Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86810 * 119.99610 * 2 1 4 4 H 1.48500 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46944 * 299.99689 * 3 2 1 6 6 H 1.48500 * 109.46852 * 60.00013 * 3 2 1 7 7 C 1.37867 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47035 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.45538 * 174.99935 * 10 9 7 12 12 C 1.53193 * 109.30965 * 181.38535 * 11 10 9 13 13 N 1.46926 * 108.77634 * 305.36299 * 12 11 10 14 14 C 1.34771 * 120.63455 * 233.58679 * 13 12 11 15 15 O 1.21587 * 120.00015 * 5.22187 * 14 13 12 16 16 N 1.34774 * 120.00354 * 185.22571 * 14 13 12 17 17 C 1.46497 * 120.00200 * 175.01402 * 16 14 13 18 18 C 1.50702 * 109.47200 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99938 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00255 * 179.97438 * 18 17 16 21 21 C 1.47157 * 120.98208 * 359.72334 * 20 18 17 22 22 C 1.53721 * 108.16195 * 129.42725 * 21 20 18 23 23 O 1.42956 * 109.14604 * 52.54029 * 22 21 20 24 24 C 1.42962 * 114.16693 * 297.28723 * 23 22 21 25 25 C 1.47156 * 120.98462 * 180.02562 * 20 18 17 26 26 C 1.46923 * 118.73603 * 53.86352 * 13 12 11 27 27 C 1.53037 * 109.45994 * 295.06506 * 10 9 7 28 28 H 0.96997 * 120.00491 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46793 * 60.00379 * 9 7 2 30 30 H 1.09004 * 109.46813 * 300.00117 * 9 7 2 31 31 H 1.08999 * 109.45695 * 55.02783 * 10 9 7 32 32 H 1.08999 * 109.50010 * 61.43455 * 11 10 9 33 33 H 1.08996 * 109.52845 * 301.35114 * 11 10 9 34 34 H 1.09002 * 109.58813 * 185.57671 * 12 11 10 35 35 H 1.08997 * 109.70579 * 65.22711 * 12 11 10 36 36 H 0.97002 * 119.99474 * 355.01217 * 16 14 13 37 37 H 1.09001 * 109.47268 * 299.99606 * 17 16 14 38 38 H 1.09000 * 109.47131 * 59.99872 * 17 16 14 39 39 H 1.08995 * 109.68606 * 249.20692 * 21 20 18 40 40 H 1.09002 * 109.68071 * 9.76537 * 21 20 18 41 41 H 1.08999 * 109.65460 * 292.57415 * 22 21 20 42 42 H 1.08997 * 109.48032 * 172.39975 * 22 21 20 43 43 H 1.08997 * 109.51599 * 302.65428 * 24 23 22 44 44 H 1.09006 * 109.55847 * 182.53083 * 24 23 22 45 45 H 1.09004 * 109.67998 * 350.23808 * 25 20 18 46 46 H 1.08999 * 109.68064 * 110.79525 * 25 20 18 47 47 H 1.08996 * 109.59222 * 65.92513 * 26 13 12 48 48 H 1.08995 * 109.59032 * 186.35282 * 26 13 12 49 49 H 1.08998 * 109.50014 * 298.56810 * 27 10 9 50 50 H 1.09008 * 109.49752 * 58.66954 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4842 -4.9836 0.1252 12 6 2.4847 -6.1432 0.1597 13 7 3.3508 -6.0560 -1.0239 14 6 3.4927 -7.1111 -1.8503 15 8 2.8294 -8.1148 -1.6741 16 7 4.3698 -7.0538 -2.8720 17 6 4.6041 -8.2370 -3.7034 18 6 5.6206 -7.9102 -4.7670 19 8 6.1022 -6.7986 -4.8245 20 7 5.9952 -8.8535 -5.6537 21 6 5.4301 -10.2112 -5.5994 22 6 4.9280 -10.5778 -7.0053 23 8 5.9807 -10.3661 -7.9492 24 6 6.4119 -9.0068 -8.0498 25 6 6.9862 -8.5582 -6.7007 26 6 4.0640 -4.7985 -1.2862 27 6 3.0415 -3.6522 -1.3076 28 1 -0.4851 0.8400 -0.0004 29 1 0.6243 -2.5567 -0.8903 30 1 0.6248 -2.5570 0.8897 31 1 2.9292 -3.5551 0.8416 32 1 0.8185 -5.1028 -0.7295 33 1 0.8988 -4.9808 1.0446 34 1 1.9463 -7.0909 0.1495 35 1 3.0920 -6.0779 1.0625 36 1 4.8459 -6.2291 -3.0567 37 1 4.9776 -9.0503 -3.0811 38 1 3.6696 -8.5403 -4.1754 39 1 6.1994 -10.9168 -5.2858 40 1 4.5996 -10.2352 -4.8940 41 1 4.0748 -9.9511 -7.2649 42 1 4.6288 -11.6257 -7.0227 43 1 5.5641 -8.3744 -8.3132 44 1 7.1805 -8.9237 -8.8182 45 1 7.1867 -7.4870 -6.7247 46 1 7.9093 -9.1005 -6.4958 47 1 4.7972 -4.6232 -0.4991 48 1 4.5678 -4.8585 -2.2509 49 1 2.3611 -3.7839 -2.1489 50 1 3.5649 -2.7013 -1.4077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577746462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -129.268719 kcal Electronic energy + Delta-G solvation = -29879.683964 eV Core-core repulsion = 25713.001760 eV Total energy + Delta-G solvation = -4166.682203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82514 -41.15323 -39.47909 -38.78472 -35.97171 -35.74877 -35.62778 -33.95608 -32.58580 -31.96977 -30.21295 -29.47892 -27.96248 -26.17923 -25.06282 -24.22125 -23.62555 -23.01719 -21.47628 -20.88102 -20.33359 -19.29668 -18.40769 -18.20158 -17.62341 -17.31015 -17.20090 -16.80625 -16.52329 -16.40396 -16.10724 -15.90778 -15.55923 -15.32341 -15.13437 -14.92004 -14.79090 -14.47692 -14.35091 -14.28290 -13.84901 -13.58918 -13.49200 -13.31721 -12.98560 -12.83769 -12.73870 -12.52630 -12.38101 -12.31409 -12.16200 -11.81609 -11.73253 -11.45313 -11.30601 -11.26965 -11.07751 -10.98737 -10.82418 -10.52404 -10.37604 -9.73401 -9.49128 -8.16031 -6.25291 1.29876 1.34060 1.40698 1.41617 1.53902 1.86927 2.04602 2.42825 2.83840 2.84653 3.17706 3.19735 3.70067 3.90184 3.92686 4.01498 4.07440 4.08439 4.12854 4.19926 4.20503 4.25382 4.29390 4.41504 4.45083 4.51699 4.63472 4.67626 4.74021 4.81983 4.82387 4.89618 4.91062 4.97313 5.08618 5.18660 5.30239 5.31433 5.33509 5.38700 5.54708 5.59073 5.81654 5.89729 5.92199 6.07219 6.08774 6.30017 6.79523 6.85915 6.91903 7.43377 7.43804 8.96082 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002098 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.753740 B =13340.892070 C =14405.205472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.073 4.073 11 C -0.122 4.122 12 C 0.137 3.863 13 N -0.623 5.623 14 C 0.710 3.290 15 O -0.625 6.625 16 N -0.736 5.736 17 C 0.122 3.878 18 C 0.515 3.485 19 O -0.569 6.569 20 N -0.611 5.611 21 C 0.065 3.935 22 C 0.043 3.957 23 O -0.394 6.394 24 C 0.051 3.949 25 C 0.075 3.925 26 C 0.118 3.882 27 C -0.112 4.112 28 H 0.260 0.740 29 H -0.017 1.017 30 H -0.011 1.011 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.409 0.591 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.132 0.868 43 H 0.052 0.948 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.042 0.958 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.128 -23.805 -13.258 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.085 0.915 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.161 4.161 12 C 0.015 3.985 13 N -0.359 5.359 14 C 0.411 3.589 15 O -0.507 6.507 16 N -0.397 5.397 17 C -0.005 4.005 18 C 0.303 3.697 19 O -0.448 6.448 20 N -0.345 5.345 21 C -0.057 4.057 22 C -0.034 4.034 23 O -0.313 6.313 24 C -0.026 4.026 25 C -0.047 4.047 26 C -0.005 4.005 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.001 0.999 30 H 0.007 0.993 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.881 -23.995 -13.279 31.202 hybrid contribution -0.178 1.938 0.055 1.947 sum 14.703 -22.057 -13.224 29.624 Atomic orbital electron populations 1.70119 1.07860 1.27396 1.52469 1.25973 0.95662 1.03294 0.95279 0.85471 0.79385 0.79217 0.77414 1.18159 1.20930 1.20790 1.21706 0.93624 0.91835 1.49077 0.91506 1.19031 0.94070 0.93154 0.94269 1.21032 0.97039 0.93653 0.97390 1.21928 0.97836 0.94513 1.01782 1.21497 0.91824 0.98947 0.86261 1.47356 1.49317 1.12252 1.26985 1.15762 0.80221 0.83252 0.79646 1.90855 1.50700 1.33106 1.76044 1.44954 1.46286 1.16087 1.32416 1.21008 0.98819 0.88977 0.91721 1.20676 0.82349 0.84226 0.82408 1.90703 1.57305 1.23134 1.73689 1.48148 1.43025 1.12400 1.30903 1.22893 1.01111 0.81884 0.99831 1.23248 0.89215 1.04189 0.86765 1.87967 1.54866 1.27060 1.61364 1.23054 1.00286 0.82922 0.96386 1.22427 0.91783 1.03240 0.87275 1.21869 0.94150 0.82193 1.02260 1.21847 0.97685 0.98196 0.97324 0.93084 0.99876 0.99306 0.91580 0.93736 0.90635 0.89592 0.89826 0.75079 0.86903 0.87542 0.88410 0.86811 0.92556 0.85058 0.93006 0.85593 0.89098 0.89292 0.89457 0.89470 0.93924 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.29 21.44 0.28 -57.07 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.52 -28.84 8.39 25.60 0.21 -28.62 16 8 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 9 C 0.03 1.64 4.45 29.85 0.13 1.78 16 10 C -0.07 -2.82 2.10 -10.77 -0.02 -2.85 16 11 C -0.12 -4.14 5.36 30.67 0.16 -3.98 16 12 C 0.14 3.94 6.44 86.36 0.56 4.50 16 13 N -0.62 -17.90 2.97 -836.09 -2.48 -20.38 16 14 C 0.71 20.86 8.29 179.06 1.49 22.34 16 15 O -0.63 -21.44 15.77 -3.99 -0.06 -21.51 16 16 N -0.74 -17.64 5.44 -482.31 -2.62 -20.26 16 17 C 0.12 2.18 4.53 85.63 0.39 2.56 16 18 C 0.51 9.63 7.78 87.66 0.68 10.31 16 19 O -0.57 -14.73 15.14 -3.04 -0.05 -14.78 16 20 N -0.61 -8.11 3.01 -816.42 -2.46 -10.57 16 21 C 0.06 0.46 6.57 86.50 0.57 1.03 16 22 C 0.04 0.32 7.00 72.22 0.51 0.82 16 23 O -0.39 -4.68 10.74 -148.98 -1.60 -6.28 16 24 C 0.05 0.51 6.99 72.10 0.50 1.01 16 25 C 0.07 0.90 6.64 86.37 0.57 1.48 16 26 C 0.12 3.16 6.42 86.51 0.56 3.71 16 27 C -0.11 -3.92 5.21 30.82 0.16 -3.76 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 2.53 7.00 -2.39 -0.02 2.52 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 9.81 4.92 -92.71 -0.46 9.36 16 37 H 0.11 1.66 8.00 -2.39 -0.02 1.64 16 38 H 0.11 1.72 7.67 -2.39 -0.02 1.70 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 0.52 6.05 -2.39 -0.01 0.51 16 41 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.09 1.37 7.08 -2.38 -0.02 1.35 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.09 2.06 5.64 -2.39 -0.01 2.05 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 50 H 0.07 2.74 6.91 -2.38 -0.02 2.72 16 Total: -1.00 -75.69 391.45 0.45 -75.24 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.49 Total: 19.04 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.93 Total: 10.52 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -7.28 Total: -108.28 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.71 Total: -42.57 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.69 0.45 -75.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577746462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.029 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds