Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00693 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99923 * 3 2 1 6 6 H 1.48490 * 109.47441 * 150.00251 * 3 2 1 7 7 C 1.38811 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00061 * 163.06612 * 7 2 1 9 9 N 1.36939 * 119.99672 * 343.06349 * 7 2 1 10 10 C 1.46924 * 120.63031 * 331.83576 * 9 7 2 11 11 C 1.53196 * 108.77729 * 233.63144 * 10 9 7 12 12 C 1.53043 * 109.31073 * 305.36831 * 11 10 9 13 13 N 1.46499 * 109.45573 * 181.38561 * 12 11 10 14 14 C 1.34779 * 120.00184 * 155.00411 * 13 12 11 15 15 O 1.21357 * 119.99573 * 359.97438 * 14 13 12 16 16 C 1.49440 * 120.00353 * 180.02562 * 14 13 12 17 17 O 1.21347 * 120.00139 * 359.97438 * 16 14 13 18 18 N 1.34779 * 120.00353 * 180.02562 * 16 14 13 19 19 C 1.46499 * 120.00184 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46845 * 179.97438 * 19 18 16 21 21 H 1.09003 * 109.48119 * 304.97169 * 20 19 18 22 22 C 1.53095 * 109.48072 * 184.94240 * 20 19 18 23 23 C 1.53173 * 109.16515 * 182.40923 * 22 20 19 24 24 C 1.53178 * 109.03703 * 56.97875 * 23 22 20 25 25 C 1.53090 * 109.16427 * 303.01868 * 24 23 22 26 26 O 1.42902 * 109.41518 * 57.60879 * 25 24 23 27 27 C 1.53040 * 109.54015 * 61.36512 * 12 11 10 28 28 C 1.46924 * 120.62873 * 151.86566 * 9 7 2 29 29 H 0.96998 * 119.99828 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58160 * 113.84582 * 10 9 7 31 31 H 1.08999 * 109.70464 * 353.49407 * 10 9 7 32 32 H 1.08997 * 109.49369 * 185.41736 * 11 10 9 33 33 H 1.08994 * 109.51944 * 65.33279 * 11 10 9 34 34 H 1.09001 * 109.46410 * 301.35495 * 12 11 10 35 35 H 0.97005 * 120.00040 * 334.99708 * 13 12 11 36 36 H 0.97005 * 119.99776 * 359.97438 * 18 16 14 37 37 H 1.09000 * 109.47247 * 59.99612 * 19 18 16 38 38 H 1.09001 * 109.46708 * 299.99308 * 19 18 16 39 39 H 1.09003 * 109.51609 * 302.31576 * 22 20 19 40 40 H 1.09002 * 109.52182 * 62.49695 * 22 20 19 41 41 H 1.09003 * 109.54133 * 297.10993 * 23 22 20 42 42 H 1.08996 * 109.54485 * 176.84667 * 23 22 20 43 43 H 1.08998 * 109.51979 * 183.11558 * 24 23 22 44 44 H 1.08998 * 109.52479 * 62.92427 * 24 23 22 45 45 H 1.09000 * 109.48696 * 177.59397 * 25 24 23 46 46 H 1.09003 * 109.48242 * 297.61723 * 25 24 23 47 47 H 1.09000 * 109.49547 * 58.58459 * 27 12 11 48 48 H 1.08994 * 109.49891 * 178.68331 * 27 12 11 49 49 H 1.09004 * 109.58258 * 246.15193 * 28 9 7 50 50 H 1.09001 * 109.58969 * 6.43344 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3701 -2.3625 0.3444 10 6 0.2263 -2.3408 1.2665 11 6 0.4984 -3.3200 2.4128 12 6 0.8134 -4.7014 1.8343 13 7 1.0416 -5.6482 2.9287 14 6 0.8388 -6.9662 2.7328 15 8 0.4667 -7.3685 1.6501 16 6 1.0711 -7.9320 3.8493 17 8 1.4427 -7.5297 4.9322 18 7 0.8688 -9.2500 3.6534 19 6 1.0970 -10.1969 4.7477 20 6 0.7961 -11.6170 4.2645 21 1 -0.2153 -11.6567 3.8599 22 6 0.9149 -12.5919 5.4389 23 6 0.6715 -14.0179 4.9353 24 6 1.6707 -14.3302 3.8172 25 6 1.5227 -13.2883 2.7054 26 8 1.7309 -11.9825 3.2473 27 6 2.0685 -4.6173 0.9627 28 6 1.8143 -3.6528 -0.2000 29 1 -0.4850 0.8400 0.0004 30 1 -0.6768 -2.6416 0.7354 31 1 0.0966 -1.3356 1.6675 32 1 -0.3820 -3.3853 3.0520 33 1 1.3479 -2.9684 2.9982 34 1 -0.0267 -5.0419 1.2289 35 1 1.3388 -5.3266 3.7942 36 1 0.5720 -9.5717 2.7877 37 1 0.4417 -9.9512 5.5834 38 1 2.1363 -10.1352 5.0706 39 1 1.9138 -12.5232 5.8696 40 1 0.1725 -12.3415 6.1967 41 1 -0.3447 -14.0999 4.5497 42 1 0.8097 -14.7227 5.7552 43 1 1.4688 -15.3230 3.4152 44 1 2.6849 -14.2967 4.2151 45 1 2.2605 -13.4805 1.9264 46 1 0.5209 -13.3501 2.2803 47 1 2.9034 -4.2533 1.5614 48 1 2.3056 -5.6060 0.5700 49 1 1.0406 -4.0607 -0.8505 50 1 2.7334 -3.5125 -0.7688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585774454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = -108.811897 kcal Electronic energy + Delta-G solvation = -29523.887993 eV Core-core repulsion = 25358.092864 eV Total energy + Delta-G solvation = -4165.795129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71137 -39.89908 -38.67930 -37.28816 -35.49935 -34.39515 -34.14336 -32.15288 -31.96725 -30.18379 -29.48910 -27.87259 -25.65097 -24.76426 -23.85763 -22.56235 -22.23718 -21.60307 -20.88217 -20.14026 -19.51202 -18.36819 -17.01827 -16.89465 -16.77160 -16.38877 -15.80625 -15.74219 -15.35728 -15.00904 -14.87148 -14.73280 -14.23644 -14.08788 -13.71761 -13.54571 -13.48010 -13.23842 -13.05734 -12.93956 -12.69804 -12.56177 -12.40358 -11.84534 -11.66032 -11.61825 -11.47126 -11.26913 -11.12932 -10.86079 -10.83390 -10.70623 -10.51210 -10.30242 -10.06175 -9.99234 -9.83569 -9.67571 -9.46443 -9.40812 -8.84020 -8.46455 -6.68883 -5.79791 -3.21856 1.46509 2.35432 3.18727 3.28674 3.38001 3.45200 3.47734 3.66302 4.13198 4.29230 4.31157 4.44153 4.49914 4.54544 4.59664 4.65876 4.90949 5.05722 5.12103 5.18887 5.27346 5.30551 5.38477 5.39120 5.40543 5.47819 5.50831 5.54463 5.56823 5.75326 5.82506 5.98743 6.05311 6.18961 6.28665 6.49393 6.51450 6.55954 6.71547 6.74117 6.79474 6.94748 6.99334 7.30508 7.44237 7.61900 7.76313 7.80089 8.10677 8.44401 9.20495 9.83630 10.40404 11.29271 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.001781 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.221114 B =15720.591935 C =16033.965678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.148 4.148 12 C 0.148 3.852 13 N -0.690 5.690 14 C 0.503 3.497 15 O -0.524 6.524 16 C 0.508 3.492 17 O -0.524 6.524 18 N -0.699 5.699 19 C 0.126 3.874 20 C 0.077 3.923 21 H 0.068 0.932 22 C -0.148 4.148 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.374 6.374 27 C -0.141 4.141 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.408 0.592 36 H 0.416 0.584 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.021 0.979 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.002 -28.010 11.104 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.341 5.341 14 C 0.283 3.717 15 O -0.400 6.400 16 C 0.289 3.711 17 O -0.399 6.399 18 N -0.352 5.352 19 C 0.003 3.997 20 C 0.019 3.981 21 H 0.086 0.914 22 C -0.186 4.186 23 C -0.160 4.160 24 C -0.196 4.196 25 C -0.016 4.016 26 O -0.294 6.294 27 C -0.181 4.181 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.039 0.961 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.038 -27.711 11.030 29.826 hybrid contribution 0.226 0.516 0.147 0.582 sum 0.264 -27.195 11.177 29.404 Atomic orbital electron populations 1.70020 1.05258 1.25557 1.53925 1.25052 0.95295 0.98443 1.00854 0.86301 0.79162 0.83609 0.77722 1.21392 1.21565 1.20494 1.19175 0.92593 0.84728 1.41695 0.91643 1.44090 1.35824 1.01671 1.49929 1.20751 0.88928 0.97932 0.87585 1.22572 1.00879 0.94331 1.00987 1.21239 0.98926 0.88183 0.87081 1.46218 1.65571 1.05504 1.16816 1.19980 0.79625 0.84044 0.88058 1.90762 1.45398 1.78226 1.25632 1.20377 0.78487 0.83613 0.88631 1.90752 1.44793 1.78470 1.25932 1.45644 1.67512 1.05623 1.16463 1.21496 1.03268 0.85393 0.89538 1.22349 0.93331 0.93186 0.89201 0.91403 1.22129 1.03650 0.95000 0.97840 1.21577 0.99413 0.96333 0.98627 1.22211 1.00617 0.99609 0.97155 1.22604 1.01621 0.82137 0.95288 1.88007 1.54453 1.32828 1.54070 1.22405 0.96990 0.99767 0.98918 1.20869 0.98022 0.86487 0.92502 0.93591 0.96002 0.88889 0.92493 0.91871 0.89574 0.75632 0.74753 0.89420 0.90021 0.90450 0.90328 0.91660 0.91153 0.90776 0.90903 0.88569 0.92994 0.92028 0.92591 0.96093 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 10 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 11 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 12 C 0.15 2.59 2.42 -67.89 -0.16 2.43 16 13 N -0.69 -10.46 5.07 -54.20 -0.27 -10.74 16 14 C 0.50 7.66 7.85 -11.59 -0.09 7.57 16 15 O -0.52 -9.04 16.14 5.49 0.09 -8.95 16 16 C 0.51 6.85 7.89 -11.59 -0.09 6.76 16 17 O -0.52 -7.92 16.48 5.50 0.09 -7.83 16 18 N -0.70 -7.48 5.50 -60.73 -0.33 -7.82 16 19 C 0.13 1.06 5.34 -4.04 -0.02 1.04 16 20 C 0.08 0.52 2.68 -26.68 -0.07 0.45 16 21 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 22 C -0.15 -0.76 5.42 -26.59 -0.14 -0.90 16 23 C -0.12 -0.54 6.03 -26.55 -0.16 -0.70 16 24 C -0.16 -0.75 6.14 -26.59 -0.16 -0.91 16 25 C 0.06 0.36 6.84 37.20 0.25 0.61 16 26 O -0.37 -3.17 10.35 -35.23 -0.36 -3.53 16 27 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 28 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.41 5.66 8.07 -40.82 -0.33 5.33 16 36 H 0.42 4.27 7.94 -40.82 -0.32 3.94 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -31.71 398.95 -9.44 -41.15 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.51 Total: 4.85 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.22 Total: 10.90 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.50 Total: -59.14 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.19 Total: -20.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.71 -9.44 -41.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585774454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.658 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds