Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48491 * 109.47122 * 274.98728 * 3 2 1 5 5 H 1.48496 * 109.46701 * 34.99437 * 3 2 1 6 6 H 1.48508 * 109.46887 * 154.98819 * 3 2 1 7 7 C 1.38813 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99591 * 210.20154 * 7 2 1 9 9 N 1.36931 * 120.00274 * 30.20224 * 7 2 1 10 10 C 1.46928 * 120.63072 * 25.76679 * 9 7 2 11 11 C 1.53199 * 108.77291 * 126.37374 * 10 9 7 12 12 C 1.53038 * 109.31190 * 54.63508 * 11 10 9 13 13 C 1.53039 * 109.54141 * 298.63277 * 12 11 10 14 14 C 1.52998 * 109.49915 * 181.31784 * 13 12 11 15 15 O 1.42903 * 109.46890 * 174.52540 * 14 13 12 16 16 N 1.46499 * 109.49990 * 301.38371 * 13 12 11 17 17 C 1.34776 * 120.00140 * 297.97508 * 16 13 12 18 18 O 1.21283 * 119.99956 * 4.34529 * 17 16 13 19 19 C 1.50700 * 119.99899 * 184.34984 * 17 16 13 20 20 H 1.09000 * 108.56435 * 62.06410 * 19 17 16 21 21 C 1.51783 * 108.61178 * 179.97438 * 19 17 16 22 22 C 1.52991 * 110.88024 * 188.11978 * 21 19 17 23 23 N 1.47190 * 108.66779 * 273.53520 * 22 21 19 24 24 C 1.33371 * 120.42643 * 71.95760 * 23 22 21 25 25 O 1.21284 * 119.88942 * 179.71816 * 24 23 22 26 26 C 1.51426 * 120.22023 * 359.69427 * 24 23 22 27 27 C 1.51791 * 108.61466 * 304.25713 * 19 17 16 28 28 C 1.46930 * 120.63049 * 205.49448 * 9 7 2 29 29 H 0.97000 * 119.99635 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58706 * 246.15839 * 10 9 7 31 31 H 1.08997 * 109.58489 * 6.58981 * 10 9 7 32 32 H 1.08996 * 109.49585 * 174.58947 * 11 10 9 33 33 H 1.09001 * 109.49198 * 294.68356 * 11 10 9 34 34 H 1.08999 * 109.46171 * 58.65576 * 12 11 10 35 35 H 1.09003 * 109.45532 * 178.61413 * 12 11 10 36 36 H 1.08996 * 109.46929 * 294.52395 * 14 13 12 37 37 H 1.09003 * 109.47140 * 54.52656 * 14 13 12 38 38 H 0.96702 * 113.99804 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99802 * 117.96642 * 16 13 12 40 40 H 1.08992 * 109.19974 * 308.48571 * 21 19 17 41 41 H 1.08999 * 109.19654 * 67.76617 * 21 19 17 42 42 H 1.09003 * 109.60060 * 33.28948 * 22 21 19 43 43 H 1.09000 * 109.60117 * 153.77682 * 22 21 19 44 44 H 0.97002 * 119.78705 * 251.98579 * 23 22 21 45 45 H 1.09003 * 109.63164 * 48.49067 * 26 24 23 46 46 H 1.08994 * 109.63499 * 168.88975 * 26 24 23 47 47 H 1.08999 * 109.22308 * 292.39877 * 27 19 17 48 48 H 1.08991 * 109.22205 * 51.75266 * 27 19 17 49 49 H 1.08994 * 109.58647 * 353.41168 * 28 9 7 50 50 H 1.08998 * 109.59047 * 113.84190 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 2.9802 -1.2659 0.4700 9 7 1.4649 -2.3073 -0.5976 10 6 0.4872 -2.1650 -1.6850 11 6 0.9680 -2.9796 -2.8901 12 6 1.2192 -4.4254 -2.4559 13 6 2.3123 -4.4558 -1.3853 14 6 2.5857 -5.9044 -0.9756 15 8 3.6918 -5.9430 -0.0716 16 7 3.5384 -3.8595 -1.9212 17 6 4.1533 -4.4207 -2.9811 18 8 3.6503 -5.3722 -3.5402 19 6 5.4660 -3.8661 -3.4713 20 1 6.2046 -3.9683 -2.6763 21 6 5.9227 -4.6855 -4.6646 22 6 7.3430 -4.2981 -5.0806 23 7 7.2679 -3.1554 -6.0054 24 6 6.9383 -1.9436 -5.5564 25 8 6.8843 -1.0079 -6.3262 26 6 6.6307 -1.7322 -4.0889 27 6 5.2853 -2.3897 -3.7742 28 6 1.8509 -3.6580 -0.1669 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4826 -2.5377 -1.3555 31 1 0.4018 -1.1149 -1.9644 32 1 0.2060 -2.9608 -3.6692 33 1 1.8928 -2.5492 -3.2744 34 1 0.3003 -4.8472 -2.0488 35 1 1.5379 -5.0129 -3.3170 36 1 1.7028 -6.3166 -0.4872 37 1 2.8199 -6.4945 -1.8616 38 1 3.9222 -6.8323 0.2303 39 1 3.9077 -3.0606 -1.5132 40 1 5.9020 -5.7431 -4.4021 41 1 5.2445 -4.5110 -5.4999 42 1 7.9187 -4.0175 -4.1986 43 1 7.8209 -5.1414 -5.5792 44 1 7.4590 -3.2847 -6.9476 45 1 7.4120 -2.1890 -3.4814 46 1 6.5782 -0.6646 -3.8758 47 1 4.6224 -2.2779 -4.6322 48 1 4.8387 -1.8981 -2.9101 49 1 2.6649 -3.5927 0.5549 50 1 0.9946 -4.1550 0.2889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754855307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -133.682609 kcal Electronic energy + Delta-G solvation = -32441.947866 eV Core-core repulsion = 28275.074262 eV Total energy + Delta-G solvation = -4166.873604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81270 -40.89936 -39.18731 -37.48057 -37.22130 -35.45893 -35.01374 -33.73023 -32.37648 -32.05812 -31.35760 -27.92607 -27.27754 -26.59417 -25.08927 -23.99480 -23.29226 -22.30849 -20.92515 -20.70912 -20.03475 -18.67246 -18.54901 -18.14106 -18.09385 -17.45513 -16.85398 -16.54686 -16.25647 -15.99900 -15.77625 -15.35650 -15.16229 -15.06910 -14.77140 -14.66324 -14.58140 -14.33091 -14.20727 -13.88055 -13.51966 -13.44444 -13.17467 -13.12055 -12.98107 -12.83748 -12.73571 -12.47601 -12.41995 -12.16285 -11.94179 -11.85987 -11.80597 -11.64888 -11.49924 -11.19688 -10.95189 -10.85063 -10.50569 -10.26907 -10.09962 -9.74582 -8.76160 -7.90874 -5.24183 1.47451 1.52740 1.58579 1.61501 1.83567 2.36656 2.41323 2.52763 3.22218 3.33612 3.49929 3.60336 3.65680 3.77201 3.83799 4.02716 4.08006 4.22187 4.26298 4.32284 4.36539 4.43058 4.50791 4.53553 4.57437 4.64138 4.71876 4.75932 4.78409 4.88469 4.89287 4.97200 5.04767 5.07503 5.07542 5.16852 5.19120 5.26355 5.36852 5.45876 5.60161 5.72806 5.79293 5.91747 6.28212 6.34412 6.82359 6.97399 7.11960 7.25395 7.44965 7.84480 8.38432 9.15969 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.004777 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.719928 B = 5860.216212 C = 7784.006607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.038 4.038 3 Si 0.945 3.055 4 H -0.293 1.293 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.261 4.261 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.113 4.113 13 C 0.171 3.829 14 C 0.079 3.921 15 O -0.575 6.575 16 N -0.690 5.690 17 C 0.516 3.484 18 O -0.575 6.575 19 C -0.099 4.099 20 H 0.126 0.874 21 C -0.115 4.115 22 C 0.111 3.889 23 N -0.714 5.714 24 C 0.512 3.488 25 O -0.610 6.610 26 C -0.130 4.130 27 C -0.102 4.102 28 C 0.152 3.848 29 H 0.248 0.752 30 H -0.002 1.002 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.404 0.596 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.404 0.596 45 H 0.128 0.872 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.185 -14.738 -6.001 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.235 4.235 3 Si 0.774 3.226 4 H -0.220 1.220 5 H -0.230 1.230 6 H -0.184 1.184 7 C -0.391 4.391 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.160 4.160 12 C -0.151 4.151 13 C 0.082 3.918 14 C -0.001 4.001 15 O -0.382 6.382 16 N -0.339 5.339 17 C 0.303 3.697 18 O -0.456 6.456 19 C -0.120 4.120 20 H 0.144 0.856 21 C -0.154 4.154 22 C -0.012 4.012 23 N -0.364 5.364 24 C 0.300 3.700 25 O -0.493 6.493 26 C -0.170 4.170 27 C -0.140 4.140 28 C 0.026 3.974 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.240 0.760 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.240 0.760 45 H 0.146 0.854 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.637 -14.163 -6.588 21.407 hybrid contribution -0.421 1.002 -0.018 1.087 sum 14.216 -13.161 -6.605 20.468 Atomic orbital electron populations 1.70334 1.06989 1.25930 1.53427 1.25519 0.95312 1.01283 1.01403 0.85583 0.79231 0.80684 0.77056 1.21992 1.23029 1.18425 1.19389 0.98828 0.88049 1.32789 0.90810 1.44255 1.49587 1.00809 1.37324 1.20521 0.89883 0.97576 0.86692 1.21870 1.00392 0.95796 0.97968 1.21687 0.97613 0.96911 0.98937 1.20687 0.84870 0.92011 0.94190 1.22391 0.89337 0.95503 0.92841 1.86449 1.51326 1.35110 1.65337 1.45853 1.25747 1.30417 1.31911 1.20981 0.86855 0.82779 0.79058 1.90571 1.67275 1.29948 1.57834 1.21062 0.95066 0.94853 1.00976 0.85583 1.21589 0.97006 1.00582 0.96249 1.22051 0.95818 0.88431 0.94892 1.46021 1.68683 1.08612 1.13078 1.21010 0.74672 0.82409 0.91884 1.90731 1.55238 1.43304 1.59988 1.21946 0.99129 1.04022 0.91857 1.21136 0.96557 0.93898 1.02416 1.21025 0.97493 0.85418 0.93466 0.94293 0.98345 0.93986 0.92151 0.93242 0.91696 0.90718 0.92539 0.92175 0.75923 0.76028 0.89029 0.92949 0.88059 0.86023 0.76001 0.85413 0.88783 0.93507 0.90104 0.91813 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 11.96 21.65 0.26 -53.24 16 2 C -0.04 -2.04 4.54 84.86 0.39 -1.65 16 3 Si 0.95 43.32 29.65 68.60 2.03 45.35 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.26 -13.30 9.50 84.03 0.80 -12.50 16 8 H 0.07 3.62 7.97 -2.91 -0.02 3.60 16 9 N -0.60 -27.67 2.88 -699.91 -2.02 -29.69 16 10 C 0.18 8.34 5.45 86.36 0.47 8.81 16 11 C -0.12 -4.59 5.93 30.67 0.18 -4.41 16 12 C -0.11 -3.79 4.51 30.62 0.14 -3.65 16 13 C 0.17 5.46 0.45 3.54 0.00 5.46 16 14 C 0.08 2.09 5.60 71.98 0.40 2.50 16 15 O -0.58 -13.89 13.07 -148.98 -1.95 -15.84 16 16 N -0.69 -20.36 3.79 -423.22 -1.60 -21.96 16 17 C 0.52 13.78 6.55 87.66 0.57 14.35 16 18 O -0.58 -17.91 12.06 -3.04 -0.04 -17.95 16 19 C -0.10 -1.83 2.06 -12.34 -0.03 -1.86 16 20 H 0.13 1.66 7.87 -2.39 -0.02 1.64 16 21 C -0.12 -1.79 4.39 30.19 0.13 -1.65 16 22 C 0.11 0.99 6.47 86.24 0.56 1.55 16 23 N -0.71 -11.02 5.27 -462.59 -2.44 -13.46 16 24 C 0.51 11.94 7.07 88.11 0.62 12.57 16 25 O -0.61 -20.72 17.92 -3.04 -0.05 -20.77 16 26 C -0.13 -2.42 5.57 30.08 0.17 -2.25 16 27 C -0.10 -2.20 4.87 30.20 0.15 -2.05 16 28 C 0.15 5.88 5.03 86.22 0.43 6.31 16 29 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 31 H 0.04 2.22 6.32 -2.39 -0.02 2.21 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.93 7.53 -2.39 -0.02 1.91 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.52 6.21 -2.39 -0.01 2.51 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.66 6.35 -2.39 -0.02 1.65 16 38 H 0.39 5.65 9.12 -74.06 -0.68 4.97 16 39 H 0.40 12.37 7.29 -92.71 -0.68 11.70 16 40 H 0.09 1.40 7.74 -2.39 -0.02 1.38 16 41 H 0.05 1.09 8.05 -2.39 -0.02 1.07 16 42 H 0.10 0.54 6.71 -2.39 -0.02 0.52 16 43 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.40 5.61 8.91 -92.71 -0.83 4.78 16 45 H 0.13 1.42 6.77 -2.39 -0.02 1.40 16 46 H 0.09 1.96 8.13 -2.39 -0.02 1.94 16 47 H 0.05 1.25 7.86 -2.39 -0.02 1.23 16 48 H 0.08 1.92 6.89 -2.39 -0.02 1.91 16 49 H 0.06 2.50 7.77 -2.39 -0.02 2.48 16 50 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.86 380.56 -2.01 -75.87 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -1.19 Total: 30.18 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 4.99 Total: 21.51 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.80 Total: -118.35 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -2.04 Total: -54.56 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.86 -2.01 -75.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754855307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.814 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds