Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47310 * 300.00116 * 3 2 1 6 6 H 1.48502 * 109.47200 * 60.00145 * 3 2 1 7 7 C 1.38948 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00197 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00216 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99590 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00614 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47438 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00089 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46937 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47070 * 60.00391 * 15 14 13 17 17 O 1.42898 * 109.47113 * 300.00260 * 15 14 13 18 18 C 1.52997 * 109.46817 * 180.02562 * 15 14 13 19 19 N 1.46497 * 109.47195 * 184.99778 * 18 15 14 20 20 C 1.34777 * 120.00267 * 179.97438 * 19 18 15 21 21 O 1.21275 * 120.00076 * 0.02562 * 20 19 18 22 22 C 1.50705 * 120.00137 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47065 * 180.02562 * 22 20 19 24 24 H 1.08995 * 109.35727 * 55.27884 * 23 22 20 25 25 C 1.50073 * 109.35924 * 295.69446 * 23 22 20 26 26 C 1.29442 * 124.07180 * 222.66269 * 25 23 22 27 27 C 1.50067 * 124.08187 * 0.46789 * 26 25 23 28 28 C 1.53032 * 110.14417 * 342.86839 * 27 26 25 29 29 C 1.53024 * 109.35879 * 175.00670 * 23 22 20 30 30 H 0.97006 * 120.00308 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00414 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46820 * 60.00011 * 12 10 9 33 33 H 1.08997 * 109.47533 * 300.00365 * 12 10 9 34 34 H 1.00900 * 110.99739 * 56.05307 * 13 12 10 35 35 H 1.09002 * 109.46463 * 60.00817 * 14 13 12 36 36 H 1.08996 * 109.47065 * 300.00445 * 14 13 12 37 37 H 0.96698 * 113.99898 * 299.99778 * 17 15 14 38 38 H 1.09001 * 109.47630 * 305.00128 * 18 15 14 39 39 H 1.09004 * 109.47346 * 65.00258 * 18 15 14 40 40 H 0.96999 * 120.00041 * 0.02562 * 19 18 15 41 41 H 1.08993 * 109.47458 * 300.00863 * 22 20 19 42 42 H 1.09004 * 109.46569 * 60.01116 * 22 20 19 43 43 H 1.07994 * 117.96293 * 42.64016 * 25 23 22 44 44 H 1.08005 * 117.95760 * 180.44750 * 26 25 23 45 45 H 1.09001 * 109.35730 * 222.66664 * 27 26 25 46 46 H 1.09001 * 109.35937 * 103.07435 * 27 26 25 47 47 H 1.08995 * 109.64459 * 289.75208 * 28 27 26 48 48 H 1.09002 * 109.81688 * 169.21847 * 28 27 26 49 49 H 1.09011 * 109.63804 * 289.32862 * 29 23 22 50 50 H 1.09001 * 109.64394 * 49.95522 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.4982 -7.2708 0.0015 15 6 2.5232 -8.4067 0.0014 16 1 3.1486 -8.3318 0.8909 17 8 3.3416 -8.3096 -1.1660 18 6 1.7938 -9.7517 0.0019 19 7 2.7706 -10.8369 0.1221 20 6 2.3546 -12.1186 0.1445 21 8 1.1717 -12.3737 0.0647 22 6 3.3595 -13.2350 0.2675 23 6 2.6301 -14.5799 0.2682 24 1 2.0090 -14.6545 -0.6243 25 6 1.7587 -14.6726 1.4865 26 6 1.6496 -15.7328 2.2211 27 6 2.3870 -17.0141 1.9632 28 6 2.9224 -17.0347 0.5297 29 6 3.6574 -15.7141 0.2676 30 1 -0.4851 0.8401 0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9208 -0.8886 33 1 0.6175 -4.9205 0.8913 34 1 2.8338 -5.9124 0.7813 35 1 0.8724 -7.3455 -0.8878 36 1 0.8742 -7.3450 0.8922 37 1 2.8503 -8.3686 -1.9968 38 1 1.1027 -9.7900 0.8440 39 1 1.2385 -9.8643 -0.9292 40 1 3.7167 -10.6329 0.1863 41 1 4.0499 -13.1968 -0.5749 42 1 3.9154 -13.1223 1.1984 43 1 1.1873 -13.8005 1.7679 44 1 0.9869 -15.6926 3.0730 45 1 1.7099 -17.8560 2.1080 46 1 3.2198 -17.0986 2.6612 47 1 2.0930 -17.1375 -0.1698 48 1 3.6126 -17.8691 0.4050 49 1 4.1545 -15.7575 -0.7016 50 1 4.3936 -15.5421 1.0529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753914684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -154.992996 kcal Electronic energy + Delta-G solvation = -28040.019913 eV Core-core repulsion = 23872.222221 eV Total energy + Delta-G solvation = -4167.797692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08337 -40.19325 -39.38503 -38.67329 -36.32721 -35.66269 -35.21784 -33.63596 -33.27103 -31.86598 -31.34924 -29.06473 -27.83321 -26.37155 -24.55974 -23.25166 -22.92687 -22.76114 -21.22167 -21.01771 -19.91410 -18.84383 -18.32547 -18.03310 -17.45607 -17.35204 -16.88270 -16.62053 -16.46314 -16.25846 -15.97994 -15.95535 -15.31477 -15.11276 -15.02273 -14.67931 -14.62263 -14.31179 -13.99794 -13.77529 -13.54978 -13.48337 -13.35363 -13.20170 -13.17200 -12.97621 -12.95786 -12.70030 -12.40951 -12.35894 -12.11478 -11.94647 -11.71796 -11.51782 -11.42995 -11.16830 -10.99809 -10.64245 -10.32730 -10.08949 -10.01861 -9.86826 -9.30326 -8.47296 -5.96061 1.36531 1.41996 1.42343 1.56227 1.68669 2.04827 2.15132 2.30048 2.90337 3.20152 3.43318 3.58074 3.70334 3.81503 3.82860 3.88941 4.01166 4.07856 4.13047 4.29569 4.31796 4.41214 4.44615 4.50393 4.51521 4.54656 4.55956 4.69166 4.70837 4.74044 4.82284 4.86319 4.90938 5.06382 5.08383 5.10913 5.23476 5.40476 5.41033 5.44255 5.51150 5.82176 5.86003 6.08148 6.09406 6.36023 6.56970 6.59716 6.87402 7.12411 7.28860 7.55817 8.11314 8.70306 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044999 B = 0.001319 C = 0.001303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.093318 B =21215.530594 C =21481.620594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.673 5.673 14 C 0.030 3.970 15 C 0.114 3.886 16 H 0.104 0.896 17 O -0.559 6.559 18 C 0.096 3.904 19 N -0.717 5.717 20 C 0.507 3.493 21 O -0.582 6.582 22 C -0.128 4.128 23 C -0.041 4.041 24 H 0.067 0.933 25 C -0.152 4.152 26 C -0.168 4.168 27 C -0.091 4.091 28 C -0.122 4.122 29 C -0.112 4.112 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.343 0.657 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.385 0.615 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.415 0.585 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -33.222 1.996 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.067 4.067 13 N -0.306 5.306 14 C -0.100 4.100 15 C 0.054 3.946 16 H 0.122 0.878 17 O -0.365 6.365 18 C -0.029 4.029 19 N -0.370 5.370 20 C 0.295 3.705 21 O -0.462 6.462 22 C -0.167 4.167 23 C -0.060 4.060 24 H 0.086 0.914 25 C -0.170 4.170 26 C -0.186 4.186 27 C -0.127 4.127 28 C -0.159 4.159 29 C -0.149 4.149 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.252 0.748 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.109 -33.161 1.699 33.457 hybrid contribution -1.071 1.323 0.654 1.824 sum 3.038 -31.838 2.353 32.069 Atomic orbital electron populations 1.69674 1.06837 1.29242 1.50398 1.26027 0.96523 1.02382 0.96230 0.84876 0.78060 0.77101 0.78331 1.19781 1.19612 1.19570 1.19712 0.92716 0.84081 1.49902 0.90357 1.41937 1.09324 1.04723 1.65081 1.20913 0.88277 0.86228 0.82191 1.90501 1.15896 1.87965 1.56569 1.21543 0.93977 0.88127 1.03098 1.59961 1.18603 1.00449 1.51541 1.22671 0.96132 0.88459 1.02713 1.21954 0.92006 0.90514 0.90128 0.87779 1.86599 1.37653 1.96005 1.16265 1.21902 0.91938 0.86294 1.02764 1.45898 1.11496 1.05183 1.74380 1.21281 0.89973 0.84434 0.74808 1.90693 1.19869 1.84380 1.51248 1.21752 0.97428 0.91125 1.06394 1.19811 0.95718 0.93965 0.96507 0.91443 1.22142 0.99661 0.98163 0.97017 1.22244 1.00747 0.95719 0.99893 1.20488 0.99665 0.95039 0.97547 1.21621 1.00140 0.98011 0.96159 1.21675 0.96994 0.93238 1.03040 0.91299 0.76973 0.87787 0.91562 0.83806 0.89418 0.92916 0.76593 0.90995 0.91229 0.74824 0.86115 0.87027 0.89728 0.88398 0.90725 0.89990 0.92709 0.90037 0.90165 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.42 5.29 -306.99 -1.62 -31.04 16 10 C 0.44 20.72 7.82 87.66 0.69 21.40 16 11 O -0.62 -34.73 15.78 -3.08 -0.05 -34.78 16 12 C 0.06 2.15 6.17 85.56 0.53 2.68 16 13 N -0.67 -20.06 5.99 -517.94 -3.10 -23.16 16 14 C 0.03 0.59 5.35 86.30 0.46 1.05 16 15 C 0.11 1.92 3.21 30.59 0.10 2.01 16 16 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 17 O -0.56 -11.11 13.15 -148.98 -1.96 -13.07 16 18 C 0.10 1.49 5.31 86.38 0.46 1.95 16 19 N -0.72 -10.12 5.50 -463.06 -2.55 -12.67 16 20 C 0.51 8.80 7.46 87.66 0.65 9.46 16 21 O -0.58 -15.06 14.24 -3.01 -0.04 -15.10 16 22 C -0.13 -1.35 5.14 29.85 0.15 -1.20 16 23 C -0.04 -0.57 2.12 -11.73 -0.02 -0.59 16 24 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 25 C -0.15 -2.66 8.41 27.04 0.23 -2.43 16 26 C -0.17 -2.53 9.80 27.04 0.27 -2.27 16 27 C -0.09 -0.95 6.12 29.66 0.18 -0.77 16 28 C -0.12 -1.14 6.01 30.74 0.18 -0.96 16 29 C -0.11 -0.99 5.30 30.73 0.16 -0.83 16 30 H 0.28 13.97 8.31 -92.70 -0.77 13.19 16 31 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 32 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.34 10.97 8.43 -89.69 -0.76 10.21 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.39 5.80 9.04 -74.06 -0.67 5.13 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.42 4.32 8.47 -92.71 -0.79 3.53 16 41 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.08 1.90 6.47 -2.91 -0.02 1.88 16 44 H 0.10 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 50 H 0.08 0.56 8.10 -2.39 -0.02 0.54 16 Total: -1.00 -75.43 411.14 -3.67 -79.09 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -1.97 Total: 44.04 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.32 Total: 11.07 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.99 Total: -116.24 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -2.05 Total: -62.95 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.43 -3.67 -79.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753914684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.899 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds