Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86790 * 120.00349 * 2 1 4 4 H 1.48503 * 109.47272 * 271.86249 * 3 2 1 5 5 H 1.48501 * 109.47186 * 31.86035 * 3 2 1 6 6 H 1.48499 * 109.47449 * 151.85972 * 3 2 1 7 7 C 1.38817 * 119.99355 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00599 * 342.51341 * 7 2 1 9 9 N 1.36939 * 119.99569 * 162.51508 * 7 2 1 10 10 C 1.46928 * 120.63161 * 148.87372 * 9 7 2 11 11 C 1.53188 * 108.89586 * 126.30191 * 10 9 7 12 12 C 1.53350 * 109.15031 * 54.57391 * 11 10 9 13 13 C 1.53041 * 109.61145 * 298.71740 * 12 11 10 14 14 C 1.52998 * 109.52278 * 181.34038 * 13 12 11 15 15 O 1.42897 * 109.46896 * 175.33267 * 14 13 12 16 16 N 1.46502 * 109.49349 * 301.42276 * 13 12 11 17 17 C 1.34773 * 119.99771 * 301.64720 * 16 13 12 18 18 O 1.21276 * 120.00092 * 354.70025 * 17 16 13 19 19 C 1.50705 * 119.99834 * 174.69950 * 17 16 13 20 20 H 1.09000 * 108.56228 * 297.93908 * 19 17 16 21 21 C 1.51777 * 108.61349 * 180.02562 * 19 17 16 22 22 C 1.52997 * 110.87719 * 171.87909 * 21 19 17 23 23 N 1.47193 * 108.66478 * 86.46845 * 22 21 19 24 24 C 1.33364 * 120.42955 * 288.04119 * 23 22 21 25 25 O 1.21276 * 119.89592 * 180.28709 * 24 23 22 26 26 C 1.51428 * 120.21697 * 0.30292 * 24 23 22 27 27 C 1.51791 * 108.61362 * 55.73835 * 19 17 16 28 28 C 1.46925 * 120.63151 * 328.85691 * 9 7 2 29 29 H 0.96997 * 119.99350 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58509 * 246.16212 * 10 9 7 31 31 H 1.08998 * 109.58484 * 6.43956 * 10 9 7 32 32 H 1.08992 * 109.49948 * 174.66245 * 11 10 9 33 33 H 1.09004 * 109.49219 * 294.75549 * 11 10 9 34 34 H 1.08999 * 109.41848 * 178.67893 * 12 11 10 35 35 H 1.08997 * 109.42634 * 58.76373 * 12 11 10 36 36 H 1.09002 * 109.46599 * 295.32651 * 14 13 12 37 37 H 1.08997 * 109.47190 * 55.32776 * 14 13 12 38 38 H 0.96696 * 114.00411 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99762 * 121.65819 * 16 13 12 40 40 H 1.09000 * 109.19757 * 292.23802 * 21 19 17 41 41 H 1.08997 * 109.19869 * 51.51962 * 21 19 17 42 42 H 1.09004 * 109.59806 * 206.22043 * 22 21 19 43 43 H 1.08999 * 109.60461 * 326.54682 * 22 21 19 44 44 H 0.97008 * 119.78151 * 108.06045 * 23 22 21 45 45 H 1.08999 * 109.63559 * 190.91257 * 26 24 23 46 46 H 1.08998 * 109.63597 * 311.51212 * 26 24 23 47 47 H 1.09003 * 109.22698 * 308.25384 * 27 19 17 48 48 H 1.09009 * 109.22437 * 67.60483 * 27 19 17 49 49 H 1.09001 * 109.58709 * 353.41209 * 28 9 7 50 50 H 1.08994 * 109.58948 * 113.70118 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4584 2.0691 -1.3994 5 1 1.4680 2.6409 0.7390 6 1 3.5670 1.4290 0.6603 7 6 2.0102 -1.2023 0.0005 8 1 1.5076 -2.1158 0.2820 9 7 3.3321 -1.2299 -0.3558 10 6 4.2465 -2.2162 0.2358 11 6 4.9535 -2.9756 -0.8912 12 6 5.6312 -1.9686 -1.8284 13 6 4.5741 -1.0523 -2.4487 14 6 5.2485 -0.0703 -3.4088 15 8 4.2510 0.7117 -4.0687 16 7 3.5966 -1.8601 -3.1823 17 6 4.0027 -2.6607 -4.1875 18 8 5.1604 -2.6411 -4.5485 19 6 3.0183 -3.5804 -4.8630 20 1 2.6397 -4.2865 -4.1240 21 6 3.7449 -4.3563 -5.9463 22 6 2.8463 -5.4478 -6.5312 23 7 2.0390 -4.8631 -7.6143 24 6 1.0424 -4.0220 -7.3353 25 8 0.3801 -3.5499 -8.2349 26 6 0.7351 -3.6541 -5.8989 27 6 1.8553 -2.7516 -5.3775 28 6 3.8630 -0.2740 -1.3372 29 1 -0.4849 0.8401 -0.0004 30 1 4.9861 -1.7052 0.8522 31 1 3.6806 -2.9169 0.8496 32 1 5.7027 -3.6432 -0.4658 33 1 4.2224 -3.5585 -1.4516 34 1 6.1555 -2.5055 -2.6190 35 1 6.3442 -1.3694 -1.2621 36 1 5.9135 0.5869 -2.8484 37 1 5.8249 -0.6243 -4.1497 38 1 4.6074 1.3577 -4.6937 39 1 2.6571 -1.8186 -2.9446 40 1 4.0403 -3.6713 -6.7411 41 1 4.6368 -4.8163 -5.5208 42 1 3.4623 -6.2544 -6.9287 43 1 2.1907 -5.8378 -5.7527 44 1 2.2331 -5.0912 -8.5369 45 1 -0.2150 -3.1220 -5.8523 46 1 0.6818 -4.5583 -5.2926 47 1 1.4700 -2.1322 -4.5675 48 1 2.2028 -2.1084 -6.1861 49 1 3.0438 0.3052 -1.7632 50 1 4.5695 0.3969 -0.8486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754855308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -103.820016 kcal Electronic energy + Delta-G solvation = -32608.359452 eV Core-core repulsion = 28442.780787 eV Total energy + Delta-G solvation = -4165.578665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75172 -39.84346 -38.00272 -36.35768 -36.09987 -34.16606 -33.80715 -32.52925 -31.18551 -30.77913 -30.26967 -27.08558 -25.57739 -25.34003 -24.21320 -22.54982 -22.33383 -20.67483 -19.97262 -19.79503 -18.81710 -17.69289 -17.28626 -16.99878 -16.92864 -16.46177 -15.64450 -15.24628 -15.06329 -14.67141 -14.43547 -14.19807 -14.06289 -13.86109 -13.66026 -13.47219 -13.44434 -13.23977 -12.80331 -12.63647 -12.49552 -12.36575 -12.18155 -11.85729 -11.81545 -11.63283 -11.54219 -11.26949 -10.99809 -10.82505 -10.74637 -10.54638 -10.32573 -10.11710 -9.87101 -9.84539 -9.75458 -9.56695 -9.30736 -9.08354 -8.68211 -8.50176 -7.00663 -6.02937 -3.44283 2.56942 2.94527 3.16511 3.33035 3.44989 3.46203 3.50298 4.35925 4.44337 4.47702 4.51236 4.64133 4.67800 4.87220 4.99190 5.07622 5.16878 5.19460 5.28723 5.33550 5.37827 5.40897 5.49195 5.54188 5.59982 5.62570 5.72125 5.82329 5.83164 5.93329 6.05141 6.08841 6.12572 6.14369 6.18832 6.27563 6.32878 6.49165 6.60522 6.65035 6.67805 6.84229 7.02454 7.10383 7.86230 7.90855 8.04358 8.13277 8.26377 8.61429 8.85768 9.63496 10.02457 11.12331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.004236 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.658709 B = 6607.889738 C = 7334.582103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.878 3.122 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.086 0.914 9 N -0.604 5.604 10 C 0.145 3.855 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.167 3.833 14 C 0.064 3.936 15 O -0.562 6.562 16 N -0.686 5.686 17 C 0.519 3.481 18 O -0.557 6.557 19 C -0.108 4.108 20 H 0.098 0.902 21 C -0.120 4.120 22 C 0.108 3.892 23 N -0.725 5.725 24 C 0.519 3.481 25 O -0.555 6.555 26 C -0.137 4.137 27 C -0.106 4.106 28 C 0.128 3.872 29 H 0.264 0.736 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.370 0.630 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.398 0.602 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 -9.274 -9.914 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.169 4.169 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.019 3.981 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.078 3.922 14 C -0.015 4.015 15 O -0.366 6.366 16 N -0.336 5.336 17 C 0.305 3.695 18 O -0.436 6.436 19 C -0.129 4.129 20 H 0.116 0.884 21 C -0.159 4.159 22 C -0.016 4.016 23 N -0.378 5.378 24 C 0.306 3.694 25 O -0.434 6.434 26 C -0.177 4.177 27 C -0.144 4.144 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.216 0.784 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.234 0.766 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.396 -9.238 -9.957 16.516 hybrid contribution 0.591 1.341 -0.391 1.517 sum 9.987 -7.897 -10.348 16.407 Atomic orbital electron populations 1.69789 1.05700 1.26703 1.52509 1.25359 0.95213 0.97559 0.98762 0.87009 0.79862 0.84736 0.77628 1.20778 1.23141 1.19709 1.18867 0.83293 0.94326 1.42996 0.89673 1.44340 1.06929 1.36907 1.44518 1.20996 0.92371 0.91650 0.93043 1.21966 0.99174 0.97563 0.98064 1.21793 0.97074 0.97977 0.99122 1.20913 0.89650 0.90308 0.91324 1.22666 0.90463 0.92762 0.95647 1.86548 1.35366 1.54110 1.60562 1.45842 1.12014 1.42558 1.33171 1.20396 0.88818 0.80589 0.79678 1.90568 1.19448 1.68960 1.64665 1.21026 0.95581 0.97628 0.98701 0.88402 1.21621 0.98397 0.97640 0.98255 1.21821 0.93856 0.95657 0.90298 1.45988 1.34008 1.47308 1.10464 1.20674 0.79095 0.77564 0.92070 1.90746 1.50208 1.53582 1.48822 1.21988 1.01261 1.01889 0.92549 1.21223 0.93305 0.97581 1.02326 1.21601 0.97830 0.91951 0.88482 0.92642 0.96055 0.91873 0.92651 0.92083 0.90609 0.91933 0.93942 0.91595 0.78409 0.75195 0.90644 0.89466 0.89269 0.90283 0.76616 0.87832 0.88911 0.89259 0.91009 0.89582 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.97 55.49 0.78 -25.56 16 2 C 0.03 0.85 5.26 -17.43 -0.09 0.76 16 3 Si 0.88 21.72 24.34 -169.99 -4.14 17.58 16 4 H -0.28 -6.87 6.65 56.52 0.38 -6.49 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.63 6.59 56.52 0.37 -6.26 16 7 C -0.27 -6.86 10.02 -15.06 -0.15 -7.01 16 8 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 9 N -0.60 -13.14 2.64 -172.32 -0.45 -13.60 16 10 C 0.15 2.67 6.50 -3.71 -0.02 2.64 16 11 C -0.13 -2.01 5.96 -26.45 -0.16 -2.16 16 12 C -0.12 -1.91 4.45 -26.53 -0.12 -2.02 16 13 C 0.17 2.86 0.45 -131.70 -0.06 2.80 16 14 C 0.06 1.01 5.67 37.16 0.21 1.22 16 15 O -0.56 -9.13 13.06 -35.23 -0.46 -9.59 16 16 N -0.69 -11.21 3.82 -47.49 -0.18 -11.39 16 17 C 0.52 7.64 6.52 -10.98 -0.07 7.57 16 18 O -0.56 -9.18 12.06 5.56 0.07 -9.12 16 19 C -0.11 -1.21 2.06 -93.00 -0.19 -1.40 16 20 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 21 C -0.12 -1.14 4.39 -27.35 -0.12 -1.26 16 22 C 0.11 0.75 6.46 -3.67 -0.02 0.72 16 23 N -0.73 -6.58 5.27 -59.90 -0.32 -6.89 16 24 C 0.52 6.42 7.06 -11.26 -0.08 6.35 16 25 O -0.56 -9.30 17.92 5.56 0.10 -9.20 16 26 C -0.14 -1.48 5.57 -27.52 -0.15 -1.63 16 27 C -0.11 -1.25 4.87 -27.34 -0.13 -1.39 16 28 C 0.13 2.63 2.74 -3.71 -0.01 2.62 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.99 7.51 -51.93 -0.39 0.60 16 34 H 0.08 1.21 6.28 -51.93 -0.33 0.88 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.06 6.27 -51.93 -0.33 0.73 16 38 H 0.37 4.26 9.12 45.56 0.42 4.67 16 39 H 0.41 7.27 7.31 -40.82 -0.30 6.97 16 40 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.09 0.84 7.74 -51.93 -0.40 0.44 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.48 6.72 -51.93 -0.35 0.13 16 44 H 0.40 3.18 8.91 -40.82 -0.36 2.82 16 45 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 46 H 0.09 0.80 6.77 -51.93 -0.35 0.44 16 47 H 0.09 1.16 6.87 -51.93 -0.36 0.80 16 48 H 0.07 0.95 7.86 -51.92 -0.41 0.54 16 49 H 0.09 2.01 4.60 -51.93 -0.24 1.77 16 50 H 0.04 0.75 6.96 -51.93 -0.36 0.39 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -33.46 373.41 -7.30 -40.76 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.14 Total: 13.57 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.17 Total: 7.81 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.18 Total: -57.44 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.29 Total: -27.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.46 -7.30 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754855308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.058 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds