Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47079 * 240.00285 * 3 2 1 5 5 H 1.48500 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47133 * 120.00381 * 3 2 1 7 7 C 1.38816 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00575 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99576 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46784 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.51703 * 305.10263 * 11 10 9 13 13 C 1.53292 * 109.51114 * 185.00121 * 11 10 9 14 14 N 1.47150 * 108.38874 * 187.72813 * 13 11 10 15 15 C 1.34775 * 120.98740 * 230.51748 * 14 13 11 16 16 O 1.21289 * 119.99425 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00691 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.47218 * 179.97438 * 17 15 14 19 19 C 1.47195 * 119.78628 * 90.00220 * 18 17 15 20 20 C 1.52986 * 108.66452 * 108.01601 * 19 18 17 21 21 C 1.51784 * 110.88114 * 86.46512 * 20 19 18 22 22 C 1.51820 * 113.82760 * 293.02133 * 21 20 19 23 23 C 1.53061 * 110.74553 * 66.77225 * 22 21 20 24 24 C 1.33367 * 119.78484 * 269.97123 * 18 17 15 25 25 O 1.21280 * 119.89365 * 0.31639 * 24 18 17 26 26 C 1.47159 * 118.03601 * 50.77883 * 14 13 11 27 27 C 1.53714 * 108.16333 * 309.16775 * 26 14 13 28 28 O 1.42965 * 109.14580 * 52.53579 * 27 26 14 29 29 H 0.97009 * 119.99672 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99927 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47105 * 60.00286 * 10 9 7 32 32 H 1.08996 * 109.47632 * 299.99547 * 10 9 7 33 33 H 1.08998 * 109.68473 * 68.00557 * 13 11 10 34 34 H 1.09003 * 109.71597 * 307.46421 * 13 11 10 35 35 H 1.09001 * 109.46642 * 59.99221 * 17 15 14 36 36 H 1.09000 * 109.46885 * 300.00191 * 17 15 14 37 37 H 1.08999 * 109.60379 * 348.26522 * 19 18 17 38 38 H 1.08997 * 109.60299 * 227.77185 * 19 18 17 39 39 H 1.08998 * 109.20117 * 206.83140 * 20 19 18 40 40 H 1.09002 * 109.19611 * 326.10888 * 20 19 18 41 41 H 1.08997 * 108.61124 * 54.11632 * 21 20 19 42 42 H 1.09001 * 108.61303 * 171.87444 * 21 20 19 43 43 H 1.08993 * 109.20049 * 306.45577 * 22 21 20 44 44 H 1.09002 * 109.23635 * 187.10540 * 22 21 20 45 45 H 1.08993 * 109.63000 * 155.40779 * 23 22 21 46 46 H 1.08994 * 109.63680 * 34.80684 * 23 22 21 47 47 H 1.09002 * 109.67391 * 68.94393 * 26 14 13 48 48 H 1.08999 * 109.68162 * 189.49191 * 26 14 13 49 49 H 1.08991 * 109.65569 * 292.57037 * 27 26 14 50 50 H 1.09002 * 109.48311 * 172.38911 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0635 -4.8197 0.0012 12 1 0.3781 -4.7123 0.8419 13 6 1.8247 -6.1442 0.1271 14 7 0.8701 -7.2481 -0.0614 15 6 0.8009 -8.2641 0.8214 16 8 1.5326 -8.2778 1.7887 17 6 -0.1855 -9.3830 0.6069 18 7 -0.0646 -10.3560 1.6954 19 6 -0.8798 -10.1986 2.9108 20 6 -1.9634 -11.2786 2.9168 21 6 -1.4449 -12.5617 3.5401 22 6 -0.3607 -13.2447 2.7258 23 6 0.9113 -12.3940 2.6949 24 6 0.7831 -11.3790 1.5785 25 8 1.4539 -11.4964 0.5749 26 6 -0.0028 -7.2129 -1.2457 27 6 -0.6787 -5.8336 -1.3019 28 8 0.3231 -4.8168 -1.2219 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6844 -3.7146 0.8905 32 1 2.6844 -3.7147 -0.8894 33 1 2.2770 -6.2151 1.1163 34 1 2.6012 -6.1961 -0.6361 35 1 0.0230 -9.8738 -0.3437 36 1 -1.1972 -8.9776 0.5922 37 1 -1.3457 -9.2132 2.9136 38 1 -0.2479 -10.3096 3.7920 39 1 -2.8206 -10.9232 3.4886 40 1 -2.2755 -11.4788 1.8918 41 1 -1.0449 -12.3319 4.5277 42 1 -2.2793 -13.2530 3.6583 43 1 -0.7179 -13.3935 1.7069 44 1 -0.1338 -14.2135 3.1709 45 1 1.7749 -13.0331 2.5113 46 1 1.0299 -11.8777 3.6474 47 1 0.5925 -7.3701 -2.1451 48 1 -0.7611 -7.9918 -1.1660 49 1 -1.3703 -5.7298 -0.4659 50 1 -1.2242 -5.7340 -2.2404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755015398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -94.655879 kcal Electronic energy + Delta-G solvation = -30424.625093 eV Core-core repulsion = 26259.443815 eV Total energy + Delta-G solvation = -4165.181278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05432 -39.99754 -38.24008 -37.05400 -35.06887 -34.98908 -34.39288 -32.25713 -31.49420 -30.34329 -29.51120 -27.93516 -26.50393 -25.19085 -24.21861 -23.52271 -22.45607 -21.16137 -20.88777 -19.84022 -18.80730 -17.71310 -17.59521 -17.19471 -16.94791 -16.38420 -15.92259 -15.55602 -15.27932 -14.94275 -14.74470 -14.58360 -14.41928 -14.33962 -14.01428 -13.86232 -13.62549 -13.52332 -13.15186 -12.98206 -12.69044 -12.61979 -12.50294 -12.23019 -12.11978 -11.88136 -11.60799 -11.33526 -11.24516 -11.11334 -11.02465 -10.88886 -10.77227 -10.49981 -10.22462 -10.05269 -9.97147 -9.91448 -9.68148 -9.00916 -8.85463 -8.55290 -6.88685 -5.72186 -3.00814 2.25748 2.45633 2.53614 2.93677 3.47414 3.51151 3.52520 3.92218 4.04015 4.23978 4.29853 4.29961 4.37617 4.58539 4.64787 4.70355 4.77673 4.83464 4.88297 4.95921 5.00466 5.04698 5.06632 5.13361 5.23121 5.30333 5.31975 5.42083 5.45712 5.51277 5.59563 5.60620 5.64536 5.67544 5.68754 5.79325 5.87238 5.95965 5.97709 6.26759 6.30933 6.56686 6.70453 7.03216 7.20019 7.44858 7.72512 7.88173 8.01241 8.46004 9.57604 10.14432 10.50433 11.50601 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.002078 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.343088 B =13470.014535 C =13556.749617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.075 3.925 12 H 0.063 0.937 13 C 0.086 3.914 14 N -0.613 5.613 15 C 0.501 3.499 16 O -0.531 6.531 17 C 0.095 3.905 18 N -0.591 5.591 19 C 0.113 3.887 20 C -0.140 4.140 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.136 4.136 24 C 0.523 3.477 25 O -0.547 6.547 26 C 0.071 3.929 27 C 0.046 3.954 28 O -0.357 6.357 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.054 0.946 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -28.764 4.607 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.348 5.348 15 C 0.287 3.713 16 O -0.407 6.407 17 C -0.032 4.032 18 N -0.322 5.322 19 C -0.010 4.010 20 C -0.179 4.179 21 C -0.161 4.161 22 C -0.150 4.150 23 C -0.176 4.176 24 C 0.311 3.689 25 O -0.425 6.425 26 C -0.052 4.052 27 C -0.032 4.032 28 O -0.275 6.275 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.552 -28.597 4.473 29.677 hybrid contribution 0.011 0.850 0.112 0.857 sum -6.541 -27.747 4.585 28.874 Atomic orbital electron populations 1.69667 1.05114 1.25671 1.57686 1.24746 0.95544 0.97685 1.03041 0.86241 0.78483 0.83452 0.77847 1.21258 1.21718 1.21278 1.19188 0.91009 0.84087 1.42765 0.91175 1.42219 1.05978 0.99493 1.89386 1.20621 0.92426 0.84625 0.98856 1.22793 0.94165 0.94219 0.87180 0.91896 1.22336 0.91778 0.85316 1.04244 1.48178 1.39012 1.23052 1.24569 1.21106 0.84787 0.82878 0.82490 1.90696 1.43302 1.77159 1.29538 1.21373 0.99163 0.89449 0.93198 1.47437 1.41739 1.24860 1.18214 1.21873 0.92528 0.99645 0.86930 1.21827 0.98302 0.95340 1.02393 1.21194 0.98580 0.96813 0.99495 1.21235 0.93782 0.98669 1.01343 1.21989 1.00465 0.97079 0.98102 1.20557 0.78059 0.81600 0.88647 1.90718 1.44093 1.75774 1.31891 1.22633 0.94349 0.99611 0.88648 1.22989 0.90847 0.86394 1.02950 1.88168 1.49574 1.51988 1.37791 0.93525 0.77938 0.94655 0.95222 0.88127 0.90440 0.86813 0.87433 0.89551 0.90070 0.90241 0.91104 0.91618 0.91543 0.91571 0.90561 0.88426 0.89012 0.90058 0.89327 0.92795 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.09 5.55 -59.91 -0.33 -19.42 16 10 C 0.16 3.40 5.93 -4.04 -0.02 3.38 16 11 C 0.08 1.30 2.81 -26.58 -0.07 1.22 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.09 1.29 5.92 -3.54 -0.02 1.27 16 14 N -0.61 -7.91 3.01 -172.02 -0.52 -8.43 16 15 C 0.50 6.72 7.78 -10.99 -0.09 6.63 16 16 O -0.53 -9.10 15.90 5.55 0.09 -9.01 16 17 C 0.09 0.90 4.17 -5.20 -0.02 0.88 16 18 N -0.59 -5.67 1.94 -174.60 -0.34 -6.01 16 19 C 0.11 0.75 5.88 -3.67 -0.02 0.72 16 20 C -0.14 -0.63 5.74 -27.36 -0.16 -0.79 16 21 C -0.12 -0.51 5.27 -27.95 -0.15 -0.66 16 22 C -0.11 -0.60 5.67 -27.30 -0.15 -0.76 16 23 C -0.14 -1.05 5.57 -27.49 -0.15 -1.20 16 24 C 0.52 5.98 6.79 -11.25 -0.08 5.90 16 25 O -0.55 -8.53 16.60 5.56 0.09 -8.44 16 26 C 0.07 0.69 6.57 -3.31 -0.02 0.67 16 27 C 0.05 0.55 7.00 37.53 0.26 0.81 16 28 O -0.36 -6.16 10.34 -35.23 -0.36 -6.52 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.75 7.67 -40.82 -0.31 10.44 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.59 7.08 -51.93 -0.37 1.23 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.11 1.09 7.24 -51.93 -0.38 0.71 16 36 H 0.11 0.66 7.56 -51.93 -0.39 0.27 16 37 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.08 0.54 6.71 -51.93 -0.35 0.19 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 41 H 0.07 0.24 7.88 -51.93 -0.41 -0.17 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.42 7.86 -51.93 -0.41 0.01 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 46 H 0.09 0.61 6.77 -51.93 -0.35 0.26 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.56 6.05 -51.93 -0.31 0.24 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -37.90 394.35 -8.98 -46.88 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.31 Total: 4.71 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.94 Total: 10.54 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.47 Total: -61.86 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.18 Total: -23.98 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.90 -8.98 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755015398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.773 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds