Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99424 * 2 1 4 4 H 1.48500 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47531 * 300.00494 * 3 2 1 6 6 H 1.48508 * 109.47202 * 60.00428 * 3 2 1 7 7 C 1.38947 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99733 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99682 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00177 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99966 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47144 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99924 * 174.38958 * 13 12 10 15 15 H 1.09001 * 109.47364 * 20.12749 * 14 13 12 16 16 C 1.53000 * 109.47242 * 140.13271 * 14 13 12 17 17 N 1.46497 * 109.46857 * 304.99484 * 16 14 13 18 18 C 1.34778 * 120.00176 * 180.02562 * 17 16 14 19 19 O 1.21279 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00101 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47065 * 179.97438 * 20 18 17 22 22 O 1.42903 * 112.84421 * 53.80963 * 21 20 18 23 23 C 1.53774 * 113.61934 * 282.49827 * 21 20 18 24 24 C 1.53777 * 87.08266 * 220.01924 * 23 21 20 25 25 C 1.53777 * 87.08073 * 25.43055 * 24 23 21 26 26 C 1.53003 * 109.46996 * 260.12976 * 14 13 12 27 27 C 1.53002 * 117.49764 * 14.21795 * 26 14 13 28 28 C 1.53005 * 117.49776 * 305.55971 * 26 14 13 29 29 H 0.96996 * 120.00494 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00360 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47249 * 59.99454 * 12 10 9 32 32 H 1.09004 * 109.46672 * 299.99275 * 12 10 9 33 33 H 1.00900 * 111.00167 * 298.34101 * 13 12 10 34 34 H 1.08991 * 109.47482 * 64.99667 * 16 14 13 35 35 H 1.09003 * 109.46672 * 185.00095 * 16 14 13 36 36 H 0.97002 * 120.00162 * 0.02562 * 17 16 14 37 37 H 1.08991 * 109.47174 * 299.99891 * 20 18 17 38 38 H 1.09007 * 109.47015 * 59.99892 * 20 18 17 39 39 H 0.96700 * 113.99544 * 309.66124 * 22 21 20 40 40 H 1.09005 * 113.61530 * 334.56981 * 23 21 20 41 41 H 1.09006 * 113.61312 * 105.46553 * 23 21 20 42 42 H 1.09003 * 113.61242 * 270.88042 * 24 23 21 43 43 H 1.08994 * 113.61629 * 139.98422 * 24 23 21 44 44 H 1.08997 * 113.61477 * 220.01498 * 25 24 23 45 45 H 1.09001 * 113.69120 * 89.12812 * 25 24 23 46 46 H 1.09001 * 115.55123 * 159.89039 * 26 14 13 47 47 H 1.09004 * 117.50026 * 0.02562 * 27 26 14 48 48 H 1.09008 * 117.49972 * 145.02318 * 27 26 14 49 49 H 1.08998 * 117.49937 * 214.97892 * 28 26 14 50 50 H 1.09000 * 117.49921 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8892 2.3965 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5576 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1988 -5.9794 -0.0016 14 6 1.5036 -7.2666 0.1319 15 1 0.4584 -7.1463 -0.1530 16 6 2.1654 -8.3007 -0.7810 17 7 2.1941 -7.7922 -2.1546 18 6 2.7342 -8.5385 -3.1384 19 8 3.1969 -9.6309 -2.8864 20 6 2.7643 -8.0151 -4.5512 21 6 3.4260 -9.0493 -5.4643 22 8 2.8203 -10.3402 -5.3707 23 6 4.9595 -9.0768 -5.3542 24 6 4.9873 -9.2591 -6.8809 25 6 3.6170 -8.5619 -6.9102 26 6 1.5849 -7.7419 1.5839 27 6 2.0235 -6.7227 2.6374 28 6 2.9742 -7.8461 2.2164 29 1 -0.4850 0.8400 0.0004 30 1 0.3536 -2.3907 0.0002 31 1 0.6177 -4.9205 -0.8913 32 1 0.6172 -4.9209 0.8887 33 1 2.7737 -5.9633 -0.8307 34 1 3.1841 -8.4866 -0.4410 35 1 1.5965 -9.2300 -0.7495 36 1 1.8244 -6.9183 -2.3561 37 1 1.7458 -7.8284 -4.8913 38 1 3.3338 -7.0861 -4.5825 39 1 2.7188 -10.6622 -4.4645 40 1 5.3903 -8.1332 -5.0192 41 1 5.3425 -9.9368 -4.8047 42 1 4.9536 -10.3018 -7.1968 43 1 5.7766 -8.6917 -7.3741 44 1 2.9162 -9.0061 -7.6170 45 1 3.6792 -7.4774 -7.0008 46 1 0.8409 -8.4819 1.8787 47 1 2.2537 -5.7134 2.2960 48 1 1.5683 -6.7924 3.6254 49 1 3.1441 -8.6545 2.9275 50 1 3.8303 -7.5765 1.5979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752462425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -73.084079 kcal Electronic energy + Delta-G solvation = -29889.234652 eV Core-core repulsion = 25724.988797 eV Total energy + Delta-G solvation = -4164.245855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74545 -39.37582 -38.52160 -37.73859 -35.30742 -34.59699 -34.13068 -33.43573 -31.33044 -31.05810 -29.15418 -26.22721 -25.95246 -24.46015 -23.85045 -23.06381 -21.97529 -20.84563 -19.83784 -19.56882 -19.33166 -17.98424 -17.53150 -16.94837 -16.41910 -16.17526 -15.98257 -15.77864 -15.27777 -15.06569 -15.02504 -14.58931 -14.34259 -14.18183 -13.90098 -13.70004 -13.44388 -13.18053 -13.03865 -12.55456 -12.44714 -12.30973 -11.99456 -11.80306 -11.62660 -11.57273 -11.42915 -11.35384 -11.14153 -11.07478 -11.05618 -10.71280 -10.39156 -10.28614 -10.17344 -10.01523 -9.87073 -9.80271 -9.57911 -9.36832 -8.57446 -8.18535 -8.02645 -6.47847 -3.88828 2.31122 2.83349 3.11786 3.23154 3.29929 3.82748 3.87614 3.91986 3.95207 4.20074 4.23663 4.33441 4.41364 4.60580 4.69758 4.83576 4.88089 4.94434 5.05056 5.11499 5.15500 5.18204 5.29145 5.34621 5.36932 5.39546 5.44260 5.52834 5.60464 5.66556 5.69560 5.76889 5.84931 5.86467 5.89875 5.99076 6.01512 6.11483 6.17411 6.20088 6.36381 6.64039 7.05427 7.11769 7.47231 7.49664 7.55934 7.93827 7.99936 8.54412 9.11998 9.47585 9.98625 10.69770 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.002657 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.008898 B =10536.408166 C =12757.175094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.581 6.581 12 C 0.048 3.952 13 N -0.661 5.661 14 C 0.105 3.895 15 H 0.062 0.938 16 C 0.113 3.887 17 N -0.729 5.729 18 C 0.521 3.479 19 O -0.544 6.544 20 C -0.167 4.167 21 C 0.129 3.871 22 O -0.549 6.549 23 C -0.162 4.162 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.168 4.168 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.348 0.652 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.388 0.612 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -17.190 -7.032 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.084 4.084 13 N -0.295 5.295 14 C -0.005 4.005 15 H 0.080 0.920 16 C -0.010 4.010 17 N -0.381 5.381 18 C 0.309 3.691 19 O -0.423 6.423 20 C -0.207 4.207 21 C 0.087 3.913 22 O -0.361 6.361 23 C -0.199 4.199 24 C -0.173 4.173 25 C -0.166 4.166 26 C -0.175 4.175 27 C -0.196 4.196 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.169 0.831 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.243 0.757 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.135 0.865 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.843 -17.701 -6.802 19.052 hybrid contribution -0.966 1.286 -0.169 1.617 sum 0.877 -16.415 -6.971 17.855 Atomic orbital electron populations 1.69613 1.05943 1.28123 1.50558 1.25261 0.95625 0.99744 0.97266 0.85815 0.79736 0.81144 0.77749 1.19201 1.20756 1.20711 1.19737 0.93373 0.82184 1.47556 0.87878 1.41877 1.09185 1.04629 1.64289 1.19769 0.88396 0.84602 0.84769 1.90539 1.13659 1.86998 1.55252 1.21821 0.94145 0.91077 1.01372 1.59963 1.22647 0.99900 1.47010 1.21244 0.96703 0.88897 0.93689 0.92014 1.21683 1.02652 0.97063 0.79635 1.46134 1.61567 1.21716 1.08720 1.20646 0.76590 0.84963 0.86932 1.90551 1.46756 1.21243 1.83719 1.22404 1.04727 1.01567 0.92044 1.21792 0.91610 0.83258 0.94659 1.86337 1.82388 1.32082 1.35312 1.23580 0.96509 1.02924 0.96922 1.22740 0.96939 1.01157 0.96434 1.23068 0.97994 1.00693 0.94830 1.22194 0.99001 1.03399 0.92886 1.22962 1.02525 0.97189 0.96959 1.22786 0.93468 1.00958 1.03238 0.91883 0.77511 0.93965 0.89207 0.83078 0.90111 0.90644 0.76411 0.87932 0.87321 0.75688 0.89648 0.90605 0.89890 0.91331 0.90516 0.88733 0.88105 0.86545 0.90037 0.89851 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.79 13.05 55.50 0.72 -23.07 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.03 9.68 -14.94 -0.14 -8.18 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.44 9.58 7.83 -10.98 -0.09 9.50 16 11 O -0.58 -14.83 15.90 5.55 0.09 -14.74 16 12 C 0.05 0.75 5.25 -4.97 -0.03 0.72 16 13 N -0.66 -9.09 4.26 -107.99 -0.46 -9.55 16 14 C 0.11 1.13 2.68 -67.71 -0.18 0.95 16 15 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 16 C 0.11 1.16 5.15 -4.04 -0.02 1.14 16 17 N -0.73 -6.97 4.91 -60.30 -0.30 -7.26 16 18 C 0.52 5.50 7.59 -10.98 -0.08 5.42 16 19 O -0.54 -7.13 13.59 -14.25 -0.19 -7.33 16 20 C -0.17 -1.43 5.34 -27.88 -0.15 -1.58 16 21 C 0.13 1.27 1.10 -89.81 -0.10 1.17 16 22 O -0.55 -6.57 13.39 -55.04 -0.74 -7.31 16 23 C -0.16 -1.58 7.16 -25.92 -0.19 -1.77 16 24 C -0.14 -1.17 8.02 -25.92 -0.21 -1.38 16 25 C -0.13 -1.08 7.47 -25.92 -0.19 -1.27 16 26 C -0.16 -1.69 5.78 -90.61 -0.52 -2.22 16 27 C -0.16 -2.04 9.73 -26.69 -0.26 -2.30 16 28 C -0.17 -1.96 9.59 -26.69 -0.26 -2.22 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.32 7.85 -51.93 -0.41 0.92 16 33 H 0.35 4.94 6.80 -39.29 -0.27 4.68 16 34 H 0.08 0.95 7.53 -51.93 -0.39 0.56 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.42 7.67 -40.82 -0.31 3.11 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 0.79 8.05 -51.92 -0.42 0.37 16 39 H 0.39 4.61 6.20 45.56 0.28 4.89 16 40 H 0.08 0.77 8.03 -51.93 -0.42 0.36 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.12 1.87 6.36 -51.93 -0.33 1.54 16 48 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.10 1.28 7.94 -51.93 -0.41 0.86 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -31.08 406.12 -9.90 -40.98 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -7.55 Total: 21.73 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.51 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.09 Total: -53.42 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.84 Total: -29.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.08 -9.90 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752462425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.100 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds