Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99424 * 2 1 4 4 H 1.48500 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47531 * 300.00494 * 3 2 1 6 6 H 1.48508 * 109.47202 * 60.00428 * 3 2 1 7 7 C 1.38947 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99733 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99682 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00177 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99966 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47144 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99924 * 174.38958 * 13 12 10 15 15 H 1.09001 * 109.47364 * 20.12749 * 14 13 12 16 16 C 1.53000 * 109.47242 * 140.13271 * 14 13 12 17 17 N 1.46497 * 109.46857 * 304.99484 * 16 14 13 18 18 C 1.34778 * 120.00176 * 180.02562 * 17 16 14 19 19 O 1.21279 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00101 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47065 * 179.97438 * 20 18 17 22 22 O 1.42903 * 112.84421 * 53.80963 * 21 20 18 23 23 C 1.53774 * 113.61934 * 282.49827 * 21 20 18 24 24 C 1.53777 * 87.08266 * 220.01924 * 23 21 20 25 25 C 1.53777 * 87.08073 * 25.43055 * 24 23 21 26 26 C 1.53003 * 109.46996 * 260.12976 * 14 13 12 27 27 C 1.53002 * 117.49764 * 14.21795 * 26 14 13 28 28 C 1.53005 * 117.49776 * 305.55971 * 26 14 13 29 29 H 0.96996 * 120.00494 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00360 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47249 * 59.99454 * 12 10 9 32 32 H 1.09004 * 109.46672 * 299.99275 * 12 10 9 33 33 H 1.00900 * 111.00167 * 298.34101 * 13 12 10 34 34 H 1.08991 * 109.47482 * 64.99667 * 16 14 13 35 35 H 1.09003 * 109.46672 * 185.00095 * 16 14 13 36 36 H 0.97002 * 120.00162 * 0.02562 * 17 16 14 37 37 H 1.08991 * 109.47174 * 299.99891 * 20 18 17 38 38 H 1.09007 * 109.47015 * 59.99892 * 20 18 17 39 39 H 0.96700 * 113.99544 * 309.66124 * 22 21 20 40 40 H 1.09005 * 113.61530 * 334.56981 * 23 21 20 41 41 H 1.09006 * 113.61312 * 105.46553 * 23 21 20 42 42 H 1.09003 * 113.61242 * 270.88042 * 24 23 21 43 43 H 1.08994 * 113.61629 * 139.98422 * 24 23 21 44 44 H 1.08997 * 113.61477 * 220.01498 * 25 24 23 45 45 H 1.09001 * 113.69120 * 89.12812 * 25 24 23 46 46 H 1.09001 * 115.55123 * 159.89039 * 26 14 13 47 47 H 1.09004 * 117.50026 * 0.02562 * 27 26 14 48 48 H 1.09008 * 117.49972 * 145.02318 * 27 26 14 49 49 H 1.08998 * 117.49937 * 214.97892 * 28 26 14 50 50 H 1.09000 * 117.49921 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8892 2.3965 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5576 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1988 -5.9794 -0.0016 14 6 1.5036 -7.2666 0.1319 15 1 0.4584 -7.1463 -0.1530 16 6 2.1654 -8.3007 -0.7810 17 7 2.1941 -7.7922 -2.1546 18 6 2.7342 -8.5385 -3.1384 19 8 3.1969 -9.6309 -2.8864 20 6 2.7643 -8.0151 -4.5512 21 6 3.4260 -9.0493 -5.4643 22 8 2.8203 -10.3402 -5.3707 23 6 4.9595 -9.0768 -5.3542 24 6 4.9873 -9.2591 -6.8809 25 6 3.6170 -8.5619 -6.9102 26 6 1.5849 -7.7419 1.5839 27 6 2.0235 -6.7227 2.6374 28 6 2.9742 -7.8461 2.2164 29 1 -0.4850 0.8400 0.0004 30 1 0.3536 -2.3907 0.0002 31 1 0.6177 -4.9205 -0.8913 32 1 0.6172 -4.9209 0.8887 33 1 2.7737 -5.9633 -0.8307 34 1 3.1841 -8.4866 -0.4410 35 1 1.5965 -9.2300 -0.7495 36 1 1.8244 -6.9183 -2.3561 37 1 1.7458 -7.8284 -4.8913 38 1 3.3338 -7.0861 -4.5825 39 1 2.7188 -10.6622 -4.4645 40 1 5.3903 -8.1332 -5.0192 41 1 5.3425 -9.9368 -4.8047 42 1 4.9536 -10.3018 -7.1968 43 1 5.7766 -8.6917 -7.3741 44 1 2.9162 -9.0061 -7.6170 45 1 3.6792 -7.4774 -7.0008 46 1 0.8409 -8.4819 1.8787 47 1 2.2537 -5.7134 2.2960 48 1 1.5683 -6.7924 3.6254 49 1 3.1441 -8.6545 2.9275 50 1 3.8303 -7.5765 1.5979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752462425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -95.463462 kcal Electronic energy + Delta-G solvation = -29890.205095 eV Core-core repulsion = 25724.988797 eV Total energy + Delta-G solvation = -4165.216297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.55257 -40.45849 -39.74740 -38.97151 -36.24721 -35.94424 -35.42924 -34.61974 -33.22284 -31.92658 -30.12757 -27.75740 -26.66769 -25.70909 -25.07576 -23.86270 -22.93611 -21.67419 -21.07539 -20.58501 -20.46286 -19.89315 -18.43162 -17.86872 -17.51483 -17.31004 -16.92226 -16.80467 -16.55866 -16.21667 -15.91071 -15.86280 -15.75540 -15.30679 -15.20476 -14.76233 -14.60562 -14.09743 -14.00332 -13.85247 -13.52956 -13.34597 -13.21051 -13.07665 -12.91179 -12.69096 -12.53575 -12.38538 -12.31929 -12.15999 -12.11789 -12.11553 -11.78424 -11.49256 -11.47553 -11.09670 -10.90107 -10.69034 -10.63049 -10.29467 -10.19716 -9.98466 -9.33973 -8.45277 -5.93122 1.36978 1.42972 1.50408 1.56096 2.04349 2.09417 2.29545 2.85982 2.99097 3.13799 3.22800 3.47820 3.50808 3.62548 3.70779 3.84296 3.90662 3.96717 4.11136 4.15419 4.30750 4.36405 4.39559 4.42479 4.47437 4.50188 4.53687 4.62785 4.72010 4.78636 4.78905 4.83615 4.91003 4.98002 5.03852 5.10905 5.11425 5.28387 5.31893 5.39910 5.43313 5.44309 5.56795 5.90338 6.10760 6.34776 6.37522 6.62768 6.71444 7.13598 7.15743 7.60122 8.15695 8.72151 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.002657 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.008898 B =10536.408166 C =12757.175094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.065 3.935 13 N -0.673 5.673 14 C 0.111 3.889 15 H 0.083 0.917 16 C 0.122 3.878 17 N -0.722 5.722 18 C 0.518 3.482 19 O -0.573 6.573 20 C -0.162 4.162 21 C 0.117 3.883 22 O -0.564 6.564 23 C -0.166 4.166 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.140 4.140 27 C -0.173 4.173 28 C -0.168 4.168 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.345 0.655 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.408 0.592 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.386 0.614 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.126 0.874 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -17.232 -7.615 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.507 6.507 12 C -0.067 4.067 13 N -0.307 5.307 14 C 0.001 3.999 15 H 0.101 0.899 16 C -0.002 4.002 17 N -0.374 5.374 18 C 0.306 3.694 19 O -0.454 6.454 20 C -0.201 4.201 21 C 0.075 3.925 22 O -0.376 6.376 23 C -0.204 4.204 24 C -0.172 4.172 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.211 4.211 28 C -0.205 4.205 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.166 0.834 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.244 0.756 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.240 0.760 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.144 0.856 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.118 0.882 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.535 -17.742 -7.388 19.226 hybrid contribution -0.512 1.229 0.041 1.332 sum 0.023 -16.512 -7.347 18.073 Atomic orbital electron populations 1.69665 1.06713 1.29116 1.50623 1.25958 0.96477 1.02219 0.96494 0.84939 0.78085 0.77501 0.78251 1.19899 1.19605 1.19886 1.19643 0.92579 0.84076 1.49561 0.90495 1.41933 1.09301 1.04693 1.65242 1.20879 0.88220 0.86063 0.82042 1.90513 1.15903 1.87939 1.56374 1.21649 0.93724 0.87924 1.03401 1.59895 1.22948 1.00732 1.47167 1.21285 0.97445 0.87285 0.93837 0.89920 1.21542 1.01690 0.97206 0.79810 1.46065 1.61191 1.21873 1.08303 1.21026 0.75983 0.84568 0.87787 1.90545 1.48046 1.22604 1.84232 1.22415 1.05948 1.01512 0.90265 1.22033 0.91480 0.82873 0.96090 1.86319 1.82675 1.33416 1.35226 1.23609 0.96796 1.02404 0.97593 1.22734 0.97866 1.00987 0.95573 1.23114 0.97378 1.01872 0.93526 1.22348 0.98761 1.02517 0.92301 1.22827 1.04148 0.95843 0.98242 1.22764 0.93343 1.00927 1.03503 0.91394 0.77007 0.90730 0.87941 0.83434 0.91905 0.89734 0.75558 0.86145 0.85678 0.75992 0.88902 0.92694 0.90859 0.89868 0.90715 0.86594 0.85573 0.89975 0.88892 0.88167 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.09 13.05 21.66 0.28 -47.81 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 41.88 29.55 68.60 2.03 43.91 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 8 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -27.71 5.29 -306.99 -1.62 -29.34 16 10 C 0.44 19.25 7.83 87.66 0.69 19.93 16 11 O -0.62 -32.42 15.90 -3.05 -0.05 -32.47 16 12 C 0.07 1.90 5.25 85.56 0.45 2.35 16 13 N -0.67 -17.66 4.26 -495.56 -2.11 -19.77 16 14 C 0.11 2.12 2.68 44.92 0.12 2.24 16 15 H 0.08 1.31 7.66 -2.39 -0.02 1.30 16 16 C 0.12 2.27 5.15 86.38 0.44 2.71 16 17 N -0.72 -12.49 4.91 -463.07 -2.27 -14.76 16 18 C 0.52 10.29 7.59 87.66 0.67 10.96 16 19 O -0.57 -14.89 13.59 15.91 0.22 -14.67 16 20 C -0.16 -2.45 5.34 29.85 0.16 -2.29 16 21 C 0.12 2.19 1.10 -10.27 -0.01 2.18 16 22 O -0.56 -13.41 13.39 -130.04 -1.74 -15.15 16 23 C -0.17 -3.18 7.16 31.12 0.22 -2.96 16 24 C -0.13 -2.19 8.02 31.12 0.25 -1.94 16 25 C -0.12 -1.82 7.47 31.12 0.23 -1.59 16 26 C -0.14 -2.72 5.78 -10.79 -0.06 -2.78 16 27 C -0.17 -4.28 9.73 30.62 0.30 -3.98 16 28 C -0.17 -3.77 9.59 30.62 0.29 -3.48 16 29 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.40 18.12 7.90 -92.71 -0.73 17.39 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 2.80 7.85 -2.39 -0.02 2.78 16 33 H 0.34 9.45 6.80 -89.69 -0.61 8.84 16 34 H 0.06 1.43 7.53 -2.39 -0.02 1.42 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.41 5.97 7.67 -92.71 -0.71 5.25 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 1.50 8.05 -2.38 -0.02 1.48 16 39 H 0.39 9.30 6.20 -74.06 -0.46 8.84 16 40 H 0.09 1.60 8.03 -2.38 -0.02 1.58 16 41 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 1.23 8.10 -2.39 -0.02 1.21 16 46 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.08 2.65 6.36 -2.38 -0.02 2.63 16 48 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.08 2.05 7.94 -2.39 -0.02 2.03 16 Total: -1.00 -68.94 406.12 -1.77 -70.71 By element: Atomic # 1 Polarization: 56.85 SS G_CDS: -1.52 Total: 55.33 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.03 Total: 4.02 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -5.73 Total: -111.68 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -1.57 Total: -62.29 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -68.94 -1.77 -70.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752462425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.758 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds