Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48503 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46951 * 300.00130 * 3 2 1 6 6 H 1.48493 * 109.47442 * 60.00145 * 3 2 1 7 7 C 1.38808 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00432 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00017 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47275 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47663 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00392 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00352 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00166 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.52074 * 59.91828 * 15 13 12 17 17 C 1.53039 * 109.49789 * 299.83901 * 15 13 12 18 18 C 1.53041 * 109.53842 * 178.68027 * 17 15 13 19 19 C 1.52763 * 109.38097 * 61.24066 * 18 17 15 20 20 N 1.46920 * 109.00823 * 305.58887 * 19 18 17 21 21 C 1.34777 * 120.62883 * 233.58376 * 20 19 18 22 22 O 1.21289 * 119.99867 * 179.71992 * 21 20 19 23 23 C 1.50695 * 120.00221 * 359.72247 * 21 20 19 24 24 H 1.09007 * 110.33135 * 302.74683 * 23 21 20 25 25 C 1.54472 * 110.37494 * 64.99727 * 23 21 20 26 26 C 1.54505 * 104.06681 * 142.81177 * 25 23 21 27 27 C 1.54487 * 104.06179 * 0.02562 * 26 25 23 28 28 O 1.44421 * 104.79872 * 336.02098 * 27 26 25 29 29 C 1.46929 * 118.74119 * 53.30789 * 20 19 18 30 30 H 0.97001 * 120.00295 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99634 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47390 * 60.00145 * 10 9 7 33 33 H 1.08997 * 109.47183 * 299.99477 * 10 9 7 34 34 H 1.09003 * 109.47346 * 59.99563 * 11 10 9 35 35 H 1.09002 * 109.46934 * 299.99890 * 11 10 9 36 36 H 0.97010 * 119.99636 * 359.97438 * 12 11 10 37 37 H 1.08997 * 109.46012 * 298.70118 * 17 15 13 38 38 H 1.09001 * 109.45926 * 58.66221 * 17 15 13 39 39 H 1.09002 * 109.49850 * 181.31550 * 18 17 15 40 40 H 1.08995 * 109.49557 * 301.38443 * 18 17 15 41 41 H 1.08999 * 109.50696 * 185.70217 * 19 18 17 42 42 H 1.09001 * 109.43068 * 65.42600 * 19 18 17 43 43 H 1.09003 * 110.51251 * 24.16654 * 25 23 21 44 44 H 1.08997 * 110.51471 * 261.46110 * 25 23 21 45 45 H 1.09003 * 110.51737 * 241.36166 * 26 25 23 46 46 H 1.08999 * 110.63305 * 118.70297 * 26 25 23 47 47 H 1.08997 * 110.37332 * 94.85398 * 27 26 25 48 48 H 1.09004 * 110.37288 * 217.19057 * 27 26 25 49 49 H 1.09004 * 109.58533 * 66.43463 * 29 20 19 50 50 H 1.09003 * 109.58649 * 186.85407 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7964 -6.0884 -0.0006 13 6 1.1225 -7.2556 -0.0005 14 8 -0.0903 -7.2557 -0.0004 15 6 1.8761 -8.5608 -0.0004 16 1 2.5042 -8.6187 0.8885 17 6 2.7530 -8.6443 -1.2518 18 6 3.5435 -9.9547 -1.2363 19 6 2.5716 -11.1332 -1.2470 20 7 1.6271 -10.9846 -0.1315 21 6 1.4523 -11.9822 0.7578 22 8 0.6733 -11.8453 1.6773 23 6 2.2248 -13.2675 0.6097 24 1 2.0345 -13.7135 -0.3666 25 6 3.7364 -13.0114 0.7985 26 6 4.2379 -14.2624 1.5538 27 6 2.9699 -15.1269 1.7315 28 8 1.8725 -14.1907 1.6628 29 6 0.8812 -9.7256 -0.0003 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6848 -3.7145 0.8894 33 1 2.6847 -3.7145 -0.8905 34 1 0.4375 -4.7618 -0.8914 35 1 0.4369 -4.7622 0.8886 36 1 2.7664 -6.0884 -0.0002 37 1 2.1223 -8.6112 -2.1401 38 1 3.4455 -7.8027 -1.2668 39 1 4.1853 -10.0028 -2.1160 40 1 4.1563 -9.9992 -0.3360 41 1 3.1272 -12.0641 -1.1339 42 1 2.0249 -11.1438 -2.1899 43 1 3.9001 -12.1139 1.3951 44 1 4.2326 -12.9243 -0.1681 45 1 4.6494 -13.9836 2.5239 46 1 4.9829 -14.7950 0.9627 47 1 2.8945 -15.8596 0.9281 48 1 2.9833 -15.6255 2.7008 49 1 0.1936 -9.6190 -0.8394 50 1 0.3216 -9.7281 0.9352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752923687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -104.492461 kcal Electronic energy + Delta-G solvation = -29578.202626 eV Core-core repulsion = 25412.594802 eV Total energy + Delta-G solvation = -4165.607824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.18491 -40.01848 -38.86593 -37.36431 -35.72816 -34.02942 -33.58069 -32.56809 -31.81888 -31.18892 -30.03042 -27.79143 -26.10207 -24.84263 -23.78142 -23.17257 -22.07711 -21.90617 -21.47704 -20.12138 -19.46686 -18.11651 -17.35442 -17.03062 -16.95438 -16.43449 -15.87844 -15.70034 -15.58650 -15.08270 -14.96291 -14.84639 -14.55510 -14.45955 -14.30228 -13.85603 -13.68088 -13.37058 -13.24872 -13.16698 -13.03518 -12.79732 -12.38252 -12.24831 -11.96354 -11.85226 -11.59898 -11.48264 -11.40912 -11.20711 -11.12976 -11.01682 -10.84423 -10.82765 -10.49928 -10.10662 -9.96989 -9.86605 -9.68331 -9.05748 -9.00672 -8.85547 -7.01393 -5.81428 -3.12372 2.21153 2.29018 2.64384 3.23300 3.40698 3.44854 3.46552 3.48538 3.82277 4.00931 4.13948 4.27925 4.32360 4.39599 4.47847 4.53124 4.55834 4.57614 4.65274 4.75697 4.90269 4.98751 4.99316 5.10423 5.12516 5.22969 5.29073 5.33809 5.37679 5.43560 5.46131 5.48522 5.50944 5.55711 5.74984 5.76333 5.83611 5.93957 6.00980 6.12851 6.23163 6.45303 6.67548 6.70976 6.95777 7.55662 7.64344 7.80655 8.26105 8.36084 9.47390 10.02129 10.36695 11.41118 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029052 B = 0.001716 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.559130 B =16311.505457 C =16593.964116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.720 5.720 13 C 0.518 3.482 14 O -0.538 6.538 15 C -0.121 4.121 16 H 0.101 0.899 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.095 3.905 20 N -0.610 5.610 21 C 0.520 3.480 22 O -0.514 6.514 23 C 0.059 3.941 24 H 0.095 0.905 25 C -0.147 4.147 26 C -0.154 4.154 27 C 0.041 3.959 28 O -0.344 6.344 29 C 0.133 3.867 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.066 -33.034 -3.599 35.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.372 5.372 13 C 0.302 3.698 14 O -0.414 6.414 15 C -0.144 4.144 16 H 0.119 0.881 17 C -0.151 4.151 18 C -0.172 4.172 19 C -0.028 4.028 20 N -0.345 5.345 21 C 0.306 3.694 22 O -0.388 6.388 23 C -0.003 4.003 24 H 0.113 0.887 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.036 4.036 28 O -0.262 6.262 29 C 0.011 3.989 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.671 -32.833 -2.946 34.970 hybrid contribution 0.921 1.042 -0.190 1.404 sum 12.592 -31.791 -3.136 34.337 Atomic orbital electron populations 1.69677 1.05153 1.25758 1.57177 1.24786 0.95568 0.97841 1.02641 0.86078 0.78696 0.83878 0.77250 1.20527 1.21766 1.21757 1.19234 0.91058 0.83853 1.43424 0.90981 1.42197 1.06022 0.99566 1.89681 1.20748 0.93479 0.85723 0.98351 1.21598 0.95464 0.81648 1.02647 1.45922 1.10391 1.05978 1.74871 1.20278 0.88037 0.85053 0.76399 1.90742 1.13838 1.87582 1.49259 1.21663 0.98409 0.93148 1.01132 0.88099 1.21543 0.98390 0.98236 0.96931 1.21853 0.97796 0.94149 1.03377 1.21929 0.91317 0.99659 0.89875 1.48011 1.43262 1.15463 1.27807 1.20207 0.82815 0.84510 0.81846 1.90763 1.35860 1.80617 1.31522 1.22844 0.94128 0.89806 0.93485 0.88750 1.23052 0.93352 0.99994 1.02038 1.22962 0.98583 0.95887 1.01793 1.23522 0.85077 0.92189 1.02841 1.89300 1.41458 1.41291 1.54141 1.21366 0.92500 0.79806 1.05221 0.93387 0.77987 0.95852 0.95849 0.91215 0.91234 0.76711 0.90702 0.90527 0.89792 0.91026 0.89260 0.90704 0.89899 0.89167 0.90178 0.89950 0.91838 0.88469 0.90044 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 10 C 0.15 2.79 6.37 -4.04 -0.03 2.77 16 11 C 0.11 1.86 5.79 -4.04 -0.02 1.83 16 12 N -0.72 -9.30 5.44 -60.29 -0.33 -9.63 16 13 C 0.52 6.97 7.16 -10.98 -0.08 6.89 16 14 O -0.54 -9.61 15.92 5.56 0.09 -9.52 16 15 C -0.12 -1.13 2.68 -91.65 -0.25 -1.38 16 16 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.11 -0.72 5.08 -26.69 -0.14 -0.86 16 18 C -0.13 -0.54 6.06 -26.83 -0.16 -0.70 16 19 C 0.09 0.44 5.96 -3.93 -0.02 0.41 16 20 N -0.61 -5.26 2.98 -173.03 -0.52 -5.77 16 21 C 0.52 5.72 7.02 -10.99 -0.08 5.64 16 22 O -0.51 -8.28 15.97 -13.66 -0.22 -8.50 16 23 C 0.06 0.45 2.77 -27.11 -0.08 0.37 16 24 H 0.09 0.50 7.85 -51.92 -0.41 0.09 16 25 C -0.15 -0.68 5.52 -25.17 -0.14 -0.82 16 26 C -0.15 -0.62 7.09 -25.16 -0.18 -0.79 16 27 C 0.04 0.23 7.63 37.94 0.29 0.52 16 28 O -0.34 -3.54 10.91 -54.44 -0.59 -4.13 16 29 C 0.13 1.45 5.07 -3.71 -0.02 1.43 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 10.38 7.67 -40.82 -0.31 10.07 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.40 3.94 7.89 -40.82 -0.32 3.62 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.43 7.54 -51.93 -0.39 0.04 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.23 3.97 -51.93 -0.21 0.02 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 44 H 0.09 0.17 6.54 -51.93 -0.34 -0.17 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 50 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -37.51 396.70 -9.57 -47.08 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.21 Total: 5.65 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.14 Total: 7.92 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.45 Total: -61.68 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.72 Total: -22.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.51 -9.57 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752923687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.410 kcal (2) G-P(sol) polarization free energy of solvation -37.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds