Wall clock time and date at job start Sat Apr 11 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48491 * 109.47122 * 274.98728 * 3 2 1 5 5 H 1.48496 * 109.46701 * 34.99437 * 3 2 1 6 6 H 1.48508 * 109.46887 * 154.98819 * 3 2 1 7 7 C 1.38813 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99591 * 210.20154 * 7 2 1 9 9 N 1.36931 * 120.00274 * 30.20224 * 7 2 1 10 10 C 1.46928 * 120.63072 * 25.76679 * 9 7 2 11 11 C 1.53199 * 108.77291 * 126.37374 * 10 9 7 12 12 C 1.53038 * 109.31190 * 54.63508 * 11 10 9 13 13 C 1.53039 * 109.54141 * 298.63277 * 12 11 10 14 14 C 1.52998 * 109.49915 * 181.31784 * 13 12 11 15 15 O 1.42903 * 109.46890 * 174.52540 * 14 13 12 16 16 N 1.46499 * 109.49990 * 301.38371 * 13 12 11 17 17 C 1.34776 * 120.00140 * 297.97508 * 16 13 12 18 18 O 1.21283 * 119.99956 * 4.34529 * 17 16 13 19 19 C 1.50700 * 119.99899 * 184.34984 * 17 16 13 20 20 H 1.09000 * 108.56435 * 62.06410 * 19 17 16 21 21 C 1.51783 * 108.61178 * 179.97438 * 19 17 16 22 22 C 1.52991 * 110.88024 * 188.11978 * 21 19 17 23 23 N 1.47190 * 108.66779 * 273.53520 * 22 21 19 24 24 C 1.33371 * 120.42643 * 71.95760 * 23 22 21 25 25 O 1.21284 * 119.88942 * 179.71816 * 24 23 22 26 26 C 1.51426 * 120.22023 * 359.69427 * 24 23 22 27 27 C 1.51791 * 108.61466 * 304.25713 * 19 17 16 28 28 C 1.46930 * 120.63049 * 205.49448 * 9 7 2 29 29 H 0.97000 * 119.99635 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58706 * 246.15839 * 10 9 7 31 31 H 1.08997 * 109.58489 * 6.58981 * 10 9 7 32 32 H 1.08996 * 109.49585 * 174.58947 * 11 10 9 33 33 H 1.09001 * 109.49198 * 294.68356 * 11 10 9 34 34 H 1.08999 * 109.46171 * 58.65576 * 12 11 10 35 35 H 1.09003 * 109.45532 * 178.61413 * 12 11 10 36 36 H 1.08996 * 109.46929 * 294.52395 * 14 13 12 37 37 H 1.09003 * 109.47140 * 54.52656 * 14 13 12 38 38 H 0.96702 * 113.99804 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99802 * 117.96642 * 16 13 12 40 40 H 1.08992 * 109.19974 * 308.48571 * 21 19 17 41 41 H 1.08999 * 109.19654 * 67.76617 * 21 19 17 42 42 H 1.09003 * 109.60060 * 33.28948 * 22 21 19 43 43 H 1.09000 * 109.60117 * 153.77682 * 22 21 19 44 44 H 0.97002 * 119.78705 * 251.98579 * 23 22 21 45 45 H 1.09003 * 109.63164 * 48.49067 * 26 24 23 46 46 H 1.08994 * 109.63499 * 168.88975 * 26 24 23 47 47 H 1.08999 * 109.22308 * 292.39877 * 27 19 17 48 48 H 1.08991 * 109.22205 * 51.75266 * 27 19 17 49 49 H 1.08994 * 109.58647 * 353.41168 * 28 9 7 50 50 H 1.08998 * 109.59047 * 113.84190 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 2.9802 -1.2659 0.4700 9 7 1.4649 -2.3073 -0.5976 10 6 0.4872 -2.1650 -1.6850 11 6 0.9680 -2.9796 -2.8901 12 6 1.2192 -4.4254 -2.4559 13 6 2.3123 -4.4558 -1.3853 14 6 2.5857 -5.9044 -0.9756 15 8 3.6918 -5.9430 -0.0716 16 7 3.5384 -3.8595 -1.9212 17 6 4.1533 -4.4207 -2.9811 18 8 3.6503 -5.3722 -3.5402 19 6 5.4660 -3.8661 -3.4713 20 1 6.2046 -3.9683 -2.6763 21 6 5.9227 -4.6855 -4.6646 22 6 7.3430 -4.2981 -5.0806 23 7 7.2679 -3.1554 -6.0054 24 6 6.9383 -1.9436 -5.5564 25 8 6.8843 -1.0079 -6.3262 26 6 6.6307 -1.7322 -4.0889 27 6 5.2853 -2.3897 -3.7742 28 6 1.8509 -3.6580 -0.1669 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4826 -2.5377 -1.3555 31 1 0.4018 -1.1149 -1.9644 32 1 0.2060 -2.9608 -3.6692 33 1 1.8928 -2.5492 -3.2744 34 1 0.3003 -4.8472 -2.0488 35 1 1.5379 -5.0129 -3.3170 36 1 1.7028 -6.3166 -0.4872 37 1 2.8199 -6.4945 -1.8616 38 1 3.9222 -6.8323 0.2303 39 1 3.9077 -3.0606 -1.5132 40 1 5.9020 -5.7431 -4.4021 41 1 5.2445 -4.5110 -5.4999 42 1 7.9187 -4.0175 -4.1986 43 1 7.8209 -5.1414 -5.5792 44 1 7.4590 -3.2847 -6.9476 45 1 7.4120 -2.1890 -3.4814 46 1 6.5782 -0.6646 -3.8758 47 1 4.6224 -2.2779 -4.6322 48 1 4.8387 -1.8981 -2.9101 49 1 2.6649 -3.5927 0.5549 50 1 0.9946 -4.1550 0.2889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754855307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:56 Heat of formation + Delta-G solvation = -107.475768 kcal Electronic energy + Delta-G solvation = -32440.811452 eV Core-core repulsion = 28275.074262 eV Total energy + Delta-G solvation = -4165.737190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.74804 -39.80632 -37.88877 -36.33025 -36.08884 -34.18499 -33.83933 -32.18386 -31.20673 -30.56556 -29.96643 -27.08846 -25.49814 -25.11247 -24.23628 -22.46277 -22.05873 -20.84013 -19.97812 -19.70713 -18.72199 -17.57580 -17.27317 -17.01635 -16.74299 -16.47163 -15.38667 -15.21667 -14.89660 -14.82855 -14.25748 -14.16026 -14.10520 -13.88630 -13.66663 -13.49254 -13.19790 -12.96117 -12.76331 -12.62888 -12.41197 -12.33136 -11.98882 -11.83972 -11.63641 -11.56234 -11.24217 -11.13224 -11.00271 -10.85018 -10.74779 -10.41321 -10.23330 -10.13463 -9.89128 -9.81387 -9.74047 -9.57120 -9.31805 -9.05365 -8.49558 -8.44763 -6.82997 -5.90155 -3.22192 2.55034 2.95242 3.14440 3.35535 3.44118 3.45645 3.50720 4.33001 4.42810 4.46483 4.48594 4.61629 4.65687 4.96366 5.04758 5.13820 5.20050 5.24438 5.27800 5.34882 5.37237 5.52803 5.57024 5.61096 5.63581 5.74197 5.79604 5.86437 5.91986 5.98376 6.08453 6.11757 6.23088 6.35289 6.43413 6.59526 6.63321 6.64153 6.75778 6.82630 7.06677 7.08504 7.25310 7.47595 7.76033 7.80266 8.03351 8.11590 8.32012 8.62118 9.09928 9.76881 10.33974 11.17994 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.004777 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.719928 B = 5860.216212 C = 7784.006607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.014 3.986 3 Si 0.886 3.114 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.586 5.586 10 C 0.170 3.830 11 C -0.134 4.134 12 C -0.120 4.120 13 C 0.167 3.833 14 C 0.067 3.933 15 O -0.565 6.565 16 N -0.686 5.686 17 C 0.518 3.482 18 O -0.555 6.555 19 C -0.107 4.107 20 H 0.096 0.904 21 C -0.121 4.121 22 C 0.109 3.891 23 N -0.726 5.726 24 C 0.518 3.482 25 O -0.554 6.554 26 C -0.137 4.137 27 C -0.109 4.109 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.370 0.630 39 H 0.406 0.594 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.399 0.601 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.425 -12.722 -6.203 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.187 4.187 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.309 5.309 10 C 0.044 3.956 11 C -0.173 4.173 12 C -0.158 4.158 13 C 0.079 3.921 14 C -0.012 4.012 15 O -0.369 6.369 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.434 6.434 19 C -0.129 4.129 20 H 0.114 0.886 21 C -0.160 4.160 22 C -0.016 4.016 23 N -0.378 5.378 24 C 0.305 3.695 25 O -0.432 6.432 26 C -0.177 4.177 27 C -0.147 4.147 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.215 0.785 39 H 0.243 0.757 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.234 0.766 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.109 0.891 49 H 0.085 0.915 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.828 -12.061 -6.801 18.210 hybrid contribution 0.460 0.494 0.011 0.675 sum 12.288 -11.567 -6.790 18.190 Atomic orbital electron populations 1.70229 1.05578 1.25850 1.50818 1.24863 0.94771 0.98598 1.00489 0.86534 0.79808 0.84347 0.77755 1.21349 1.21973 1.20217 1.19061 0.98915 0.87334 1.34290 0.91449 1.44095 1.49751 0.99833 1.37197 1.20735 0.90470 0.99055 0.85333 1.22053 1.00593 0.95198 0.99505 1.21755 0.96968 0.98511 0.98578 1.20877 0.84415 0.90926 0.95891 1.22628 0.88443 0.97635 0.92503 1.86508 1.51828 1.32882 1.65652 1.45836 1.26055 1.30379 1.31320 1.20376 0.85986 0.83270 0.79942 1.90581 1.66477 1.28923 1.57447 1.21018 0.96527 0.95814 0.99493 0.88599 1.21625 0.95867 1.00626 0.97875 1.21819 0.97221 0.88427 0.94091 1.45993 1.70637 1.08961 1.12224 1.20659 0.75195 0.82145 0.91471 1.90757 1.52491 1.41285 1.58638 1.21982 0.98937 1.04236 0.92514 1.21256 0.96348 0.93092 1.04030 1.20999 0.97975 0.86901 0.92079 0.93618 0.96328 0.90677 0.93272 0.92635 0.92197 0.90973 0.93606 0.92008 0.78501 0.75746 0.89501 0.90541 0.90403 0.89273 0.76578 0.89068 0.87884 0.90853 0.89127 0.91481 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.85 11.96 55.49 0.66 -24.18 16 2 C 0.01 0.36 4.54 -17.43 -0.08 0.28 16 3 Si 0.89 20.75 29.65 -169.99 -5.04 15.71 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.27 -6.80 9.50 -15.06 -0.14 -6.94 16 8 H 0.07 1.68 7.97 -52.49 -0.42 1.26 16 9 N -0.59 -13.49 2.88 -172.58 -0.50 -13.99 16 10 C 0.17 3.85 5.45 -3.71 -0.02 3.83 16 11 C -0.13 -2.54 5.93 -26.61 -0.16 -2.70 16 12 C -0.12 -2.06 4.51 -26.69 -0.12 -2.18 16 13 C 0.17 2.78 0.45 -131.92 -0.06 2.72 16 14 C 0.07 0.97 5.60 37.16 0.21 1.18 16 15 O -0.56 -7.66 13.07 -35.23 -0.46 -8.12 16 16 N -0.69 -10.65 3.79 -47.70 -0.18 -10.83 16 17 C 0.52 7.43 6.55 -10.99 -0.07 7.36 16 18 O -0.55 -9.16 12.06 5.55 0.07 -9.09 16 19 C -0.11 -1.14 2.06 -93.00 -0.19 -1.33 16 20 H 0.10 0.85 7.87 -51.93 -0.41 0.45 16 21 C -0.12 -1.12 4.39 -27.35 -0.12 -1.24 16 22 C 0.11 0.71 6.47 -3.67 -0.02 0.69 16 23 N -0.73 -6.48 5.27 -59.90 -0.32 -6.79 16 24 C 0.52 6.36 7.07 -11.25 -0.08 6.28 16 25 O -0.55 -9.32 17.92 5.55 0.10 -9.22 16 26 C -0.14 -1.41 5.57 -27.52 -0.15 -1.56 16 27 C -0.11 -1.25 4.87 -27.34 -0.13 -1.38 16 28 C 0.15 2.91 5.03 -3.93 -0.02 2.89 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.91 6.32 -51.93 -0.33 1.58 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.08 7.53 -51.93 -0.39 0.69 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.27 6.21 -51.93 -0.32 0.95 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 38 H 0.37 3.29 9.12 45.56 0.42 3.70 16 39 H 0.41 6.51 7.29 -40.82 -0.30 6.21 16 40 H 0.09 0.82 7.74 -51.93 -0.40 0.41 16 41 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 42 H 0.08 0.43 6.71 -51.93 -0.35 0.08 16 43 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.40 3.17 8.91 -40.82 -0.36 2.80 16 45 H 0.09 0.70 6.77 -51.93 -0.35 0.35 16 46 H 0.10 1.13 8.13 -51.93 -0.42 0.70 16 47 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 48 H 0.09 1.12 6.89 -51.93 -0.36 0.76 16 49 H 0.07 1.35 7.77 -51.93 -0.40 0.95 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -32.97 380.56 -8.32 -41.29 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.23 Total: 11.60 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.16 Total: 7.89 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.33 Total: -55.79 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.29 Total: -26.43 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.04 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.97 -8.32 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754855307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.187 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds