Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47480 * 300.00130 * 3 2 1 6 6 H 1.48497 * 109.47080 * 60.00285 * 3 2 1 7 7 C 1.38942 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00564 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00326 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99549 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46661 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.47465 * 305.00164 * 15 14 13 17 17 O 1.42904 * 109.47221 * 65.00566 * 15 14 13 18 18 C 1.53003 * 109.47015 * 184.99888 * 15 14 13 19 19 N 1.46500 * 109.47377 * 180.02562 * 18 15 14 20 20 C 1.34779 * 119.99877 * 180.02562 * 19 18 15 21 21 O 1.21280 * 120.00034 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.99746 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47233 * 180.02562 * 22 20 19 24 24 H 1.09008 * 109.35697 * 305.00306 * 23 22 20 25 25 C 1.50067 * 109.36205 * 64.71885 * 23 22 20 26 26 C 1.29447 * 124.07590 * 137.35867 * 25 23 22 27 27 C 1.50064 * 124.07401 * 359.51904 * 26 25 23 28 28 C 1.53021 * 110.14853 * 17.12668 * 27 26 25 29 29 C 1.53015 * 109.36104 * 185.27683 * 23 22 20 30 30 H 0.97010 * 119.99812 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99274 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47155 * 60.00029 * 12 10 9 33 33 H 1.08997 * 109.47111 * 299.99951 * 12 10 9 34 34 H 1.00902 * 111.00533 * 56.04452 * 13 12 10 35 35 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 36 36 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 37 37 H 0.96695 * 113.99906 * 59.99617 * 17 15 14 38 38 H 1.08999 * 109.47145 * 300.00897 * 18 15 14 39 39 H 1.09000 * 109.46883 * 59.99966 * 18 15 14 40 40 H 0.96997 * 119.99983 * 0.02562 * 19 18 15 41 41 H 1.09002 * 109.47074 * 299.99803 * 22 20 19 42 42 H 1.09000 * 109.47343 * 59.99937 * 22 20 19 43 43 H 1.07999 * 117.96014 * 317.34627 * 25 23 22 44 44 H 1.07998 * 117.95749 * 179.49085 * 26 25 23 45 45 H 1.09000 * 109.35737 * 137.33371 * 27 26 25 46 46 H 1.09004 * 109.35811 * 257.05777 * 27 26 25 47 47 H 1.08998 * 109.64192 * 70.25019 * 28 27 26 48 48 H 1.09003 * 109.64312 * 190.66991 * 28 27 26 49 49 H 1.08994 * 109.64629 * 310.04010 * 29 23 22 50 50 H 1.09004 * 109.64172 * 70.66894 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2436 -4.8629 -0.0032 13 7 2.1982 -5.9794 -0.0050 14 6 1.4978 -7.2708 -0.0062 15 6 2.5228 -8.4068 -0.0086 16 1 3.2031 -8.2805 -0.8507 17 8 3.2655 -8.3808 1.2119 18 6 1.7973 -9.7479 -0.1356 19 7 2.7786 -10.8357 -0.1373 20 6 2.3666 -12.1148 -0.2409 21 8 1.1835 -12.3652 -0.3331 22 6 3.3761 -13.2337 -0.2433 23 6 2.6508 -14.5747 -0.3714 24 1 1.9071 -14.6604 0.4210 25 6 1.9665 -14.6448 -1.7051 26 6 1.9626 -15.6935 -2.4640 27 6 2.6505 -16.9823 -2.1208 28 6 2.9709 -17.0266 -0.6252 29 6 3.6640 -15.7139 -0.2414 30 1 -0.4850 0.8402 -0.0004 31 1 0.3533 -2.3905 -0.0016 32 1 0.6166 -4.9200 -0.8930 33 1 0.6173 -4.9212 0.8869 34 1 2.8337 -5.9132 0.7759 35 1 0.8733 -7.3463 0.8840 36 1 0.8726 -7.3441 -0.8960 37 1 2.7228 -8.4879 2.0050 38 1 1.1169 -9.8741 0.7065 39 1 1.2307 -9.7677 -1.0665 40 1 3.7249 -10.6354 -0.0639 41 1 4.0566 -13.1073 -1.0853 42 1 3.9425 -13.2141 0.6878 43 1 1.4448 -13.7657 -2.0534 44 1 1.4309 -15.6374 -3.4024 45 1 1.9993 -17.8184 -2.3757 46 1 3.5773 -17.0597 -2.6893 47 1 2.0479 -17.1354 -0.0558 48 1 3.6313 -17.8684 -0.4167 49 1 4.5061 -15.5333 -0.9095 50 1 4.0160 -15.7755 0.7884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753914685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -128.955873 kcal Electronic energy + Delta-G solvation = -28041.778958 eV Core-core repulsion = 23875.110320 eV Total energy + Delta-G solvation = -4166.668637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40903 -38.90891 -38.37450 -37.82048 -34.97624 -34.48989 -33.79531 -33.09931 -31.34642 -31.25094 -30.48685 -28.14257 -26.75882 -24.84965 -23.39017 -22.70188 -22.32969 -21.94864 -20.48392 -19.26931 -18.31183 -17.91239 -17.56777 -17.09053 -16.62327 -16.37017 -15.92053 -15.60458 -15.55611 -15.10104 -14.64377 -14.57441 -14.48007 -14.13528 -13.90496 -13.78492 -13.43968 -13.30568 -13.05909 -12.99861 -12.85074 -12.64965 -12.46837 -12.40925 -11.87565 -11.84149 -11.58809 -11.52547 -11.27696 -11.17546 -11.05211 -10.93718 -10.53822 -10.40765 -10.34547 -10.22863 -9.94618 -9.52753 -9.38549 -9.26960 -8.48536 -8.11064 -7.96897 -6.42515 -3.83347 2.04629 2.36818 2.81868 3.16019 3.26689 3.34084 3.89255 3.96165 4.14995 4.23377 4.24920 4.30713 4.38678 4.55658 4.73539 4.75303 4.78213 4.87879 4.90945 5.02006 5.04089 5.11075 5.17873 5.22582 5.25597 5.29297 5.29732 5.35620 5.42814 5.52615 5.55139 5.55862 5.68497 5.73262 5.88260 5.93128 5.94192 5.96679 6.09157 6.24253 6.43393 6.69026 7.12407 7.19378 7.36126 7.54858 7.64343 7.94328 8.05802 8.60403 9.17306 9.53402 10.04787 10.75290 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044607 B = 0.001318 C = 0.001304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.551738 B =21234.939251 C =21467.058076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.031 3.969 15 C 0.098 3.902 16 H 0.117 0.883 17 O -0.554 6.554 18 C 0.088 3.912 19 N -0.725 5.725 20 C 0.511 3.489 21 O -0.540 6.540 22 C -0.134 4.134 23 C -0.043 4.043 24 H 0.087 0.913 25 C -0.136 4.136 26 C -0.169 4.169 27 C -0.091 4.091 28 C -0.120 4.120 29 C -0.116 4.116 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.356 0.644 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.373 0.627 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.406 0.594 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -32.195 0.046 32.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.134 0.866 17 O -0.359 6.359 18 C -0.036 4.036 19 N -0.377 5.377 20 C 0.297 3.703 21 O -0.417 6.417 22 C -0.174 4.174 23 C -0.061 4.061 24 H 0.105 0.895 25 C -0.154 4.154 26 C -0.187 4.187 27 C -0.128 4.128 28 C -0.158 4.158 29 C -0.154 4.154 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.177 0.823 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.220 0.780 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.241 0.759 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.662 -32.093 -1.114 32.320 hybrid contribution -0.861 1.036 1.156 1.775 sum 2.801 -31.057 0.043 31.183 Atomic orbital electron populations 1.69624 1.05953 1.28055 1.50703 1.25260 0.95630 0.99728 0.97312 0.85798 0.79736 0.81106 0.77698 1.19187 1.20736 1.20776 1.19765 0.93425 0.82219 1.47468 0.87842 1.41869 1.09194 1.04605 1.64389 1.19788 0.88395 0.84702 0.84547 1.90531 1.13727 1.87031 1.55285 1.21687 0.94337 0.91037 1.01188 1.59996 1.18514 0.99274 1.51974 1.22541 0.95582 0.90358 1.01494 1.22245 0.94236 0.91029 0.88673 0.86562 1.86646 1.38024 1.95767 1.15491 1.22029 0.91899 0.86485 1.03230 1.45931 1.11031 1.05675 1.75103 1.20736 0.90077 0.83690 0.75747 1.90711 1.18016 1.83849 1.49095 1.21717 0.98058 0.93036 1.04579 1.19832 0.96766 0.92504 0.97011 0.89470 1.22167 0.99183 0.98759 0.95323 1.22037 1.01455 0.95183 0.99984 1.20446 1.00032 0.95989 0.96286 1.21583 1.00766 0.97299 0.96138 1.21662 0.97844 0.94270 1.01614 0.91926 0.77471 0.89603 0.93892 0.82339 0.94972 0.89935 0.77953 0.91202 0.90362 0.75882 0.88662 0.88527 0.87202 0.88178 0.91356 0.91125 0.91709 0.91648 0.91484 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 11 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.66 -10.39 6.12 -115.06 -0.70 -11.09 16 14 C 0.03 0.34 5.36 -3.82 -0.02 0.32 16 15 C 0.10 0.89 3.29 -26.73 -0.09 0.81 16 16 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 17 O -0.55 -5.24 12.60 -35.23 -0.44 -5.68 16 18 C 0.09 0.73 5.34 -4.04 -0.02 0.71 16 19 N -0.72 -5.55 5.45 -60.29 -0.33 -5.88 16 20 C 0.51 4.58 7.46 -10.98 -0.08 4.50 16 21 O -0.54 -6.84 14.27 5.56 0.08 -6.76 16 22 C -0.13 -0.81 5.14 -27.89 -0.14 -0.95 16 23 C -0.04 -0.31 2.12 -92.07 -0.19 -0.50 16 24 H 0.09 0.75 7.95 -51.92 -0.41 0.33 16 25 C -0.14 -1.18 8.41 -35.90 -0.30 -1.48 16 26 C -0.17 -1.30 9.80 -35.90 -0.35 -1.65 16 27 C -0.09 -0.54 6.11 -28.18 -0.17 -0.71 16 28 C -0.12 -0.67 6.02 -26.55 -0.16 -0.83 16 29 C -0.12 -0.63 5.29 -26.55 -0.14 -0.77 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.36 5.95 7.99 -39.29 -0.31 5.64 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.37 2.46 9.04 45.56 0.41 2.87 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.41 2.50 8.35 -40.82 -0.34 2.16 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 1.16 6.51 -52.49 -0.34 0.82 16 44 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 50 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -34.03 410.27 -9.11 -43.14 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -7.59 Total: 15.47 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.03 Total: 2.58 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.37 Total: -55.14 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.28 Total: -28.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.03 -9.11 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753914685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.816 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds