Wall clock time and date at job start Sat Apr 11 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99629 * 2 1 4 4 H 1.48500 * 109.46980 * 269.99951 * 3 2 1 5 5 H 1.48493 * 109.47255 * 29.99888 * 3 2 1 6 6 H 1.48497 * 109.47058 * 150.00151 * 3 2 1 7 7 C 1.38811 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00407 * 157.56454 * 7 2 1 9 9 N 1.36939 * 119.99608 * 337.56582 * 7 2 1 10 10 C 1.46500 * 120.00106 * 326.28818 * 9 7 2 11 11 C 1.53002 * 109.47171 * 265.57580 * 10 9 7 12 12 N 1.46500 * 109.47171 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99930 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00226 * 179.97438 * 13 12 11 16 16 H 1.08992 * 110.50516 * 317.26494 * 15 13 12 17 17 C 1.54093 * 110.56033 * 80.00348 * 15 13 12 18 18 O 1.45701 * 104.13231 * 118.50683 * 17 15 13 19 19 C 1.34069 * 109.30650 * 0.11403 * 18 17 15 20 20 O 1.21507 * 123.02638 * 179.97438 * 19 18 17 21 21 N 1.33997 * 113.90325 * 359.87636 * 19 18 17 22 22 C 1.46507 * 119.99791 * 146.29025 * 9 7 2 23 23 C 1.54237 * 108.89594 * 61.39666 * 22 9 7 24 24 C 1.50555 * 108.48305 * 159.17958 * 23 22 9 25 25 C 1.54069 * 112.41599 * 94.26644 * 24 23 22 26 26 C 1.54063 * 112.81318 * 318.27757 * 25 24 23 27 27 C 1.50481 * 112.49715 * 318.28702 * 26 25 24 28 28 C 1.45537 * 108.89188 * 298.60195 * 22 9 7 29 29 H 0.96998 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47189 * 145.57973 * 10 9 7 31 31 H 1.08999 * 109.47115 * 25.57362 * 10 9 7 32 32 H 1.09001 * 109.46950 * 59.99693 * 11 10 9 33 33 H 1.09005 * 109.47106 * 300.00282 * 11 10 9 34 34 H 0.96999 * 119.99655 * 0.02562 * 12 11 10 35 35 H 1.08998 * 110.51954 * 237.20751 * 17 15 13 36 36 H 1.09000 * 110.52321 * 359.80664 * 17 15 13 37 37 H 0.97001 * 125.56284 * 180.11844 * 21 19 18 38 38 H 1.08997 * 108.86690 * 179.97438 * 22 9 7 39 39 H 1.09010 * 109.62809 * 278.97315 * 23 22 9 40 40 H 1.08998 * 109.62999 * 39.55129 * 23 22 9 41 41 H 1.09001 * 108.92117 * 333.50632 * 24 23 22 42 42 H 1.09003 * 108.83181 * 214.95661 * 24 23 22 43 43 H 1.08998 * 108.80841 * 197.42016 * 25 24 23 44 44 H 1.09000 * 108.73044 * 79.07746 * 25 24 23 45 45 H 1.09004 * 108.87926 * 197.50893 * 26 25 24 46 46 H 1.08998 * 108.88203 * 79.06098 * 26 25 24 47 47 H 1.08997 * 109.62785 * 334.44592 * 27 26 25 48 48 H 1.09005 * 109.78532 * 213.96124 * 27 26 25 49 49 H 1.09000 * 108.89596 * 303.44019 * 28 22 9 50 50 H 1.09001 * 108.89762 * 62.03782 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0290 -1.2376 -0.3564 9 7 1.4034 -2.3429 0.4536 10 6 0.4320 -2.2708 1.5479 11 6 1.1400 -2.5414 2.8770 12 7 0.1688 -2.4687 3.9714 13 6 0.5684 -2.6751 5.2418 14 8 1.7322 -2.9207 5.4792 15 6 -0.4306 -2.5998 6.3677 16 1 -1.0981 -1.7493 6.2295 17 6 -1.2360 -3.9098 6.4651 18 8 -0.9207 -4.4235 7.7916 19 6 -0.0758 -3.5815 8.4037 20 8 0.3499 -3.7700 9.5260 21 7 0.2580 -2.5147 7.6647 22 6 1.7255 -3.6356 -0.1559 23 6 3.2262 -3.9253 0.0510 24 6 3.4509 -5.4069 -0.0948 25 6 3.8670 -5.8000 -1.5252 26 6 3.0665 -5.0506 -2.6074 27 6 1.6033 -4.9454 -2.2720 28 6 1.3587 -3.5972 -1.5638 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3465 -3.0176 1.3925 31 1 -0.0165 -1.2776 1.5708 32 1 1.9187 -1.7946 3.0325 33 1 1.5886 -3.5346 2.8542 34 1 -0.7620 -2.2727 3.7815 35 1 -2.3038 -3.7093 6.3768 36 1 -0.9155 -4.6135 5.6968 37 1 0.8566 -1.8028 7.9399 38 1 1.1446 -4.4135 0.3395 39 1 3.8094 -3.3895 -0.6981 40 1 3.5264 -3.6069 1.0493 41 1 2.5301 -5.9309 0.1613 42 1 4.2350 -5.7137 0.5974 43 1 3.7141 -6.8716 -1.6537 44 1 4.9263 -5.5785 -1.6550 45 1 3.1740 -5.5789 -3.5548 46 1 3.4761 -4.0465 -2.7173 47 1 1.3197 -5.7635 -1.6100 48 1 1.0110 -4.9917 -3.1859 49 1 0.3024 -3.3416 -1.6465 50 1 1.9480 -2.8268 -2.0612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754545510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:42 Heat of formation + Delta-G solvation = -118.800892 kcal Electronic energy + Delta-G solvation = -30689.182146 eV Core-core repulsion = 26522.953862 eV Total energy + Delta-G solvation = -4166.228284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.85785 -40.56532 -40.03802 -38.37733 -37.27695 -35.80314 -35.58395 -33.61351 -32.87488 -31.97722 -30.80947 -29.04941 -26.46281 -25.66603 -25.36387 -24.33342 -23.54934 -22.48662 -21.75502 -21.23946 -20.01655 -19.34244 -19.04542 -18.24525 -18.10086 -17.30228 -17.09573 -16.74825 -16.37515 -16.28167 -15.86687 -15.58350 -15.46720 -15.29925 -15.14538 -14.98464 -14.65514 -14.50709 -14.40650 -13.91654 -13.73334 -13.49985 -13.34266 -12.96216 -12.89287 -12.79199 -12.65987 -12.36715 -12.12108 -12.06559 -11.98849 -11.89613 -11.54068 -11.52601 -11.48014 -11.26194 -11.15974 -11.08902 -10.87496 -10.46487 -10.38828 -10.09294 -8.54242 -7.81058 -5.33827 1.30154 1.39917 1.43529 1.49286 1.56222 1.60365 2.02962 2.52278 2.58787 3.07588 3.27287 3.40360 3.66480 3.78637 3.90567 4.06511 4.08449 4.20813 4.38217 4.40511 4.43558 4.47047 4.47496 4.52750 4.54140 4.64863 4.74016 4.85184 4.91215 5.01820 5.07693 5.15773 5.26602 5.30844 5.39902 5.40099 5.45791 5.46964 5.53889 5.61092 5.66472 5.72920 5.75109 5.77766 5.92671 6.04407 6.47910 6.54260 6.86719 7.14741 7.22964 7.92391 8.41108 9.16579 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.003167 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.559263 B = 8838.053259 C =10667.155175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.027 4.027 3 Si 0.936 3.064 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.049 0.951 9 N -0.593 5.593 10 C 0.142 3.858 11 C 0.119 3.881 12 N -0.697 5.697 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.084 3.916 16 H 0.179 0.821 17 C 0.052 3.948 18 O -0.337 6.337 19 C 0.649 3.351 20 O -0.571 6.571 21 N -0.702 5.702 22 C 0.178 3.822 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.107 4.107 28 C -0.106 4.106 29 H 0.251 0.749 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.419 0.581 35 H 0.173 0.827 36 H 0.115 0.885 37 H 0.443 0.557 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -8.235 2.692 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.224 4.224 3 Si 0.766 3.234 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.066 0.934 9 N -0.313 5.313 10 C 0.014 3.986 11 C -0.008 4.008 12 N -0.350 5.350 13 C 0.280 3.720 14 O -0.458 6.458 15 C -0.025 4.025 16 H 0.196 0.804 17 C -0.022 4.022 18 O -0.246 6.246 19 C 0.402 3.598 20 O -0.459 6.459 21 N -0.373 5.373 22 C 0.072 3.928 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.257 0.743 35 H 0.190 0.810 36 H 0.133 0.867 37 H 0.288 0.712 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.895 -8.723 3.411 10.568 hybrid contribution 0.775 1.941 -0.201 2.100 sum -4.120 -6.781 3.210 8.560 Atomic orbital electron populations 1.70033 1.05905 1.25695 1.53574 1.25420 0.95548 1.00178 1.01271 0.85777 0.78518 0.81744 0.77351 1.21629 1.21530 1.20976 1.18999 0.94246 0.86865 1.37630 0.93380 1.44095 1.49362 1.02619 1.35205 1.21005 0.90778 1.02806 0.83970 1.21944 0.92062 0.99272 0.87488 1.45861 1.13773 1.70029 1.05330 1.21206 0.89369 0.76794 0.84638 1.90761 1.20979 1.49714 1.84394 1.22631 0.93466 1.04356 0.82059 0.80407 1.24766 1.04094 0.92130 0.81241 1.87346 1.60031 1.45992 1.31280 1.18599 0.77835 0.79093 0.84265 1.91032 1.58921 1.77304 1.18615 1.45674 1.51115 1.25616 1.14915 1.19476 0.93712 0.86838 0.92734 1.21619 0.97730 0.96172 0.99694 1.21290 1.01350 0.95142 0.97157 1.21867 0.99247 1.00168 0.93404 1.21304 0.95170 1.00138 0.98691 1.21265 0.96557 0.96590 1.00069 1.20725 0.99618 0.96877 0.97307 0.93917 0.93953 0.89762 0.95153 0.93700 0.74304 0.80956 0.86675 0.71229 0.92812 0.93729 0.94334 0.91896 0.92450 0.90840 0.92493 0.91163 0.93949 0.91088 0.91770 0.94934 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.74 11.32 21.65 0.25 -46.49 16 2 C -0.03 -1.35 4.93 84.86 0.42 -0.93 16 3 Si 0.94 42.11 29.61 68.60 2.03 44.14 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.25 -12.25 8.18 84.03 0.69 -11.56 16 8 H 0.05 2.49 7.43 -2.91 -0.02 2.47 16 9 N -0.59 -25.59 2.31 -688.47 -1.59 -27.18 16 10 C 0.14 5.44 5.30 86.38 0.46 5.89 16 11 C 0.12 4.10 6.00 86.38 0.52 4.62 16 12 N -0.70 -16.62 5.56 -463.05 -2.57 -19.19 16 13 C 0.50 12.07 6.96 87.66 0.61 12.68 16 14 O -0.58 -20.71 16.56 -3.06 -0.05 -20.76 16 15 C 0.08 1.20 4.18 44.50 0.19 1.39 16 16 H 0.18 0.88 8.14 -2.39 -0.02 0.86 16 17 C 0.05 0.57 7.86 72.35 0.57 1.14 16 18 O -0.34 -7.41 11.11 -50.10 -0.56 -7.97 16 19 C 0.65 17.41 9.16 129.91 1.19 18.61 16 20 O -0.57 -20.36 18.04 19.65 0.35 -20.00 16 21 N -0.70 -14.34 5.63 -573.03 -3.22 -17.57 16 22 C 0.18 6.48 2.13 43.13 0.09 6.57 16 23 C -0.11 -3.85 4.49 30.22 0.14 -3.71 16 24 C -0.11 -2.93 5.32 30.16 0.16 -2.77 16 25 C -0.11 -2.48 5.85 31.32 0.18 -2.30 16 26 C -0.12 -2.85 5.31 30.14 0.16 -2.69 16 27 C -0.11 -2.84 5.61 30.20 0.17 -2.67 16 28 C -0.11 -3.82 4.46 28.74 0.13 -3.69 16 29 H 0.25 12.65 8.31 -92.71 -0.77 11.88 16 30 H 0.04 1.48 8.00 -2.39 -0.02 1.46 16 31 H 0.08 3.71 5.32 -2.39 -0.01 3.70 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 35 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 1.24 7.72 -2.39 -0.02 1.22 16 37 H 0.44 8.49 8.96 -92.71 -0.83 7.66 16 38 H 0.05 1.83 7.14 -2.39 -0.02 1.82 16 39 H 0.04 1.64 6.75 -2.38 -0.02 1.62 16 40 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 41 H 0.06 1.57 6.63 -2.39 -0.02 1.55 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.04 1.22 6.62 -2.39 -0.02 1.21 16 47 H 0.07 1.72 6.98 -2.39 -0.02 1.70 16 48 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.04 1.53 6.87 -2.39 -0.02 1.52 16 Total: -1.00 -73.39 391.94 -0.35 -73.74 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.65 Total: 20.71 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.66 Total: 20.57 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -7.14 Total: -110.44 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.25 Total: -48.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -73.39 -0.35 -73.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754545510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.062 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds