Wall clock time and date at job start Sat Apr 11 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99784 * 2 1 4 4 H 1.48503 * 109.47268 * 269.99698 * 3 2 1 5 5 H 1.48500 * 109.47502 * 29.99718 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00102 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47138 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.50659 * 59.89651 * 15 14 13 17 17 C 1.53297 * 109.51400 * 180.02562 * 15 14 13 18 18 N 1.47150 * 108.38243 * 172.22593 * 17 15 14 19 19 C 1.34775 * 120.97843 * 129.48517 * 18 17 15 20 20 O 1.21279 * 120.00431 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99779 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47111 * 179.97438 * 21 19 18 23 23 C 1.53770 * 113.61704 * 274.13792 * 22 21 19 24 24 C 1.53959 * 87.02052 * 220.04848 * 23 22 21 25 25 C 1.53780 * 113.61301 * 176.52557 * 22 21 19 26 26 C 1.47154 * 118.03780 * 309.46559 * 18 17 15 27 27 C 1.53291 * 108.38266 * 50.53374 * 26 18 17 28 28 O 1.42957 * 109.22684 * 307.70060 * 27 26 18 29 29 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 33 33 H 1.00904 * 110.99860 * 56.04901 * 13 12 10 34 34 H 1.08997 * 109.47334 * 299.99788 * 14 13 12 35 35 H 1.08995 * 109.47296 * 60.00089 * 14 13 12 36 36 H 1.09000 * 109.67611 * 291.94820 * 17 15 14 37 37 H 1.08995 * 109.68112 * 52.46324 * 17 15 14 38 38 H 1.09003 * 109.46995 * 299.99853 * 21 19 18 39 39 H 1.08999 * 109.47167 * 60.00132 * 21 19 18 40 40 H 1.08999 * 112.84941 * 45.33718 * 22 21 19 41 41 H 1.08999 * 113.61676 * 334.56746 * 23 22 21 42 42 H 1.08996 * 113.61904 * 105.47264 * 23 22 21 43 43 H 1.09004 * 113.53789 * 270.80777 * 24 23 22 44 44 H 1.08999 * 113.66971 * 139.93042 * 24 23 22 45 45 H 1.09002 * 113.62115 * 254.53260 * 25 22 21 46 46 H 1.08999 * 113.61405 * 25.43762 * 25 22 21 47 47 H 1.08995 * 109.68022 * 170.25892 * 26 18 17 48 48 H 1.09002 * 109.67669 * 290.81390 * 26 18 17 49 49 H 1.08996 * 109.51283 * 67.62737 * 27 26 18 50 50 H 1.08997 * 109.50907 * 187.77594 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.4981 -7.2708 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.1494 -8.3311 0.8938 17 6 1.7932 -9.7549 0.0056 18 7 2.7891 -10.8218 -0.1822 19 6 2.8304 -11.8855 0.6444 20 8 2.0391 -11.9739 1.5592 21 6 3.8594 -12.9658 0.4313 22 6 3.6906 -14.0487 1.4989 23 6 4.4397 -13.7460 2.8073 24 6 4.8067 -15.2406 2.8488 25 6 4.6416 -15.2438 1.3199 26 6 3.7382 -10.6933 -1.2994 27 6 4.3731 -9.2995 -1.2364 28 8 3.3398 -8.3143 -1.1646 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6168 -4.9208 -0.8876 32 1 0.6175 -4.9204 0.8924 33 1 2.8333 -5.9121 0.7841 34 1 0.8736 -7.3446 0.8941 35 1 0.8730 -7.3459 -0.8858 36 1 1.2808 -9.8944 0.9575 37 1 1.0689 -9.7806 -0.8085 38 1 3.7253 -13.4054 -0.5571 39 1 4.8583 -12.5359 0.5053 40 1 2.6501 -14.3373 1.6482 41 1 5.2993 -13.0888 2.6762 42 1 3.7867 -13.4331 3.6220 43 1 4.0716 -15.8551 3.3687 44 1 5.8281 -15.4314 3.1781 45 1 4.1514 -16.1383 0.9355 46 1 5.5566 -14.9968 0.7814 47 1 4.5135 -11.4543 -1.2118 48 1 3.2100 -10.8137 -2.2453 49 1 5.0067 -9.2277 -0.3524 50 1 4.9740 -9.1325 -2.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754998131.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:21 Heat of formation + Delta-G solvation = -118.235805 kcal Electronic energy + Delta-G solvation = -29065.667981 eV Core-core repulsion = 24899.464201 eV Total energy + Delta-G solvation = -4166.203780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53642 -40.22555 -39.91058 -38.87955 -36.87716 -35.90466 -35.65097 -33.35508 -33.06297 -31.43972 -29.65748 -28.37786 -26.74539 -26.45016 -25.18082 -24.45417 -23.63408 -22.28405 -21.06786 -20.34490 -20.07631 -19.90732 -18.30211 -18.02949 -17.64260 -17.16004 -16.94758 -16.68365 -16.37199 -16.17804 -16.09166 -15.90435 -15.66996 -15.35219 -15.08738 -14.82969 -14.69714 -14.49522 -14.28488 -13.68138 -13.53853 -13.36467 -13.29084 -13.21137 -13.09265 -12.88898 -12.75433 -12.59934 -12.41602 -12.33930 -12.19714 -12.11775 -11.66295 -11.50744 -11.47383 -11.25576 -11.10719 -11.07282 -10.74594 -10.35414 -10.01479 -9.60874 -9.30796 -8.46470 -5.95406 1.38433 1.41956 1.54864 1.57021 1.82279 2.05325 2.29551 2.75843 2.88129 3.20693 3.40083 3.48205 3.73341 3.75889 3.81270 3.87650 3.88753 4.00482 4.03320 4.07725 4.22753 4.30783 4.34546 4.39871 4.45482 4.49633 4.55701 4.56811 4.60995 4.66443 4.68759 4.80485 4.85680 4.87734 4.91935 4.98080 5.01103 5.10098 5.16797 5.30645 5.39428 5.40918 5.63375 5.85581 6.07457 6.23078 6.30804 6.39943 6.60398 7.09731 7.12636 7.56156 8.11751 8.70921 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029302 B = 0.001615 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.326263 B =17331.082869 C =17380.714691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.675 5.675 14 C 0.069 3.931 15 C 0.092 3.908 16 H 0.050 0.950 17 C 0.088 3.912 18 N -0.619 5.619 19 C 0.510 3.490 20 O -0.583 6.583 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.124 4.124 26 C 0.074 3.926 27 C 0.037 3.963 28 O -0.379 6.379 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.341 0.659 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.127 0.873 48 H 0.090 0.910 49 H 0.051 0.949 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -31.504 -1.321 32.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.307 5.307 14 C -0.060 4.060 15 C 0.032 3.968 16 H 0.068 0.932 17 C -0.036 4.036 18 N -0.353 5.353 19 C 0.301 3.699 20 O -0.463 6.463 21 C -0.163 4.163 22 C -0.119 4.119 23 C -0.181 4.181 24 C -0.180 4.180 25 C -0.161 4.161 26 C -0.047 4.047 27 C -0.040 4.040 28 O -0.297 6.297 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.145 0.855 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.705 -31.255 -1.667 32.009 hybrid contribution -0.697 1.033 1.283 1.788 sum 6.008 -30.222 -0.384 30.816 Atomic orbital electron populations 1.69676 1.06826 1.29305 1.50274 1.26047 0.96560 1.02409 0.96211 0.84912 0.77846 0.76803 0.78664 1.19613 1.19470 1.19817 1.19682 0.92727 0.84086 1.50051 0.90365 1.41923 1.09332 1.04682 1.65081 1.20872 0.88254 0.86187 0.82184 1.90489 1.15920 1.87959 1.56608 1.21545 0.93931 0.88023 1.03184 1.59954 1.18878 1.00554 1.51310 1.22001 0.94720 0.86715 1.02558 1.22326 0.92300 0.93515 0.88610 0.93166 1.22121 0.91569 0.85954 1.03907 1.48325 1.34452 1.21502 1.30975 1.21481 0.85284 0.82880 0.80300 1.90678 1.43735 1.78591 1.33252 1.21806 0.98351 0.93611 1.02498 1.22316 0.99304 0.95565 0.94751 1.23031 0.99839 0.97582 0.97631 1.22839 1.02059 0.95818 0.97304 1.22943 0.99630 0.97318 0.96247 1.22700 0.93479 0.99121 0.89446 1.23203 0.89831 0.87206 1.03768 1.88141 1.45638 1.54062 1.41869 0.91286 0.76934 0.87697 0.91398 0.84080 0.91963 0.89287 0.89319 0.89647 0.86048 0.86590 0.90668 0.89640 0.93690 0.90653 0.90511 0.90791 0.88204 0.85464 0.89209 0.93082 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.00 5.29 -306.99 -1.62 -31.63 16 10 C 0.44 21.41 7.82 87.66 0.69 22.09 16 11 O -0.62 -35.60 15.78 -3.06 -0.05 -35.65 16 12 C 0.07 2.31 6.17 85.56 0.53 2.83 16 13 N -0.67 -22.38 6.00 -517.92 -3.11 -25.48 16 14 C 0.07 1.67 5.38 86.31 0.46 2.14 16 15 C 0.09 2.07 2.98 30.70 0.09 2.16 16 16 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 17 C 0.09 1.73 5.93 86.35 0.51 2.24 16 18 N -0.62 -10.40 3.02 -817.36 -2.47 -12.87 16 19 C 0.51 9.57 7.71 87.66 0.68 10.25 16 20 O -0.58 -16.14 15.26 -3.03 -0.05 -16.18 16 21 C -0.12 -1.24 3.90 29.85 0.12 -1.13 16 22 C -0.10 -1.30 3.11 -10.27 -0.03 -1.33 16 23 C -0.14 -2.03 7.65 31.18 0.24 -1.79 16 24 C -0.14 -1.50 8.09 31.18 0.25 -1.25 16 25 C -0.12 -1.00 7.65 31.12 0.24 -0.76 16 26 C 0.07 0.78 6.54 86.35 0.56 1.34 16 27 C 0.04 0.57 6.98 72.08 0.50 1.08 16 28 O -0.38 -9.28 10.25 -148.98 -1.53 -10.81 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 31 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.34 11.97 8.43 -89.69 -0.76 11.21 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.96 7.08 -2.39 -0.02 1.95 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.12 0.61 8.02 -2.39 -0.02 0.59 16 39 H 0.12 0.70 7.39 -2.39 -0.02 0.68 16 40 H 0.07 1.34 7.73 -2.39 -0.02 1.32 16 41 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 47 H 0.13 0.45 6.05 -2.39 -0.01 0.43 16 48 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -77.56 404.52 -0.93 -78.49 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.54 Total: 39.49 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.12 Total: 19.04 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -6.92 Total: -119.81 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -1.62 Total: -62.65 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.56 -0.93 -78.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754998131.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.747 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds