Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46965 * 269.99735 * 3 2 1 5 5 H 1.48499 * 109.47443 * 29.99941 * 3 2 1 6 6 H 1.48505 * 109.47146 * 149.99987 * 3 2 1 7 7 C 1.38946 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00479 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99923 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00310 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47210 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00046 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46836 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.51447 * 304.89932 * 15 14 13 17 17 C 1.52882 * 109.57823 * 184.88093 * 15 14 13 18 18 N 1.47149 * 108.60546 * 187.92655 * 17 15 14 19 19 C 1.34780 * 120.97953 * 230.49849 * 18 17 15 20 20 O 1.21284 * 120.00128 * 359.72100 * 19 18 17 21 21 C 1.50706 * 119.99897 * 179.71613 * 19 18 17 22 22 C 1.53003 * 109.46816 * 180.02562 * 21 19 18 23 23 C 1.53779 * 113.61005 * 185.00289 * 22 21 19 24 24 C 1.53787 * 87.07963 * 219.93029 * 23 22 21 25 25 C 1.53779 * 113.69268 * 87.46527 * 22 21 19 26 26 C 1.47154 * 118.04054 * 50.22851 * 18 17 15 27 27 C 1.53300 * 108.38004 * 309.71673 * 26 18 17 28 28 O 1.42956 * 109.51298 * 65.00556 * 15 14 13 29 29 H 0.97005 * 120.00477 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99603 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47169 * 59.99388 * 12 10 9 32 32 H 1.09001 * 109.46885 * 299.99789 * 12 10 9 33 33 H 1.00899 * 110.99868 * 303.95244 * 13 12 10 34 34 H 1.08997 * 109.46923 * 60.00284 * 14 13 12 35 35 H 1.09004 * 109.47202 * 299.99962 * 14 13 12 36 36 H 1.09002 * 109.61865 * 68.10486 * 17 15 14 37 37 H 1.09000 * 109.52456 * 307.68777 * 17 15 14 38 38 H 1.08996 * 109.47119 * 60.00471 * 21 19 18 39 39 H 1.08996 * 109.46848 * 300.00120 * 21 19 18 40 40 H 1.09006 * 112.85187 * 316.19488 * 22 21 19 41 41 H 1.08997 * 113.61646 * 105.38661 * 23 22 21 42 42 H 1.09000 * 113.61527 * 334.47932 * 23 22 21 43 43 H 1.09004 * 113.61202 * 139.98084 * 24 23 22 44 44 H 1.08994 * 113.61447 * 270.88515 * 24 23 22 45 45 H 1.09002 * 113.61557 * 25.44212 * 25 22 21 46 46 H 1.09004 * 113.61501 * 254.53633 * 25 22 21 47 47 H 1.09000 * 109.68189 * 69.43799 * 26 18 17 48 48 H 1.08997 * 109.68041 * 189.95878 * 26 18 17 49 49 H 1.08998 * 109.50874 * 172.22131 * 27 26 18 50 50 H 1.08997 * 109.50928 * 292.32492 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.4980 -7.2709 0.0018 15 6 2.5229 -8.4068 0.0019 16 1 3.2033 -8.2834 -0.8406 17 6 1.8006 -9.7486 -0.1205 18 7 2.7808 -10.8289 0.0729 19 6 2.8756 -11.8455 -0.8069 20 8 2.1430 -11.8818 -1.7728 21 6 3.8919 -12.9370 -0.5905 22 6 3.7918 -13.9592 -1.7246 23 6 4.7055 -15.1814 -1.5346 24 6 4.9915 -15.1036 -3.0436 25 6 4.6495 -13.6071 -2.9514 26 6 3.6587 -10.7634 1.2521 27 6 4.2941 -9.3693 1.3049 28 8 3.2655 -8.3798 1.2232 29 1 -0.4851 0.8400 0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6180 -4.9208 -0.8896 32 1 0.6160 -4.9205 0.8903 33 1 2.8337 -5.9124 -0.7791 34 1 0.8735 -7.3456 -0.8884 35 1 0.8727 -7.3451 0.8916 36 1 1.3513 -9.8334 -1.1100 37 1 1.0250 -9.8158 0.6423 38 1 3.6981 -13.4303 0.3619 39 1 4.8924 -12.5047 -0.5788 40 1 2.7621 -14.2180 -1.9714 41 1 4.1714 -16.0839 -1.2375 42 1 5.5788 -14.9814 -0.9138 43 1 6.0325 -15.2985 -3.3013 44 1 4.2898 -15.6752 -3.6510 45 1 5.5075 -12.9767 -2.7179 46 1 4.0701 -13.2386 -3.7980 47 1 3.0733 -10.9344 2.1556 48 1 4.4389 -11.5202 1.1714 49 1 4.8381 -9.2524 2.2421 50 1 4.9817 -9.2507 0.4675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754998130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -118.553481 kcal Electronic energy + Delta-G solvation = -29058.151163 eV Core-core repulsion = 24891.933607 eV Total energy + Delta-G solvation = -4166.217556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54523 -40.23079 -39.92128 -38.89200 -36.88614 -35.90724 -35.66068 -33.36414 -33.07730 -31.44574 -29.66318 -28.38413 -26.74949 -26.44900 -25.18803 -24.46067 -23.63577 -22.29398 -21.07051 -20.34469 -20.08193 -19.90935 -18.30478 -18.03642 -17.66295 -17.15118 -16.94467 -16.69061 -16.37696 -16.18671 -16.09972 -15.90175 -15.67483 -15.35375 -15.09618 -14.83038 -14.69493 -14.50202 -14.29598 -13.68846 -13.54284 -13.35970 -13.28970 -13.22184 -13.09405 -12.89066 -12.75937 -12.60508 -12.41854 -12.33440 -12.20219 -12.11838 -11.67089 -11.50950 -11.47840 -11.25389 -11.11786 -11.07404 -10.75076 -10.35844 -10.01731 -9.61435 -9.31793 -8.46612 -5.95597 1.38222 1.41860 1.54893 1.56634 1.82088 2.05054 2.29382 2.75030 2.87514 3.20516 3.40119 3.47754 3.72966 3.76045 3.81376 3.87722 3.88484 4.00631 4.03319 4.07317 4.22834 4.30347 4.34277 4.40112 4.45422 4.49303 4.55421 4.56192 4.60572 4.65903 4.68769 4.80285 4.85402 4.87708 4.91824 4.98061 5.01173 5.09965 5.16633 5.30416 5.39349 5.40773 5.63434 5.85285 6.07315 6.22073 6.30455 6.38853 6.60151 7.09449 7.12444 7.55902 8.11480 8.70766 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.001623 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.243859 B =17252.563145 C =17342.094615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.677 5.677 14 C 0.070 3.930 15 C 0.092 3.908 16 H 0.049 0.951 17 C 0.088 3.912 18 N -0.619 5.619 19 C 0.510 3.490 20 O -0.583 6.583 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.144 4.144 26 C 0.074 3.926 27 C 0.037 3.963 28 O -0.380 6.380 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.341 0.659 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -31.642 1.250 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.309 5.309 14 C -0.059 4.059 15 C 0.033 3.967 16 H 0.067 0.933 17 C -0.036 4.036 18 N -0.352 5.352 19 C 0.300 3.700 20 O -0.463 6.463 21 C -0.162 4.162 22 C -0.120 4.120 23 C -0.161 4.161 24 C -0.180 4.180 25 C -0.181 4.181 26 C -0.048 4.048 27 C -0.040 4.040 28 O -0.298 6.298 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.567 -31.374 1.583 32.093 hybrid contribution -0.658 1.061 -1.314 1.813 sum 5.909 -30.313 0.269 30.884 Atomic orbital electron populations 1.69671 1.06827 1.29317 1.50245 1.26044 0.96559 1.02408 0.96200 0.84914 0.77864 0.76809 0.78645 1.19606 1.19450 1.19835 1.19681 0.92727 0.84083 1.50074 0.90371 1.41924 1.09337 1.04678 1.65051 1.20872 0.88253 0.86193 0.82198 1.90489 1.15927 1.87966 1.56641 1.21538 0.93923 0.87984 1.03209 1.59949 1.18938 1.00626 1.51367 1.21988 0.94733 0.86633 1.02595 1.22229 0.93309 0.93598 0.87562 0.93267 1.22038 0.91899 0.85799 1.03842 1.48325 1.37555 1.23489 1.25873 1.21492 0.84517 0.82987 0.80964 1.90680 1.46420 1.77924 1.31273 1.21806 0.98592 0.93860 1.01982 1.22327 0.99106 0.95828 0.94742 1.22948 0.99595 0.97106 0.96491 1.22807 1.02038 0.95774 0.97412 1.23014 0.99526 0.97485 0.98076 1.22706 0.95080 0.99188 0.87786 1.23205 0.89763 0.87008 1.04023 1.88123 1.48880 1.55621 1.37225 0.91276 0.76926 0.91360 0.87679 0.84061 0.91907 0.89225 0.89362 0.89601 0.86004 0.86579 0.90674 0.90823 0.88173 0.90497 0.90663 0.89558 0.93706 0.89136 0.85455 0.85703 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.00 5.29 -306.99 -1.62 -31.62 16 10 C 0.44 21.41 7.82 87.66 0.69 22.09 16 11 O -0.62 -35.65 15.78 -3.07 -0.05 -35.70 16 12 C 0.07 2.32 6.17 85.56 0.53 2.84 16 13 N -0.68 -22.45 6.07 -517.93 -3.15 -25.60 16 14 C 0.07 1.69 5.35 86.30 0.46 2.15 16 15 C 0.09 2.09 2.94 30.56 0.09 2.18 16 16 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 17 C 0.09 1.73 5.90 86.22 0.51 2.24 16 18 N -0.62 -10.39 3.03 -818.12 -2.48 -12.87 16 19 C 0.51 9.60 7.71 87.66 0.68 10.28 16 20 O -0.58 -16.24 15.23 -3.04 -0.05 -16.28 16 21 C -0.12 -1.24 3.91 29.85 0.12 -1.13 16 22 C -0.10 -1.31 3.15 -10.27 -0.03 -1.35 16 23 C -0.12 -1.01 7.64 31.12 0.24 -0.77 16 24 C -0.14 -1.51 8.08 31.12 0.25 -1.26 16 25 C -0.14 -2.03 7.64 31.12 0.24 -1.79 16 26 C 0.07 0.76 6.54 86.36 0.57 1.33 16 27 C 0.04 0.57 6.99 72.08 0.50 1.07 16 28 O -0.38 -9.24 10.33 -148.98 -1.54 -10.78 16 29 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.40 19.64 7.90 -92.70 -0.73 18.91 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.34 11.97 8.43 -89.69 -0.76 11.21 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 1.97 7.08 -2.39 -0.02 1.95 16 37 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.12 0.60 8.01 -2.39 -0.02 0.58 16 39 H 0.12 0.70 7.36 -2.39 -0.02 0.68 16 40 H 0.07 1.35 7.67 -2.38 -0.02 1.33 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.05 7.90 -2.39 -0.02 1.03 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.13 0.43 6.05 -2.39 -0.01 0.42 16 49 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -77.70 404.50 -0.99 -78.70 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -0.54 Total: 39.47 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.11 Total: 19.05 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -6.96 Total: -119.90 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -1.63 Total: -62.76 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.70 -0.99 -78.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754998130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.858 kcal (2) G-P(sol) polarization free energy of solvation -77.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds