Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86790 * 120.00349 * 2 1 4 4 H 1.48503 * 109.47272 * 271.86249 * 3 2 1 5 5 H 1.48501 * 109.47186 * 31.86035 * 3 2 1 6 6 H 1.48499 * 109.47449 * 151.85972 * 3 2 1 7 7 C 1.38817 * 119.99355 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00599 * 342.51341 * 7 2 1 9 9 N 1.36939 * 119.99569 * 162.51508 * 7 2 1 10 10 C 1.46928 * 120.63161 * 148.87372 * 9 7 2 11 11 C 1.53188 * 108.89586 * 126.30191 * 10 9 7 12 12 C 1.53350 * 109.15031 * 54.57391 * 11 10 9 13 13 C 1.53041 * 109.61145 * 298.71740 * 12 11 10 14 14 C 1.52998 * 109.52278 * 181.34038 * 13 12 11 15 15 O 1.42897 * 109.46896 * 175.33267 * 14 13 12 16 16 N 1.46502 * 109.49349 * 301.42276 * 13 12 11 17 17 C 1.34773 * 119.99771 * 301.64720 * 16 13 12 18 18 O 1.21276 * 120.00092 * 354.70025 * 17 16 13 19 19 C 1.50705 * 119.99834 * 174.69950 * 17 16 13 20 20 H 1.09000 * 108.56228 * 297.93908 * 19 17 16 21 21 C 1.51777 * 108.61349 * 180.02562 * 19 17 16 22 22 C 1.52997 * 110.87719 * 171.87909 * 21 19 17 23 23 N 1.47193 * 108.66478 * 86.46845 * 22 21 19 24 24 C 1.33364 * 120.42955 * 288.04119 * 23 22 21 25 25 O 1.21276 * 119.89592 * 180.28709 * 24 23 22 26 26 C 1.51428 * 120.21697 * 0.30292 * 24 23 22 27 27 C 1.51791 * 108.61362 * 55.73835 * 19 17 16 28 28 C 1.46925 * 120.63151 * 328.85691 * 9 7 2 29 29 H 0.96997 * 119.99350 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58509 * 246.16212 * 10 9 7 31 31 H 1.08998 * 109.58484 * 6.43956 * 10 9 7 32 32 H 1.08992 * 109.49948 * 174.66245 * 11 10 9 33 33 H 1.09004 * 109.49219 * 294.75549 * 11 10 9 34 34 H 1.08999 * 109.41848 * 178.67893 * 12 11 10 35 35 H 1.08997 * 109.42634 * 58.76373 * 12 11 10 36 36 H 1.09002 * 109.46599 * 295.32651 * 14 13 12 37 37 H 1.08997 * 109.47190 * 55.32776 * 14 13 12 38 38 H 0.96696 * 114.00411 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99762 * 121.65819 * 16 13 12 40 40 H 1.09000 * 109.19757 * 292.23802 * 21 19 17 41 41 H 1.08997 * 109.19869 * 51.51962 * 21 19 17 42 42 H 1.09004 * 109.59806 * 206.22043 * 22 21 19 43 43 H 1.08999 * 109.60461 * 326.54682 * 22 21 19 44 44 H 0.97008 * 119.78151 * 108.06045 * 23 22 21 45 45 H 1.08999 * 109.63559 * 190.91257 * 26 24 23 46 46 H 1.08998 * 109.63597 * 311.51212 * 26 24 23 47 47 H 1.09003 * 109.22698 * 308.25384 * 27 19 17 48 48 H 1.09009 * 109.22437 * 67.60483 * 27 19 17 49 49 H 1.09001 * 109.58709 * 353.41209 * 28 9 7 50 50 H 1.08994 * 109.58948 * 113.70118 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4584 2.0691 -1.3994 5 1 1.4680 2.6409 0.7390 6 1 3.5670 1.4290 0.6603 7 6 2.0102 -1.2023 0.0005 8 1 1.5076 -2.1158 0.2820 9 7 3.3321 -1.2299 -0.3558 10 6 4.2465 -2.2162 0.2358 11 6 4.9535 -2.9756 -0.8912 12 6 5.6312 -1.9686 -1.8284 13 6 4.5741 -1.0523 -2.4487 14 6 5.2485 -0.0703 -3.4088 15 8 4.2510 0.7117 -4.0687 16 7 3.5966 -1.8601 -3.1823 17 6 4.0027 -2.6607 -4.1875 18 8 5.1604 -2.6411 -4.5485 19 6 3.0183 -3.5804 -4.8630 20 1 2.6397 -4.2865 -4.1240 21 6 3.7449 -4.3563 -5.9463 22 6 2.8463 -5.4478 -6.5312 23 7 2.0390 -4.8631 -7.6143 24 6 1.0424 -4.0220 -7.3353 25 8 0.3801 -3.5499 -8.2349 26 6 0.7351 -3.6541 -5.8989 27 6 1.8553 -2.7516 -5.3775 28 6 3.8630 -0.2740 -1.3372 29 1 -0.4849 0.8401 -0.0004 30 1 4.9861 -1.7052 0.8522 31 1 3.6806 -2.9169 0.8496 32 1 5.7027 -3.6432 -0.4658 33 1 4.2224 -3.5585 -1.4516 34 1 6.1555 -2.5055 -2.6190 35 1 6.3442 -1.3694 -1.2621 36 1 5.9135 0.5869 -2.8484 37 1 5.8249 -0.6243 -4.1497 38 1 4.6074 1.3577 -4.6937 39 1 2.6571 -1.8186 -2.9446 40 1 4.0403 -3.6713 -6.7411 41 1 4.6368 -4.8163 -5.5208 42 1 3.4623 -6.2544 -6.9287 43 1 2.1907 -5.8378 -5.7527 44 1 2.2331 -5.0912 -8.5369 45 1 -0.2150 -3.1220 -5.8523 46 1 0.6818 -4.5583 -5.2926 47 1 1.4700 -2.1322 -4.5675 48 1 2.2028 -2.1084 -6.1861 49 1 3.0438 0.3052 -1.7632 50 1 4.5695 0.3969 -0.8486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754855308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -131.670523 kcal Electronic energy + Delta-G solvation = -32609.567141 eV Core-core repulsion = 28442.780787 eV Total energy + Delta-G solvation = -4166.786353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85726 -40.94595 -39.29821 -37.55609 -37.28668 -35.43036 -35.04213 -34.08483 -32.53518 -32.08600 -31.58804 -27.96587 -27.25491 -26.83319 -25.10523 -24.16307 -23.41298 -22.03238 -21.08859 -20.74289 -20.08059 -19.05603 -18.49173 -18.27427 -18.12953 -17.60119 -17.11418 -16.55699 -16.35725 -15.81532 -15.76796 -15.43681 -15.33475 -15.16111 -14.99482 -14.76038 -14.62757 -14.42259 -14.21983 -13.94353 -13.76849 -13.58190 -13.38707 -13.25186 -13.07565 -12.84975 -12.69025 -12.47386 -12.44857 -12.19933 -11.90382 -11.87080 -11.72838 -11.66728 -11.45865 -11.29672 -11.05916 -10.87612 -10.70955 -10.30889 -10.11233 -9.79446 -8.84905 -8.14222 -5.49382 1.34235 1.40766 1.47236 1.60059 1.78995 2.31576 2.39867 2.42944 3.08353 3.25877 3.36462 3.48428 3.58051 3.74750 3.81072 3.93330 4.01588 4.19904 4.20889 4.26325 4.31878 4.41260 4.43725 4.49233 4.51523 4.53860 4.62214 4.71587 4.74679 4.75086 4.80452 4.91018 4.96050 5.03073 5.06311 5.08614 5.14146 5.17306 5.27920 5.35173 5.49734 5.72365 5.91304 5.92681 6.18535 6.26519 6.76226 6.84793 6.94028 7.24427 7.38786 7.63834 8.06791 9.04620 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.004236 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.658709 B = 6607.889738 C = 7334.582103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.020 4.020 3 Si 0.930 3.070 4 H -0.280 1.280 5 H -0.316 1.316 6 H -0.263 1.263 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.165 3.835 14 C 0.068 3.932 15 O -0.584 6.584 16 N -0.692 5.692 17 C 0.518 3.482 18 O -0.572 6.572 19 C -0.101 4.101 20 H 0.120 0.880 21 C -0.113 4.113 22 C 0.110 3.890 23 N -0.712 5.712 24 C 0.515 3.485 25 O -0.608 6.608 26 C -0.131 4.131 27 C -0.097 4.097 28 C 0.131 3.869 29 H 0.259 0.741 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.390 0.610 39 H 0.403 0.597 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.405 0.595 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -11.181 -10.165 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.216 4.216 3 Si 0.761 3.239 4 H -0.207 1.207 5 H -0.245 1.245 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.077 3.923 14 C -0.011 4.011 15 O -0.391 6.391 16 N -0.341 5.341 17 C 0.306 3.694 18 O -0.453 6.453 19 C -0.122 4.122 20 H 0.137 0.863 21 C -0.152 4.152 22 C -0.013 4.013 23 N -0.362 5.362 24 C 0.303 3.697 25 O -0.491 6.491 26 C -0.171 4.171 27 C -0.136 4.136 28 C 0.005 3.995 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.238 0.762 39 H 0.238 0.762 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.142 0.858 43 H 0.116 0.884 44 H 0.241 0.759 45 H 0.112 0.888 46 H 0.141 0.859 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.970 -11.181 -10.219 19.306 hybrid contribution -0.096 1.870 -0.309 1.898 sum 11.874 -9.311 -10.528 18.398 Atomic orbital electron populations 1.69899 1.07046 1.26857 1.55690 1.25823 0.95603 1.00072 1.00098 0.86155 0.78827 0.81632 0.77290 1.20747 1.24545 1.18791 1.18784 0.84889 0.93009 1.40155 0.92110 1.44420 1.06108 1.37767 1.45360 1.21170 0.92010 0.91033 0.94180 1.21856 0.99442 0.97429 0.96859 1.21765 0.96616 0.97768 0.99194 1.20863 0.89887 0.90836 0.90737 1.22628 0.90232 0.92790 0.95491 1.86507 1.36345 1.54870 1.61338 1.45904 1.11341 1.43077 1.33818 1.20924 0.89208 0.80334 0.78963 1.90556 1.20348 1.69439 1.64920 1.21082 0.94453 0.97178 0.99525 0.86266 1.21579 0.98885 0.97720 0.97019 1.22041 0.93862 0.95238 0.90175 1.45985 1.32745 1.45854 1.11661 1.20909 0.79261 0.77540 0.91997 1.90722 1.52347 1.55797 1.50185 1.21945 1.00220 1.02772 0.92174 1.21083 0.93922 0.97527 1.01050 1.21473 0.96931 0.91908 0.89174 0.93164 0.95019 0.92201 0.89672 0.92678 0.90255 0.90758 0.92446 0.91563 0.76188 0.76209 0.92553 0.88929 0.85847 0.88440 0.75852 0.88821 0.85936 0.90792 0.92947 0.92512 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.85 13.97 21.65 0.30 -56.55 16 2 C -0.02 -1.12 5.26 84.86 0.45 -0.67 16 3 Si 0.93 45.63 24.34 68.60 1.67 47.30 16 4 H -0.28 -13.58 6.65 99.48 0.66 -12.92 16 5 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 6 H -0.26 -12.34 6.59 99.48 0.66 -11.68 16 7 C -0.24 -12.37 10.02 84.03 0.84 -11.52 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.61 -26.07 2.64 -699.09 -1.84 -27.91 16 10 C 0.14 4.86 6.50 86.36 0.56 5.42 16 11 C -0.12 -3.28 5.96 30.77 0.18 -3.09 16 12 C -0.12 -3.27 4.45 30.73 0.14 -3.13 16 13 C 0.17 5.40 0.45 3.68 0.00 5.41 16 14 C 0.07 2.03 5.67 71.98 0.41 2.44 16 15 O -0.58 -18.43 13.06 -148.98 -1.95 -20.37 16 16 N -0.69 -21.92 3.82 -422.56 -1.61 -23.53 16 17 C 0.52 14.40 6.52 87.66 0.57 14.97 16 18 O -0.57 -17.70 12.06 -3.02 -0.04 -17.74 16 19 C -0.10 -2.07 2.06 -12.34 -0.03 -2.09 16 20 H 0.12 1.98 7.87 -2.39 -0.02 1.96 16 21 C -0.11 -1.84 4.39 30.19 0.13 -1.70 16 22 C 0.11 1.10 6.46 86.25 0.56 1.66 16 23 N -0.71 -11.35 5.27 -462.59 -2.44 -13.79 16 24 C 0.52 12.33 7.06 88.11 0.62 12.95 16 25 O -0.61 -20.64 17.92 -3.02 -0.05 -20.70 16 26 C -0.13 -2.70 5.57 30.08 0.17 -2.53 16 27 C -0.10 -2.26 4.87 30.20 0.15 -2.11 16 28 C 0.13 5.25 2.74 86.36 0.24 5.49 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.06 2.09 7.93 -2.39 -0.02 2.08 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.62 7.51 -2.38 -0.02 1.60 16 34 H 0.08 2.26 6.28 -2.39 -0.01 2.25 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 2.00 6.27 -2.39 -0.01 1.98 16 38 H 0.39 8.51 9.12 -74.06 -0.68 7.84 16 39 H 0.40 14.20 7.31 -92.71 -0.68 13.52 16 40 H 0.06 1.16 8.05 -2.39 -0.02 1.14 16 41 H 0.09 1.47 7.74 -2.39 -0.02 1.45 16 42 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.10 0.72 6.72 -2.39 -0.02 0.71 16 44 H 0.40 5.64 8.91 -92.70 -0.83 4.81 16 45 H 0.09 2.14 8.13 -2.39 -0.02 2.12 16 46 H 0.12 1.76 6.77 -2.39 -0.02 1.74 16 47 H 0.07 1.96 6.87 -2.39 -0.02 1.94 16 48 H 0.05 1.40 7.86 -2.38 -0.02 1.38 16 49 H 0.06 2.63 4.60 -2.39 -0.01 2.62 16 50 H 0.04 1.43 6.96 -2.39 -0.02 1.41 16 Total: -1.00 -74.34 373.41 -2.25 -76.60 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -1.28 Total: 35.23 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 4.99 Total: 21.47 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.59 Total: -121.79 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.04 Total: -58.81 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.30 kcal Total: -74.34 -2.25 -76.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754855308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.073 kcal (2) G-P(sol) polarization free energy of solvation -74.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds