Wall clock time and date at job start Sat Apr 11 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48503 * 109.47268 * 269.99698 * 3 2 1 5 5 H 1.48500 * 109.47502 * 29.99718 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00102 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47138 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.50659 * 59.89651 * 15 14 13 17 17 C 1.53297 * 109.51400 * 180.02562 * 15 14 13 18 18 N 1.47150 * 108.38243 * 172.22593 * 17 15 14 19 19 C 1.34775 * 120.97843 * 129.48517 * 18 17 15 20 20 O 1.21279 * 120.00431 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99779 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47111 * 179.97438 * 21 19 18 23 23 C 1.53770 * 113.61704 * 274.13792 * 22 21 19 24 24 C 1.53959 * 87.02052 * 220.04848 * 23 22 21 25 25 C 1.53780 * 113.61301 * 176.52557 * 22 21 19 26 26 C 1.47154 * 118.03780 * 309.46559 * 18 17 15 27 27 C 1.53291 * 108.38266 * 50.53374 * 26 18 17 28 28 O 1.42957 * 109.22684 * 307.70060 * 27 26 18 29 29 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 33 33 H 1.00904 * 110.99860 * 56.04901 * 13 12 10 34 34 H 1.08997 * 109.47334 * 299.99788 * 14 13 12 35 35 H 1.08995 * 109.47296 * 60.00089 * 14 13 12 36 36 H 1.09000 * 109.67611 * 291.94820 * 17 15 14 37 37 H 1.08995 * 109.68112 * 52.46324 * 17 15 14 38 38 H 1.09003 * 109.46995 * 299.99853 * 21 19 18 39 39 H 1.08999 * 109.47167 * 60.00132 * 21 19 18 40 40 H 1.08999 * 112.84941 * 45.33718 * 22 21 19 41 41 H 1.08999 * 113.61676 * 334.56746 * 23 22 21 42 42 H 1.08996 * 113.61904 * 105.47264 * 23 22 21 43 43 H 1.09004 * 113.53789 * 270.80777 * 24 23 22 44 44 H 1.08999 * 113.66971 * 139.93042 * 24 23 22 45 45 H 1.09002 * 113.62115 * 254.53260 * 25 22 21 46 46 H 1.08999 * 113.61405 * 25.43762 * 25 22 21 47 47 H 1.08995 * 109.68022 * 170.25892 * 26 18 17 48 48 H 1.09002 * 109.67669 * 290.81390 * 26 18 17 49 49 H 1.08996 * 109.51283 * 67.62737 * 27 26 18 50 50 H 1.08997 * 109.50907 * 187.77594 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.4981 -7.2708 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.1494 -8.3311 0.8938 17 6 1.7932 -9.7549 0.0056 18 7 2.7891 -10.8218 -0.1822 19 6 2.8304 -11.8855 0.6444 20 8 2.0391 -11.9739 1.5592 21 6 3.8594 -12.9658 0.4313 22 6 3.6906 -14.0487 1.4989 23 6 4.4397 -13.7460 2.8073 24 6 4.8067 -15.2406 2.8488 25 6 4.6416 -15.2438 1.3199 26 6 3.7382 -10.6933 -1.2994 27 6 4.3731 -9.2995 -1.2364 28 8 3.3398 -8.3143 -1.1646 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6168 -4.9208 -0.8876 32 1 0.6175 -4.9204 0.8924 33 1 2.8333 -5.9121 0.7841 34 1 0.8736 -7.3446 0.8941 35 1 0.8730 -7.3459 -0.8858 36 1 1.2808 -9.8944 0.9575 37 1 1.0689 -9.7806 -0.8085 38 1 3.7253 -13.4054 -0.5571 39 1 4.8583 -12.5359 0.5053 40 1 2.6501 -14.3373 1.6482 41 1 5.2993 -13.0888 2.6762 42 1 3.7867 -13.4331 3.6220 43 1 4.0716 -15.8551 3.3687 44 1 5.8281 -15.4314 3.1781 45 1 4.1514 -16.1383 0.9355 46 1 5.5566 -14.9968 0.7814 47 1 4.5135 -11.4543 -1.2118 48 1 3.2100 -10.8137 -2.2453 49 1 5.0067 -9.2277 -0.3524 50 1 4.9740 -9.1325 -2.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754998131.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:21 Heat of formation + Delta-G solvation = -92.443152 kcal Electronic energy + Delta-G solvation = -29064.549528 eV Core-core repulsion = 24899.464201 eV Total energy + Delta-G solvation = -4165.085327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80733 -39.35211 -38.32611 -38.05425 -35.64364 -34.84353 -33.83051 -32.26775 -31.18600 -30.79764 -28.70960 -27.16242 -25.98522 -25.25676 -23.91834 -23.78342 -22.70646 -21.39219 -19.82960 -19.41048 -19.20074 -17.86956 -17.53372 -17.06498 -16.43236 -16.17469 -16.07163 -15.53996 -15.35770 -15.12527 -14.90234 -14.82992 -14.44998 -14.15708 -13.97103 -13.95867 -13.43933 -13.33220 -13.00702 -12.84127 -12.75733 -12.63870 -12.22924 -12.03371 -11.85240 -11.82460 -11.50542 -11.47210 -11.37661 -11.01705 -11.01129 -10.81458 -10.71305 -10.59350 -10.37219 -10.26824 -10.18967 -10.00468 -9.47780 -8.84680 -8.41750 -7.99958 -7.91975 -6.38701 -3.79355 2.29482 2.50694 3.20184 3.28440 3.34427 3.54407 3.94688 3.96317 4.05926 4.21788 4.25130 4.27492 4.42890 4.48037 4.54369 4.59595 4.74913 4.87487 4.89734 4.92426 4.99144 5.07767 5.12248 5.17035 5.27347 5.31019 5.31974 5.34034 5.37805 5.44019 5.50051 5.52602 5.53865 5.58959 5.70799 5.83222 5.84977 5.86875 6.01864 6.02425 6.12448 6.30025 6.98721 7.02880 7.24578 7.58118 7.68974 7.82114 8.09714 8.64977 9.21173 9.57927 10.09750 10.79131 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029302 B = 0.001615 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.326263 B =17331.082869 C =17380.714691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.658 5.658 14 C 0.068 3.932 15 C 0.084 3.916 16 H 0.061 0.939 17 C 0.083 3.917 18 N -0.618 5.618 19 C 0.516 3.484 20 O -0.537 6.537 21 C -0.131 4.131 22 C -0.095 4.095 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.138 4.138 26 C 0.071 3.929 27 C 0.045 3.955 28 O -0.349 6.349 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.348 0.652 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -30.289 -0.153 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.290 5.290 14 C -0.062 4.062 15 C 0.025 3.975 16 H 0.079 0.921 17 C -0.040 4.040 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.413 6.413 21 C -0.170 4.170 22 C -0.114 4.114 23 C -0.173 4.173 24 C -0.180 4.180 25 C -0.175 4.175 26 C -0.052 4.052 27 C -0.033 4.033 28 O -0.266 6.266 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.098 0.902 49 H 0.072 0.928 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.083 -30.018 -0.473 30.631 hybrid contribution -0.508 0.685 0.916 1.252 sum 5.575 -29.332 0.444 29.861 Atomic orbital electron populations 1.69617 1.05923 1.28096 1.50752 1.25256 0.95634 0.99690 0.97392 0.85853 0.79193 0.80819 0.78382 1.20404 1.20973 1.19464 1.19709 0.93380 0.82266 1.47496 0.87937 1.41858 1.09187 1.04585 1.64535 1.19798 0.88386 0.84706 0.84361 1.90524 1.13768 1.87050 1.55225 1.21685 0.94317 0.90985 1.01199 1.59961 1.18481 0.99311 1.51294 1.21914 0.94400 0.88484 1.01438 1.22468 0.92639 0.93276 0.89154 0.92055 1.22287 0.91286 0.86205 1.04231 1.48191 1.34451 1.22104 1.30497 1.20770 0.85232 0.82324 0.81152 1.90696 1.41761 1.77558 1.31315 1.21741 0.98710 0.95069 1.01510 1.22355 1.00204 0.94286 0.94566 1.22972 0.99902 0.96355 0.98025 1.22827 1.01675 0.97132 0.96395 1.22977 0.99568 0.98133 0.96839 1.22540 0.93157 0.99491 0.90059 1.22953 0.90448 0.86830 1.03069 1.88196 1.44599 1.52196 1.41655 0.91919 0.77464 0.89494 0.93939 0.83300 0.93755 0.89974 0.88116 0.90408 0.88731 0.88797 0.88287 0.90384 0.91169 0.90207 0.91465 0.91409 0.90063 0.88896 0.90218 0.92774 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.44 10.67 7.82 -10.99 -0.09 10.59 16 11 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 12 C 0.05 0.92 6.17 -4.97 -0.03 0.88 16 13 N -0.66 -11.04 6.00 -115.05 -0.69 -11.73 16 14 C 0.07 0.85 5.38 -3.82 -0.02 0.83 16 15 C 0.08 0.97 2.98 -26.57 -0.08 0.89 16 16 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 17 C 0.08 0.84 5.93 -3.53 -0.02 0.82 16 18 N -0.62 -5.65 3.02 -172.28 -0.52 -6.17 16 19 C 0.52 5.11 7.71 -10.98 -0.08 5.03 16 20 O -0.54 -7.28 15.26 5.56 0.08 -7.19 16 21 C -0.13 -0.82 3.90 -27.88 -0.11 -0.93 16 22 C -0.10 -0.67 3.11 -89.81 -0.28 -0.95 16 23 C -0.14 -0.98 7.65 -25.83 -0.20 -1.18 16 24 C -0.14 -0.83 8.09 -25.82 -0.21 -1.04 16 25 C -0.14 -0.72 7.65 -25.92 -0.20 -0.92 16 26 C 0.07 0.47 6.54 -3.53 -0.02 0.44 16 27 C 0.05 0.39 6.98 37.31 0.26 0.65 16 28 O -0.35 -4.43 10.25 -35.23 -0.36 -4.79 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.35 6.03 8.43 -39.29 -0.33 5.70 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.10 7.08 -51.93 -0.37 0.73 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.43 8.02 -51.93 -0.42 0.01 16 39 H 0.09 0.46 7.39 -51.93 -0.38 0.07 16 40 H 0.10 0.86 7.73 -51.93 -0.40 0.46 16 41 H 0.08 0.53 7.92 -51.93 -0.41 0.11 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 47 H 0.09 0.36 6.05 -51.93 -0.31 0.05 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -34.74 404.52 -9.35 -44.09 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.38 Total: 11.22 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.32 Total: 6.99 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.54 Total: -56.59 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.19 Total: -28.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.74 -9.35 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754998131.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.349 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds