Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99779 * 2 1 4 4 H 1.48500 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47404 * 299.99580 * 3 2 1 6 6 H 1.48503 * 109.47509 * 59.99639 * 3 2 1 7 7 C 1.38811 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 197.37563 * 7 2 1 9 9 N 1.36937 * 120.00180 * 17.38431 * 7 2 1 10 10 C 1.46916 * 120.63127 * 207.67921 * 9 7 2 11 11 C 1.53201 * 108.77783 * 233.58664 * 10 9 7 12 12 C 1.53037 * 109.30734 * 305.36504 * 11 10 9 13 13 N 1.46499 * 109.45790 * 181.38268 * 12 11 10 14 14 C 1.34785 * 120.00120 * 154.99821 * 13 12 11 15 15 O 1.21346 * 119.99554 * 0.02562 * 14 13 12 16 16 C 1.49445 * 119.99835 * 180.02562 * 14 13 12 17 17 O 1.21348 * 120.00582 * 359.97438 * 16 14 13 18 18 N 1.34783 * 119.99914 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00296 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47248 * 179.97438 * 19 18 16 21 21 H 1.08994 * 109.47920 * 60.01990 * 20 19 18 22 22 C 1.53090 * 109.47951 * 180.02562 * 20 19 18 23 23 C 1.53181 * 109.16055 * 177.58714 * 22 20 19 24 24 C 1.53170 * 109.03933 * 303.02016 * 23 22 20 25 25 C 1.53096 * 109.16149 * 56.97850 * 24 23 22 26 26 O 1.42900 * 109.41815 * 302.38916 * 25 24 23 27 27 C 1.53042 * 109.54342 * 61.36402 * 12 11 10 28 28 C 1.46926 * 120.62733 * 27.65616 * 9 7 2 29 29 H 0.97003 * 120.00166 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.59230 * 113.79679 * 10 9 7 31 31 H 1.09003 * 109.58711 * 353.36959 * 10 9 7 32 32 H 1.09000 * 109.49296 * 65.30922 * 11 10 9 33 33 H 1.08996 * 109.49966 * 185.41294 * 11 10 9 34 34 H 1.09000 * 109.46345 * 301.34345 * 12 11 10 35 35 H 0.97003 * 120.00181 * 334.99803 * 13 12 11 36 36 H 0.97003 * 119.99620 * 359.97438 * 18 16 14 37 37 H 1.09007 * 109.46701 * 299.99511 * 19 18 16 38 38 H 1.09000 * 109.47306 * 59.99210 * 19 18 16 39 39 H 1.08995 * 109.52515 * 297.49577 * 22 20 19 40 40 H 1.09005 * 109.52194 * 57.68457 * 22 20 19 41 41 H 1.09000 * 109.53927 * 183.14894 * 23 22 20 42 42 H 1.08996 * 109.54169 * 62.89031 * 23 22 20 43 43 H 1.09005 * 109.52484 * 297.07500 * 24 23 22 44 44 H 1.08995 * 109.57692 * 176.92060 * 24 23 22 45 45 H 1.09002 * 109.48093 * 182.40768 * 25 24 23 46 46 H 1.08999 * 109.48810 * 62.38393 * 25 24 23 47 47 H 1.08995 * 109.50153 * 178.67978 * 27 12 11 48 48 H 1.09002 * 109.52023 * 58.59712 * 27 12 11 49 49 H 1.09008 * 109.58464 * 246.19868 * 28 9 7 50 50 H 1.08997 * 109.59168 * 6.62572 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2799 9 7 1.3725 -2.3611 -0.3533 10 6 1.8193 -3.6546 0.1813 11 6 2.0745 -4.6101 -0.9887 12 6 0.8189 -4.6900 -1.8600 13 7 1.0481 -5.6282 -2.9615 14 6 0.0042 -6.2484 -3.5467 15 8 -1.1254 -6.0292 -3.1615 16 6 0.2381 -7.2060 -4.6700 17 8 1.3677 -7.4249 -5.0555 18 7 -0.8057 -7.8258 -5.2555 19 6 -0.5765 -8.7649 -6.3563 20 6 -1.9170 -9.3244 -6.8369 21 1 -2.5490 -8.5066 -7.1832 22 6 -1.6776 -10.3063 -7.9868 23 6 -3.0177 -10.9072 -8.4221 24 6 -3.6809 -11.5766 -7.2146 25 6 -3.8428 -10.5456 -6.0945 26 8 -2.5638 -10.0038 -5.7589 27 6 0.5010 -3.3049 -2.4280 28 6 0.2281 -2.3346 -1.2743 29 1 -0.4850 0.8401 -0.0004 30 1 1.0469 -4.0687 0.8294 31 1 2.7400 -3.5173 0.7483 32 1 2.9083 -4.2401 -1.5853 33 1 2.3137 -5.6013 -0.6035 34 1 -0.0203 -5.0364 -1.2568 35 1 1.9510 -5.8032 -3.2697 36 1 -1.7087 -7.6505 -4.9476 37 1 -0.0826 -8.2472 -7.1786 38 1 0.0553 -9.5830 -6.0103 39 1 -1.2243 -9.7801 -8.8268 40 1 -1.0125 -11.1028 -7.6531 41 1 -2.8483 -11.6487 -9.2028 42 1 -3.6652 -10.1171 -8.8022 43 1 -3.0563 -12.3988 -6.8652 44 1 -4.6601 -11.9597 -7.5015 45 1 -4.2753 -11.0268 -5.2172 46 1 -4.5004 -9.7439 -6.4305 47 1 -0.3797 -3.3671 -3.0671 48 1 1.3493 -2.9469 -3.0113 49 1 -0.6742 -2.6411 -0.7449 50 1 0.0988 -1.3264 -1.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585774445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = -108.463894 kcal Electronic energy + Delta-G solvation = -29575.114876 eV Core-core repulsion = 25409.334837 eV Total energy + Delta-G solvation = -4165.780038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69316 -39.88625 -38.66201 -37.28343 -35.47750 -34.38895 -34.13204 -32.15602 -31.95005 -30.11721 -29.54498 -27.86303 -25.64571 -24.75707 -23.83973 -22.52766 -22.25303 -21.58518 -20.86643 -20.13616 -19.50992 -18.34289 -17.02272 -16.86755 -16.77235 -16.40108 -15.83281 -15.61070 -15.42833 -14.99110 -14.88693 -14.68256 -14.22531 -14.03777 -13.76313 -13.52389 -13.44948 -13.23332 -13.01281 -12.98622 -12.67888 -12.52057 -12.42672 -11.82841 -11.64378 -11.60363 -11.49672 -11.25788 -11.12641 -10.93277 -10.82940 -10.73555 -10.41167 -10.23581 -10.08527 -9.97720 -9.77994 -9.74187 -9.44178 -9.39283 -8.81732 -8.44131 -6.69598 -5.78686 -3.21122 1.48755 2.37152 3.19439 3.31074 3.37894 3.45915 3.48014 3.68323 4.14876 4.30434 4.32012 4.45111 4.49902 4.56417 4.61236 4.67211 4.92417 5.06555 5.14657 5.19697 5.26354 5.28200 5.39257 5.39447 5.41826 5.44427 5.51866 5.57940 5.59175 5.76476 5.79744 6.00450 6.05213 6.21348 6.26121 6.39890 6.55587 6.64384 6.72030 6.73405 6.77858 6.92368 6.99801 7.35587 7.47641 7.67070 7.78217 7.80391 8.13131 8.44716 9.20794 9.84139 10.40388 11.29975 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.001835 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.916398 B =15259.082989 C =15473.034686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.140 4.140 12 C 0.148 3.852 13 N -0.691 5.691 14 C 0.503 3.497 15 O -0.521 6.521 16 C 0.508 3.492 17 O -0.525 6.525 18 N -0.698 5.698 19 C 0.127 3.873 20 C 0.077 3.923 21 H 0.068 0.932 22 C -0.148 4.148 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.375 6.375 27 C -0.148 4.148 28 C 0.173 3.827 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.407 0.593 36 H 0.417 0.583 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.022 0.978 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -22.947 -16.739 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.180 4.180 12 C 0.046 3.954 13 N -0.342 5.342 14 C 0.283 3.717 15 O -0.397 6.397 16 C 0.289 3.711 17 O -0.401 6.401 18 N -0.351 5.351 19 C 0.003 3.997 20 C 0.019 3.981 21 H 0.086 0.914 22 C -0.186 4.186 23 C -0.160 4.160 24 C -0.196 4.196 25 C -0.016 4.016 26 O -0.294 6.294 27 C -0.188 4.188 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.040 0.960 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.616 -22.803 -16.525 28.716 hybrid contribution 0.198 0.771 -0.409 0.895 sum -5.418 -22.032 -16.933 28.311 Atomic orbital electron populations 1.70047 1.05264 1.25451 1.53807 1.25054 0.95288 0.98470 1.00889 0.86230 0.79362 0.83952 0.77255 1.20250 1.21579 1.21743 1.19223 0.92755 0.84797 1.41485 0.91527 1.44119 1.35856 1.01432 1.50126 1.20846 0.98107 0.86651 0.92238 1.22367 0.96531 1.00028 0.99078 1.21232 0.99273 0.88682 0.86254 1.46188 1.09567 1.43068 1.35415 1.19964 0.85918 0.82078 0.83767 1.90773 1.22200 1.63479 1.63255 1.20381 0.85110 0.81835 0.83749 1.90746 1.22373 1.63351 1.63644 1.45625 1.10724 1.43452 1.35339 1.21504 0.95785 0.92529 0.89834 1.22355 0.93566 0.94209 0.87967 0.91372 1.22130 0.98522 0.99713 0.98246 1.21575 0.96220 1.00373 0.97784 1.22209 1.01741 0.99331 0.96297 1.22605 0.84875 0.95576 0.98585 1.87997 1.32736 1.73297 1.35338 1.22595 1.00661 0.94820 1.00708 1.20775 0.88710 0.98202 0.87606 0.93632 0.96075 0.92162 0.91559 0.92358 0.89575 0.75745 0.74643 0.89440 0.90136 0.90322 0.90478 0.91162 0.91645 0.90930 0.90777 0.88566 0.92965 0.92752 0.92383 0.96019 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 10 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 11 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 12 C 0.15 2.59 2.41 -67.89 -0.16 2.43 16 13 N -0.69 -10.50 5.07 -54.20 -0.27 -10.78 16 14 C 0.50 7.81 7.85 -11.58 -0.09 7.72 16 15 O -0.52 -9.29 16.14 5.50 0.09 -9.20 16 16 C 0.51 6.96 7.89 -11.58 -0.09 6.87 16 17 O -0.53 -7.97 16.48 5.50 0.09 -7.88 16 18 N -0.70 -7.68 5.44 -60.73 -0.33 -8.01 16 19 C 0.13 1.09 5.37 -4.04 -0.02 1.06 16 20 C 0.08 0.53 2.73 -26.68 -0.07 0.46 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.15 -0.78 5.42 -26.59 -0.14 -0.92 16 23 C -0.12 -0.56 6.03 -26.55 -0.16 -0.72 16 24 C -0.16 -0.77 6.14 -26.59 -0.16 -0.93 16 25 C 0.06 0.37 6.84 37.21 0.25 0.62 16 26 O -0.37 -3.21 10.15 -35.23 -0.36 -3.56 16 27 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 28 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 35 H 0.41 5.55 8.07 -40.82 -0.33 5.22 16 36 H 0.42 4.47 7.82 -40.82 -0.32 4.15 16 37 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 50 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -32.06 398.62 -9.43 -41.49 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.50 Total: 5.01 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -1.23 Total: 11.13 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.50 Total: -59.63 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.18 Total: -20.64 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.06 -9.43 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585774445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.970 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds