Wall clock time and date at job start Sat Apr 11 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48494 * 109.47510 * 239.99951 * 3 2 1 5 5 H 1.48501 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46773 * 119.99686 * 3 2 1 7 7 C 1.38955 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99950 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00005 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00029 * 174.69567 * 13 12 10 15 15 C 1.52998 * 112.90606 * 292.29297 * 14 13 12 16 16 N 1.46503 * 109.47233 * 310.79425 * 15 14 13 17 17 C 1.34779 * 119.99798 * 174.81720 * 16 15 14 18 18 O 1.21279 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99697 * 180.02562 * 17 16 15 20 20 C 1.53180 * 109.54330 * 299.55488 * 19 17 16 21 21 C 1.53096 * 109.16539 * 183.15203 * 20 19 17 22 22 O 1.42904 * 109.41358 * 57.61202 * 21 20 19 23 23 C 1.42910 * 114.09509 * 298.83895 * 22 21 20 24 24 C 1.53092 * 109.41088 * 61.16091 * 23 22 21 25 25 C 1.53784 * 113.61695 * 63.54151 * 14 13 12 26 26 C 1.53781 * 87.07725 * 89.11417 * 25 14 13 27 27 C 1.53779 * 113.61590 * 161.04318 * 14 13 12 28 28 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00200 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47255 * 59.99404 * 12 10 9 31 31 H 1.09000 * 109.46793 * 299.99647 * 12 10 9 32 32 H 1.00896 * 110.99455 * 298.64634 * 13 12 10 33 33 H 1.09003 * 109.47580 * 70.80141 * 15 14 13 34 34 H 1.09001 * 109.47281 * 190.79792 * 15 14 13 35 35 H 0.96994 * 119.99677 * 354.82587 * 16 15 14 36 36 H 1.09004 * 109.54531 * 59.81917 * 19 17 16 37 37 H 1.08993 * 109.52520 * 303.06076 * 20 19 17 38 38 H 1.09001 * 109.52293 * 63.24987 * 20 19 17 39 39 H 1.09004 * 109.48225 * 297.62957 * 21 20 19 40 40 H 1.09002 * 109.47859 * 177.59434 * 21 20 19 41 41 H 1.08994 * 109.48034 * 301.18244 * 23 22 21 42 42 H 1.08993 * 109.49051 * 181.14561 * 23 22 21 43 43 H 1.09004 * 109.52385 * 182.48342 * 24 23 22 44 44 H 1.08995 * 109.52456 * 62.29828 * 24 23 22 45 45 H 1.08998 * 113.61213 * 334.56924 * 25 14 13 46 46 H 1.08997 * 113.61800 * 203.66575 * 25 14 13 47 47 H 1.09001 * 113.61017 * 139.98386 * 26 25 14 48 48 H 1.08995 * 113.62006 * 270.88105 * 26 25 14 49 49 H 1.08994 * 113.61637 * 156.33356 * 27 14 13 50 50 H 1.09003 * 113.69009 * 25.43333 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1018 1.6963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1983 -5.9796 -0.0004 14 6 1.5024 -7.2671 0.1259 15 6 0.8415 -7.4552 1.4929 16 7 1.8070 -7.1420 2.5493 17 6 1.4163 -7.1367 3.8392 18 8 0.2657 -7.3918 4.1255 19 6 2.4093 -6.8139 4.9259 20 6 3.5493 -7.8367 4.8986 21 6 4.5112 -7.5481 6.0542 22 8 3.7952 -7.5913 7.2902 23 6 2.7475 -6.6247 7.3916 24 6 1.7148 -6.8762 6.2897 25 6 0.5717 -7.5829 -1.0569 26 6 1.7845 -8.2441 -1.7328 27 6 2.3486 -8.4711 -0.3202 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6173 -4.9205 -0.8912 31 1 0.6168 -4.9209 0.8887 32 1 2.7771 -5.9609 -0.8266 33 1 -0.0173 -6.7891 1.5762 34 1 0.5111 -8.4887 1.5975 35 1 2.7272 -6.9382 2.3204 36 1 2.8115 -5.8134 4.7668 37 1 3.1402 -8.8411 5.0074 38 1 4.0842 -7.7608 3.9519 39 1 4.9507 -6.5593 5.9230 40 1 5.3014 -8.2988 6.0654 41 1 3.1639 -5.6239 7.2778 42 1 2.2671 -6.7100 8.3662 43 1 0.9376 -6.1135 6.3378 44 1 1.2686 -7.8612 6.4266 45 1 0.2114 -6.6959 -1.5779 46 1 -0.2262 -8.2832 -0.8099 47 1 1.5415 -9.1670 -2.2594 48 1 2.3780 -7.5560 -2.3346 49 1 2.0365 -9.4142 0.1282 50 1 3.4230 -8.3025 -0.2470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754976703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:09 Heat of formation + Delta-G solvation = -132.089834 kcal Electronic energy + Delta-G solvation = -30504.914422 eV Core-core repulsion = 26338.109886 eV Total energy + Delta-G solvation = -4166.804536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55819 -40.82748 -39.81455 -39.35416 -36.02269 -35.47731 -34.68954 -34.26816 -33.22363 -32.04573 -29.46686 -28.25917 -26.77562 -26.55582 -25.69444 -24.48438 -23.26831 -22.02869 -21.09173 -20.89685 -19.92616 -19.75140 -18.40708 -17.80145 -17.33974 -17.10155 -16.97987 -16.80616 -16.50237 -16.08104 -16.04472 -15.85928 -15.67120 -15.53113 -15.18256 -14.79600 -14.59587 -14.32140 -14.18547 -14.06583 -13.68263 -13.53479 -13.31502 -13.26280 -13.07992 -12.90812 -12.51688 -12.51342 -12.43592 -12.31479 -12.14078 -11.73847 -11.68216 -11.60012 -11.49711 -11.47601 -11.14492 -10.93877 -10.44756 -10.35221 -10.02473 -10.00432 -9.37703 -8.47215 -5.96239 1.38989 1.41024 1.51877 1.62425 2.04167 2.19372 2.28611 2.81564 2.97264 3.19860 3.43320 3.52544 3.59272 3.66474 3.76097 3.77322 3.81047 3.92719 4.01633 4.25349 4.26770 4.28939 4.34516 4.45024 4.48858 4.53258 4.59703 4.63548 4.69105 4.72907 4.79194 4.82166 4.83699 4.85687 5.06201 5.07295 5.08959 5.12731 5.18196 5.23550 5.33460 5.39960 5.50213 5.88454 6.07397 6.24315 6.37106 6.58167 6.60488 7.11411 7.26085 7.55033 8.09380 8.70003 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.003358 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.070428 B = 8335.155283 C =10757.108432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.082 0.918 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.069 3.931 13 N -0.643 5.643 14 C 0.078 3.922 15 C 0.143 3.857 16 N -0.702 5.702 17 C 0.513 3.487 18 O -0.588 6.588 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.058 3.942 22 O -0.400 6.400 23 C 0.062 3.938 24 C -0.131 4.131 25 C -0.167 4.167 26 C -0.137 4.137 27 C -0.118 4.118 28 H 0.277 0.723 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.352 0.648 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -18.721 4.982 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.100 0.900 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.501 6.501 12 C -0.064 4.064 13 N -0.275 5.275 14 C -0.014 4.014 15 C 0.018 3.982 16 N -0.353 5.353 17 C 0.300 3.700 18 O -0.469 6.469 19 C -0.131 4.131 20 C -0.175 4.175 21 C -0.018 4.018 22 O -0.319 6.319 23 C -0.014 4.014 24 C -0.169 4.169 25 C -0.207 4.207 26 C -0.174 4.174 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.122 0.878 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.101 -18.810 5.971 20.157 hybrid contribution -0.685 1.436 -1.347 2.085 sum 3.416 -17.375 4.624 18.301 Atomic orbital electron populations 1.69676 1.06948 1.29328 1.50366 1.26048 0.96483 1.02478 0.96286 0.84998 0.77756 0.76628 0.79039 1.19498 1.19717 1.19654 1.19642 0.92746 0.83924 1.49930 0.90026 1.41944 1.09223 1.04859 1.65161 1.20729 0.88265 0.85851 0.82243 1.90484 1.15388 1.87884 1.56394 1.21406 0.94137 0.88574 1.02265 1.59880 1.21112 0.99386 1.47101 1.22429 0.95763 0.90234 0.92943 1.21289 0.91264 1.00484 0.85122 1.45789 1.14849 1.69664 1.04963 1.20956 0.88745 0.75918 0.84368 1.90656 1.21471 1.51189 1.83598 1.21407 0.95886 1.02221 0.93621 1.22149 0.95723 0.98340 1.01298 1.22752 0.93708 1.02958 0.82407 1.87908 1.48327 1.58193 1.37504 1.22680 0.87474 0.92080 0.99180 1.21955 0.98558 1.03161 0.93275 1.23627 0.98306 1.01571 0.97202 1.22794 0.96633 1.01491 0.96499 1.23068 1.00145 0.96514 0.95819 0.91365 0.77319 0.91766 0.89461 0.82770 0.93552 0.90218 0.74843 0.87968 0.91060 0.88577 0.92042 0.86668 0.92129 0.87314 0.91166 0.91650 0.92014 0.88154 0.89525 0.90667 0.87797 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16 10 C 0.44 20.30 7.83 87.66 0.69 20.98 16 11 O -0.62 -32.26 15.89 -3.06 -0.05 -32.30 16 12 C 0.07 2.27 5.78 85.56 0.49 2.76 16 13 N -0.64 -17.45 5.39 -471.54 -2.54 -19.99 16 14 C 0.08 1.58 0.74 4.05 0.00 1.58 16 15 C 0.14 3.29 4.71 86.38 0.41 3.69 16 16 N -0.70 -16.74 5.30 -463.06 -2.45 -19.19 16 17 C 0.51 14.01 7.16 87.66 0.63 14.64 16 18 O -0.59 -20.45 15.96 -3.03 -0.05 -20.50 16 19 C -0.11 -2.41 2.61 -11.42 -0.03 -2.44 16 20 C -0.14 -2.29 5.30 30.69 0.16 -2.13 16 21 C 0.06 0.91 6.84 72.01 0.49 1.41 16 22 O -0.40 -8.15 10.77 -148.98 -1.60 -9.75 16 23 C 0.06 1.15 6.84 72.01 0.49 1.64 16 24 C -0.13 -2.91 4.73 30.68 0.15 -2.77 16 25 C -0.17 -2.95 7.16 31.12 0.22 -2.73 16 26 C -0.14 -2.06 7.75 31.12 0.24 -1.82 16 27 C -0.12 -1.78 7.31 31.12 0.23 -1.56 16 28 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.39 19.40 7.90 -92.71 -0.73 18.66 16 30 H 0.06 1.93 6.70 -2.39 -0.02 1.91 16 31 H 0.09 2.90 6.85 -2.39 -0.02 2.89 16 32 H 0.35 9.85 7.79 -89.70 -0.70 9.15 16 33 H 0.05 1.27 7.29 -2.39 -0.02 1.25 16 34 H 0.08 1.66 7.95 -2.39 -0.02 1.65 16 35 H 0.41 9.21 7.66 -92.71 -0.71 8.50 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.31 7.70 -2.39 -0.02 1.29 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.06 1.61 8.02 -2.39 -0.02 1.59 16 45 H 0.06 1.25 6.62 -2.39 -0.02 1.23 16 46 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 49 H 0.10 1.29 7.97 -2.39 -0.02 1.27 16 50 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.07 399.50 -1.72 -71.79 By element: Atomic # 1 Polarization: 51.89 SS G_CDS: -1.16 Total: 50.73 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.45 Total: 15.16 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -6.33 Total: -119.74 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -1.70 Total: -62.55 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.07 -1.72 -71.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754976703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.300 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds