Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46965 * 269.99735 * 3 2 1 5 5 H 1.48499 * 109.47443 * 29.99941 * 3 2 1 6 6 H 1.48505 * 109.47146 * 149.99987 * 3 2 1 7 7 C 1.38946 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00479 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99923 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00310 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47210 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00046 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46836 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.51447 * 304.89932 * 15 14 13 17 17 C 1.52882 * 109.57823 * 184.88093 * 15 14 13 18 18 N 1.47149 * 108.60546 * 187.92655 * 17 15 14 19 19 C 1.34780 * 120.97953 * 230.49849 * 18 17 15 20 20 O 1.21284 * 120.00128 * 359.72100 * 19 18 17 21 21 C 1.50706 * 119.99897 * 179.71613 * 19 18 17 22 22 C 1.53003 * 109.46816 * 180.02562 * 21 19 18 23 23 C 1.53779 * 113.61005 * 185.00289 * 22 21 19 24 24 C 1.53787 * 87.07963 * 219.93029 * 23 22 21 25 25 C 1.53779 * 113.69268 * 87.46527 * 22 21 19 26 26 C 1.47154 * 118.04054 * 50.22851 * 18 17 15 27 27 C 1.53300 * 108.38004 * 309.71673 * 26 18 17 28 28 O 1.42956 * 109.51298 * 65.00556 * 15 14 13 29 29 H 0.97005 * 120.00477 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99603 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47169 * 59.99388 * 12 10 9 32 32 H 1.09001 * 109.46885 * 299.99789 * 12 10 9 33 33 H 1.00899 * 110.99868 * 303.95244 * 13 12 10 34 34 H 1.08997 * 109.46923 * 60.00284 * 14 13 12 35 35 H 1.09004 * 109.47202 * 299.99962 * 14 13 12 36 36 H 1.09002 * 109.61865 * 68.10486 * 17 15 14 37 37 H 1.09000 * 109.52456 * 307.68777 * 17 15 14 38 38 H 1.08996 * 109.47119 * 60.00471 * 21 19 18 39 39 H 1.08996 * 109.46848 * 300.00120 * 21 19 18 40 40 H 1.09006 * 112.85187 * 316.19488 * 22 21 19 41 41 H 1.08997 * 113.61646 * 105.38661 * 23 22 21 42 42 H 1.09000 * 113.61527 * 334.47932 * 23 22 21 43 43 H 1.09004 * 113.61202 * 139.98084 * 24 23 22 44 44 H 1.08994 * 113.61447 * 270.88515 * 24 23 22 45 45 H 1.09002 * 113.61557 * 25.44212 * 25 22 21 46 46 H 1.09004 * 113.61501 * 254.53633 * 25 22 21 47 47 H 1.09000 * 109.68189 * 69.43799 * 26 18 17 48 48 H 1.08997 * 109.68041 * 189.95878 * 26 18 17 49 49 H 1.08998 * 109.50874 * 172.22131 * 27 26 18 50 50 H 1.08997 * 109.50928 * 292.32492 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.4980 -7.2709 0.0018 15 6 2.5229 -8.4068 0.0019 16 1 3.2033 -8.2834 -0.8406 17 6 1.8006 -9.7486 -0.1205 18 7 2.7808 -10.8289 0.0729 19 6 2.8756 -11.8455 -0.8069 20 8 2.1430 -11.8818 -1.7728 21 6 3.8919 -12.9370 -0.5905 22 6 3.7918 -13.9592 -1.7246 23 6 4.7055 -15.1814 -1.5346 24 6 4.9915 -15.1036 -3.0436 25 6 4.6495 -13.6071 -2.9514 26 6 3.6587 -10.7634 1.2521 27 6 4.2941 -9.3693 1.3049 28 8 3.2655 -8.3798 1.2232 29 1 -0.4851 0.8400 0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6180 -4.9208 -0.8896 32 1 0.6160 -4.9205 0.8903 33 1 2.8337 -5.9124 -0.7791 34 1 0.8735 -7.3456 -0.8884 35 1 0.8727 -7.3451 0.8916 36 1 1.3513 -9.8334 -1.1100 37 1 1.0250 -9.8158 0.6423 38 1 3.6981 -13.4303 0.3619 39 1 4.8924 -12.5047 -0.5788 40 1 2.7621 -14.2180 -1.9714 41 1 4.1714 -16.0839 -1.2375 42 1 5.5788 -14.9814 -0.9138 43 1 6.0325 -15.2985 -3.3013 44 1 4.2898 -15.6752 -3.6510 45 1 5.5075 -12.9767 -2.7179 46 1 4.0701 -13.2386 -3.7980 47 1 3.0733 -10.9344 2.1556 48 1 4.4389 -11.5202 1.1714 49 1 4.8381 -9.2524 2.2421 50 1 4.9817 -9.2507 0.4675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754998130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -92.670869 kcal Electronic energy + Delta-G solvation = -29057.028808 eV Core-core repulsion = 24891.933607 eV Total energy + Delta-G solvation = -4165.095202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81530 -39.36570 -38.33235 -38.06313 -35.65030 -34.85550 -33.83382 -32.28601 -31.18879 -30.80458 -28.71699 -27.16869 -25.98433 -25.26052 -23.92075 -23.79649 -22.70362 -21.40320 -19.83001 -19.41463 -19.20360 -17.87211 -17.53476 -17.08384 -16.42595 -16.17241 -16.08521 -15.54064 -15.35146 -15.13954 -14.90903 -14.83870 -14.45218 -14.15829 -13.97478 -13.96884 -13.44287 -13.33223 -13.01535 -12.84225 -12.75919 -12.65169 -12.22626 -12.02385 -11.85963 -11.81877 -11.51692 -11.47384 -11.38375 -11.02144 -11.01323 -10.82117 -10.71231 -10.59105 -10.37134 -10.28180 -10.19121 -10.00852 -9.47992 -8.85316 -8.42276 -8.00594 -7.92315 -6.38827 -3.79521 2.29193 2.50376 3.19957 3.28327 3.34598 3.53414 3.94450 3.96308 4.05544 4.21415 4.25111 4.27366 4.42943 4.47623 4.53766 4.59421 4.74757 4.87346 4.89736 4.92651 4.99447 5.07776 5.12274 5.16951 5.27330 5.30865 5.31643 5.33601 5.37681 5.43275 5.50228 5.52659 5.53362 5.58121 5.70384 5.83377 5.84793 5.86812 6.01598 6.02197 6.12617 6.29794 6.98382 7.02408 7.23487 7.57984 7.68221 7.81894 8.09555 8.64754 9.21013 9.57721 10.09512 10.78991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.001623 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.243859 B =17252.563145 C =17342.094615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.660 5.660 14 C 0.068 3.932 15 C 0.084 3.916 16 H 0.062 0.938 17 C 0.083 3.917 18 N -0.617 5.617 19 C 0.516 3.484 20 O -0.537 6.537 21 C -0.130 4.130 22 C -0.096 4.096 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.135 4.135 26 C 0.071 3.929 27 C 0.045 3.955 28 O -0.351 6.351 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.348 0.652 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -30.360 0.050 30.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.292 5.292 14 C -0.062 4.062 15 C 0.025 3.975 16 H 0.080 0.920 17 C -0.040 4.040 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.413 6.413 21 C -0.170 4.170 22 C -0.115 4.115 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.173 4.173 26 C -0.052 4.052 27 C -0.033 4.033 28 O -0.269 6.269 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.125 0.875 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.031 -30.069 0.359 30.670 hybrid contribution -0.498 0.692 -0.940 1.269 sum 5.534 -29.377 -0.581 29.899 Atomic orbital electron populations 1.69612 1.05927 1.28106 1.50730 1.25253 0.95631 0.99691 0.97382 0.85855 0.79250 0.80827 0.78330 1.20467 1.20939 1.19418 1.19709 0.93381 0.82262 1.47511 0.87936 1.41860 1.09191 1.04584 1.64509 1.19798 0.88386 0.84709 0.84374 1.90524 1.13770 1.87056 1.55255 1.21677 0.94312 0.90954 1.01215 1.59954 1.18533 0.99379 1.51341 1.21904 0.94427 0.88397 1.01483 1.22379 0.93715 0.93330 0.88076 0.92008 1.22206 0.91549 0.86012 1.04265 1.48188 1.37652 1.24140 1.25250 1.20776 0.84500 0.82422 0.81779 1.90698 1.44458 1.76826 1.29337 1.21739 0.98867 0.95244 1.01164 1.22368 1.00115 0.94498 0.94480 1.22982 0.99589 0.97977 0.96975 1.22796 1.01590 0.97074 0.96566 1.22952 0.99408 0.96342 0.98578 1.22540 0.94572 0.99583 0.88554 1.22951 0.90435 0.86669 1.03222 1.88176 1.47831 1.53804 1.37057 0.91912 0.77461 0.93913 0.89482 0.83296 0.93721 0.89882 0.88099 0.90440 0.88723 0.88783 0.88228 0.91415 0.90062 0.91466 0.90192 0.90359 0.91192 0.90222 0.88883 0.87463 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.55 5.29 -10.97 -0.06 -14.61 16 10 C 0.44 10.67 7.82 -10.99 -0.09 10.58 16 11 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.66 -11.07 6.07 -115.06 -0.70 -11.77 16 14 C 0.07 0.86 5.35 -3.82 -0.02 0.84 16 15 C 0.08 0.97 2.94 -26.79 -0.08 0.89 16 16 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 17 C 0.08 0.84 5.90 -3.75 -0.02 0.82 16 18 N -0.62 -5.65 3.03 -172.52 -0.52 -6.17 16 19 C 0.52 5.12 7.71 -10.98 -0.08 5.04 16 20 O -0.54 -7.30 15.23 5.55 0.08 -7.21 16 21 C -0.13 -0.82 3.91 -27.88 -0.11 -0.93 16 22 C -0.10 -0.67 3.15 -89.81 -0.28 -0.96 16 23 C -0.14 -0.72 7.64 -25.92 -0.20 -0.92 16 24 C -0.14 -0.84 8.08 -25.91 -0.21 -1.04 16 25 C -0.14 -0.98 7.64 -25.92 -0.20 -1.18 16 26 C 0.07 0.46 6.54 -3.53 -0.02 0.44 16 27 C 0.05 0.39 6.99 37.31 0.26 0.65 16 28 O -0.35 -4.43 10.33 -35.23 -0.36 -4.79 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.35 6.02 8.43 -39.29 -0.33 5.69 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.11 7.08 -51.93 -0.37 0.74 16 37 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 38 H 0.09 0.43 8.01 -51.93 -0.42 0.01 16 39 H 0.09 0.46 7.36 -51.93 -0.38 0.08 16 40 H 0.10 0.87 7.67 -51.93 -0.40 0.47 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.36 6.05 -51.93 -0.31 0.04 16 49 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -34.76 404.50 -9.37 -44.13 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.37 Total: 11.24 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.32 Total: 6.99 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.55 Total: -56.61 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.19 Total: -28.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.76 -9.37 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754998130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.541 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds