3.706 18 O -0.466 6.466 19 C -0.162 4.162 20 C -0.099 4.099 21 H 0.099 0.901 22 C -0.146 4.146 23 C -0.167 4.167 24 C 0.297 3.703 25 O -0.502 6.502 26 N -0.361 5.361 27 C -0.014 4.014 28 C -0.004 4.004 29 H 0.046 0.954 30 H 0.197 0.803 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.227 0.773 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.063 -18.076 -10.374 20.943 hybrid contribution 0.127 2.130 1.766 2.770 sum 2.190 -15.946 -8.608 18.253 Atomic orbital electron populations 1.69840 1.06197 1.24394 1.62967 1.25309 0.95975 1.00077 1.06979 0.85319 0.78495 0.81873 0.75742 1.19361 1.23200 1.23802 1.19817 0.91872 0.84047 1.34419 0.88948 1.42534 1.04629 1.00509 1.87364 1.20385 0.91202 0.86185 0.93757 1.22680 0.92333 0.87941 0.97832 1.86804 1.55344 1.44929 1.49923 1.21768 0.97601 1.00965 0.94697 1.21757 0.98080 0.98613 0.98102 1.22000 0.95053 0.99168 0.84810 1.48030 1.05390 1.72089 1.07693 1.21345 0.82158 0.74738 0.92316 1.90661 1.68226 1.52055 1.35676 1.21747 0.93068 1.07053 0.94360 1.21164 0.94305 0.96695 0.97716 0.90142 1.21750 0.91857 1.05232 0.95777 1.21684 0.98776 0.98043 0.98171 1.21084 0.85052 0.82132 0.81998 1.90709 1.18930 1.68956 1.71572 1.45642 1.07847 1.43684 1.38948 1.21638 0.78412 0.98854 1.02526 1.21562 0.93938 0.97765 0.87090 0.95360 0.80303 0.91587 0.96016 0.77976 0.93978 0.90311 0.94262 0.89555 0.87548 0.88311 0.87645 0.83985 0.90546 0.86309 0.86694 0.86640 0.77256 0.91371 0.92320 0.88120 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.82 13.06 21.65 0.28 -60.54 16 2 C -0.09 -5.41 5.50 84.86 0.47 -4.94 16 3 Si 0.95 47.84 29.55 68.60 2.03 49.87 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 7 C -0.17 -8.98 8.14 84.03 0.68 -8.29 16 8 H 0.09 4.89 5.29 -2.91 -0.02 4.88 16 9 N -0.71 -33.40 4.22 -303.01 -1.28 -34.68 16 10 C 0.18 6.01 0.68 3.68 0.00 6.01 16 11 C 0.07 2.30 6.09 71.98 0.44 2.73 16 12 O -0.56 -19.93 9.91 -148.98 -1.48 -21.40 16 13 C -0.11 -3.26 4.43 30.62 0.14 -3.12 16 14 C -0.13 -3.33 5.93 30.67 0.18 -3.15 16 15 C 0.11 2.06 6.34 86.36 0.55 2.60 16 16 N -0.60 -15.54 2.87 -818.89 -2.35 -17.89 16 17 C 0.50 14.05 7.45 87.66 0.65 14.71 16 18 O -0.59 -21.55 13.44 -3.06 -0.04 -21.59 16 19 C -0.12 -2.14 3.52 29.85 0.11 -2.04 16 20 C -0.08 -1.54 1.89 -10.70 -0.02 -1.56 16 21 H 0.08 1.71 7.94 -2.39 -0.02 1.69 16 22 C -0.11 -1.39 5.33 30.73 0.16 -1.22 16 23 C -0.13 -2.14 6.03 29.71 0.18 -1.96 16 24 C 0.51 14.11 7.71 87.71 0.68 14.79 16 25 O -0.62 -22.49 17.78 -3.03 -0.05 -22.55 16 26 N -0.71 -20.03 5.45 -467.18 -2.54 -22.58 16 27 C 0.11 3.02 6.12 86.48 0.53 3.55 16 28 C 0.12 3.51 5.14 86.36 0.44 3.96 16 29 H 0.24 14.69 8.31 -92.70 -0.77 13.92 16 30 H 0.37 19.63 7.65 -92.70 -0.71 18.92 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.37 9.49 9.12 -74.06 -0.68 8.81 16 34 H 0.04 1.51 6.98 -2.38 -0.02 1.49 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.43 7.53 -2.39 -0.02 1.42 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 1.40 5.93 -2.39 -0.01 1.39 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.81 7.66 -2.39 -0.02 1.80 16 41 H 0.14 1.22 7.94 -2.39 -0.02 1.20 16 42 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 43 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.39 11.50 8.80 -92.71 -0.82 10.69 16 47 H 0.07 2.38 6.19 -2.39 -0.01 2.37 16 48 H 0.06 1.69 8.09 -2.39 -0.02 1.67 16 49 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 50 H 0.06 2.21 7.01 -2.38 -0.02 2.19 16 Total: -1.00 -83.39 383.78 -1.46 -84.86 By element: Atomic # 1 Polarization: 45.65 SS G_CDS: -1.22 Total: 44.43 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 5.19 Total: 22.06 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -5.89 Total: -135.69 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.57 Total: -65.54 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -83.39 -1.46 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733824051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.139 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds