Wall clock time and date at job start Sat Apr 11 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48494 * 109.47510 * 239.99951 * 3 2 1 5 5 H 1.48501 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46773 * 119.99686 * 3 2 1 7 7 C 1.38955 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99950 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00005 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00029 * 174.69567 * 13 12 10 15 15 C 1.52998 * 112.90606 * 292.29297 * 14 13 12 16 16 N 1.46503 * 109.47233 * 310.79425 * 15 14 13 17 17 C 1.34779 * 119.99798 * 174.81720 * 16 15 14 18 18 O 1.21279 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99697 * 180.02562 * 17 16 15 20 20 C 1.53180 * 109.54330 * 299.55488 * 19 17 16 21 21 C 1.53096 * 109.16539 * 183.15203 * 20 19 17 22 22 O 1.42904 * 109.41358 * 57.61202 * 21 20 19 23 23 C 1.42910 * 114.09509 * 298.83895 * 22 21 20 24 24 C 1.53092 * 109.41088 * 61.16091 * 23 22 21 25 25 C 1.53784 * 113.61695 * 63.54151 * 14 13 12 26 26 C 1.53781 * 87.07725 * 89.11417 * 25 14 13 27 27 C 1.53779 * 113.61590 * 161.04318 * 14 13 12 28 28 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00200 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47255 * 59.99404 * 12 10 9 31 31 H 1.09000 * 109.46793 * 299.99647 * 12 10 9 32 32 H 1.00896 * 110.99455 * 298.64634 * 13 12 10 33 33 H 1.09003 * 109.47580 * 70.80141 * 15 14 13 34 34 H 1.09001 * 109.47281 * 190.79792 * 15 14 13 35 35 H 0.96994 * 119.99677 * 354.82587 * 16 15 14 36 36 H 1.09004 * 109.54531 * 59.81917 * 19 17 16 37 37 H 1.08993 * 109.52520 * 303.06076 * 20 19 17 38 38 H 1.09001 * 109.52293 * 63.24987 * 20 19 17 39 39 H 1.09004 * 109.48225 * 297.62957 * 21 20 19 40 40 H 1.09002 * 109.47859 * 177.59434 * 21 20 19 41 41 H 1.08994 * 109.48034 * 301.18244 * 23 22 21 42 42 H 1.08993 * 109.49051 * 181.14561 * 23 22 21 43 43 H 1.09004 * 109.52385 * 182.48342 * 24 23 22 44 44 H 1.08995 * 109.52456 * 62.29828 * 24 23 22 45 45 H 1.08998 * 113.61213 * 334.56924 * 25 14 13 46 46 H 1.08997 * 113.61800 * 203.66575 * 25 14 13 47 47 H 1.09001 * 113.61017 * 139.98386 * 26 25 14 48 48 H 1.08995 * 113.62006 * 270.88105 * 26 25 14 49 49 H 1.08994 * 113.61637 * 156.33356 * 27 14 13 50 50 H 1.09003 * 113.69009 * 25.43333 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1018 1.6963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1983 -5.9796 -0.0004 14 6 1.5024 -7.2671 0.1259 15 6 0.8415 -7.4552 1.4929 16 7 1.8070 -7.1420 2.5493 17 6 1.4163 -7.1367 3.8392 18 8 0.2657 -7.3918 4.1255 19 6 2.4093 -6.8139 4.9259 20 6 3.5493 -7.8367 4.8986 21 6 4.5112 -7.5481 6.0542 22 8 3.7952 -7.5913 7.2902 23 6 2.7475 -6.6247 7.3916 24 6 1.7148 -6.8762 6.2897 25 6 0.5717 -7.5829 -1.0569 26 6 1.7845 -8.2441 -1.7328 27 6 2.3486 -8.4711 -0.3202 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6173 -4.9205 -0.8912 31 1 0.6168 -4.9209 0.8887 32 1 2.7771 -5.9609 -0.8266 33 1 -0.0173 -6.7891 1.5762 34 1 0.5111 -8.4887 1.5975 35 1 2.7272 -6.9382 2.3204 36 1 2.8115 -5.8134 4.7668 37 1 3.1402 -8.8411 5.0074 38 1 4.0842 -7.7608 3.9519 39 1 4.9507 -6.5593 5.9230 40 1 5.3014 -8.2988 6.0654 41 1 3.1639 -5.6239 7.2778 42 1 2.2671 -6.7100 8.3662 43 1 0.9376 -6.1135 6.3378 44 1 1.2686 -7.8612 6.4266 45 1 0.2114 -6.6959 -1.5779 46 1 -0.2262 -8.2832 -0.8099 47 1 1.5415 -9.1670 -2.2594 48 1 2.3780 -7.5560 -2.3346 49 1 2.0365 -9.4142 0.1282 50 1 3.4230 -8.3025 -0.2470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754976703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:10 Heat of formation + Delta-G solvation = -107.662139 kcal Electronic energy + Delta-G solvation = -30503.855158 eV Core-core repulsion = 26338.109886 eV Total energy + Delta-G solvation = -4165.745272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56882 -39.86592 -38.47255 -37.98536 -34.42800 -34.08456 -33.80788 -32.96035 -31.27825 -31.22381 -28.45731 -26.77771 -25.91492 -25.54261 -24.08206 -23.70061 -22.40625 -21.10032 -19.94702 -19.29496 -18.82414 -17.92620 -17.42480 -16.44473 -16.31717 -16.15961 -16.04311 -15.58122 -15.15762 -15.05650 -14.82064 -14.53614 -14.42312 -14.15959 -13.98548 -13.77160 -13.45759 -13.29384 -13.05287 -12.67702 -12.57546 -12.49180 -12.28462 -11.92829 -11.64739 -11.56278 -11.51770 -11.44780 -11.07572 -10.94284 -10.85983 -10.77442 -10.64223 -10.47175 -10.30803 -10.23301 -10.01905 -9.53265 -9.51425 -8.93886 -8.56151 -8.14875 -7.99729 -6.44561 -3.85786 2.70330 3.17290 3.19173 3.23633 3.27522 3.68810 3.86590 3.95821 4.22163 4.38081 4.42059 4.46450 4.57922 4.60719 4.65035 4.69952 4.80617 5.02081 5.07506 5.14579 5.20705 5.27858 5.29785 5.37191 5.44791 5.47445 5.51893 5.54082 5.57024 5.61548 5.66441 5.67779 5.78003 5.80566 5.89438 5.91301 5.96302 6.02753 6.09165 6.10859 6.24461 6.51910 6.97981 7.11107 7.50936 7.51710 7.64513 8.02200 8.31565 8.57435 9.14335 9.50693 10.01715 10.72968 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.003358 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.070428 B = 8335.155283 C =10757.108432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.639 5.639 14 C 0.081 3.919 15 C 0.143 3.857 16 N -0.710 5.710 17 C 0.518 3.482 18 O -0.549 6.549 19 C -0.111 4.111 20 C -0.145 4.145 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.134 4.134 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.130 4.130 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.353 0.647 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -17.787 5.304 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.270 5.270 14 C -0.012 4.012 15 C 0.019 3.981 16 N -0.361 5.361 17 C 0.304 3.696 18 O -0.427 6.427 19 C -0.132 4.132 20 C -0.183 4.183 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.017 4.017 24 C -0.172 4.172 25 C -0.209 4.209 26 C -0.180 4.180 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.275 -17.854 6.312 19.218 hybrid contribution -0.424 1.215 -1.431 1.925 sum 2.851 -16.639 4.881 17.573 Atomic orbital electron populations 1.69604 1.05952 1.28321 1.50290 1.25264 0.95618 0.99728 0.97231 0.85925 0.78781 0.80486 0.79068 1.19902 1.20946 1.19881 1.19639 0.93302 0.82225 1.47907 0.87986 1.41852 1.09197 1.04608 1.64206 1.19742 0.88351 0.84596 0.84633 1.90515 1.13657 1.87079 1.55554 1.21669 0.94419 0.90762 1.01395 1.59946 1.21263 0.98843 1.46998 1.22371 0.94679 0.91008 0.93160 1.21235 0.91861 1.00349 0.84688 1.45785 1.14638 1.70498 1.05176 1.20491 0.88877 0.76648 0.83594 1.90679 1.19798 1.49241 1.83008 1.21372 0.95780 1.01528 0.94551 1.22178 0.96449 0.99478 1.00208 1.22581 0.93658 1.01879 0.83395 1.87926 1.48109 1.57816 1.36483 1.22643 0.87960 0.91885 0.99201 1.22002 0.98339 1.04345 0.92546 1.23614 0.97678 1.01557 0.98093 1.22820 0.97598 1.01032 0.96540 1.23086 1.00447 0.97191 0.96046 0.91771 0.77505 0.93540 0.89661 0.82678 0.91457 0.91423 0.75343 0.88077 0.90587 0.90100 0.92669 0.88574 0.92880 0.88566 0.90075 0.90303 0.90869 0.89558 0.91225 0.90053 0.89470 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 10 C 0.44 10.03 7.83 -10.98 -0.09 9.94 16 11 O -0.58 -15.10 15.89 5.55 0.09 -15.01 16 12 C 0.05 0.84 5.78 -4.97 -0.03 0.81 16 13 N -0.64 -8.98 5.39 -100.39 -0.54 -9.53 16 14 C 0.08 0.88 0.74 -130.79 -0.10 0.78 16 15 C 0.14 1.72 4.71 -4.04 -0.02 1.70 16 16 N -0.71 -8.72 5.30 -60.29 -0.32 -9.04 16 17 C 0.52 7.08 7.16 -10.99 -0.08 7.00 16 18 O -0.55 -9.37 15.96 5.56 0.09 -9.28 16 19 C -0.11 -1.24 2.61 -91.59 -0.24 -1.47 16 20 C -0.15 -1.31 5.30 -26.59 -0.14 -1.45 16 21 C 0.06 0.54 6.84 37.21 0.25 0.79 16 22 O -0.38 -4.16 10.77 -35.23 -0.38 -4.54 16 23 C 0.06 0.57 6.84 37.20 0.25 0.83 16 24 C -0.13 -1.48 4.73 -26.59 -0.13 -1.60 16 25 C -0.17 -1.68 7.16 -25.92 -0.19 -1.86 16 26 C -0.14 -1.26 7.75 -25.92 -0.20 -1.46 16 27 C -0.13 -1.16 7.31 -25.92 -0.19 -1.35 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 30 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 31 H 0.09 1.43 6.85 -51.93 -0.36 1.07 16 32 H 0.35 5.12 7.79 -39.29 -0.31 4.82 16 33 H 0.07 0.93 7.29 -51.93 -0.38 0.55 16 34 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 35 H 0.41 4.80 7.66 -40.82 -0.31 4.49 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 45 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 46 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.76 7.75 -51.93 -0.40 0.36 16 49 H 0.09 0.69 7.97 -51.93 -0.41 0.28 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -32.20 399.50 -8.67 -40.87 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -8.15 Total: 17.66 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.12 Total: 4.75 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.19 Total: -56.31 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.20 Total: -28.83 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.20 -8.67 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754976703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.790 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds