Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.99997 * 2 1 4 4 O 1.42901 * 109.46821 * 301.08996 * 3 2 1 5 5 C 1.54324 * 109.87822 * 121.09405 * 2 1 3 6 6 C 1.55159 * 102.94473 * 97.22376 * 5 2 1 7 7 C 1.54911 * 101.61235 * 35.48232 * 6 5 2 8 8 N 1.47022 * 109.88257 * 238.89681 * 2 1 3 9 9 C 1.34785 * 125.64451 * 59.49245 * 8 2 1 10 10 O 1.21343 * 119.99864 * 359.97438 * 9 8 2 11 11 C 1.49449 * 119.99651 * 179.97438 * 9 8 2 12 12 O 1.21350 * 119.99916 * 359.97438 * 11 9 8 13 13 N 1.34770 * 119.99668 * 180.02562 * 11 9 8 14 14 C 1.46506 * 120.00254 * 180.02562 * 13 11 9 15 15 C 1.53040 * 109.45864 * 275.06783 * 14 13 11 16 16 C 1.53185 * 109.31104 * 178.61081 * 15 14 13 17 17 N 1.46924 * 108.77861 * 54.63288 * 16 15 14 18 18 C 1.36938 * 120.63108 * 126.40937 * 17 16 15 19 19 H 1.07998 * 120.00102 * 207.65980 * 18 17 16 20 20 C 1.38817 * 119.99790 * 27.65854 * 18 17 16 21 21 N 1.31614 * 119.99996 * 17.38218 * 20 18 17 22 22 Si 1.86799 * 119.99892 * 197.37374 * 20 18 17 23 23 H 1.48501 * 109.47098 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46804 * 120.00358 * 22 20 18 25 25 H 1.48500 * 109.47475 * 240.00369 * 22 20 18 26 26 C 1.46920 * 118.74074 * 306.39323 * 17 16 15 27 27 C 1.53032 * 109.46449 * 154.99540 * 14 13 11 28 28 H 1.08999 * 109.47047 * 298.90793 * 1 2 3 29 29 H 1.09008 * 109.46757 * 58.90770 * 1 2 3 30 30 H 1.08997 * 109.46952 * 178.90553 * 1 2 3 31 31 H 1.08994 * 109.47305 * 61.09138 * 3 2 1 32 32 H 1.09000 * 109.47202 * 181.09691 * 3 2 1 33 33 H 0.96698 * 114.00393 * 179.97438 * 4 3 2 34 34 H 1.09005 * 110.72136 * 338.85970 * 5 2 1 35 35 H 1.09007 * 110.72013 * 215.58694 * 5 2 1 36 36 H 1.08993 * 111.00452 * 153.56944 * 6 5 2 37 37 H 1.09000 * 111.00232 * 277.39057 * 6 5 2 38 38 H 1.08996 * 110.37127 * 81.85113 * 7 6 5 39 39 H 1.09001 * 110.36191 * 204.16925 * 7 6 5 40 40 H 0.97001 * 120.00129 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.45525 * 35.02131 * 14 13 11 42 42 H 1.08996 * 109.49550 * 298.56400 * 15 14 13 43 43 H 1.09001 * 109.49674 * 58.65387 * 15 14 13 44 44 H 1.09001 * 109.59112 * 294.84215 * 16 15 14 45 45 H 1.09009 * 109.58589 * 174.42400 * 16 15 14 46 46 H 0.97002 * 120.00389 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.58345 * 293.82003 * 26 17 16 48 48 H 1.08994 * 109.70850 * 173.46091 * 26 17 16 49 49 H 1.09005 * 109.49713 * 301.33823 * 27 14 13 50 50 H 1.08998 * 109.49879 * 61.40125 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 8 1.5624 2.1232 -1.1538 5 6 2.0548 -0.7495 1.2428 6 6 2.3518 -2.1695 0.6926 7 6 2.8565 -1.8508 -0.7369 8 7 2.0300 -0.7142 -1.1838 9 6 1.7743 -0.3854 -2.4657 10 8 1.0760 0.5743 -2.7181 11 6 2.3508 -1.2030 -3.5760 12 8 3.0495 -2.1625 -3.3234 13 7 2.0954 -0.8739 -4.8577 14 6 2.6600 -1.6756 -5.9463 15 6 4.0776 -1.1888 -6.2557 16 6 4.6775 -2.0515 -7.3704 17 7 3.7679 -2.0332 -8.5240 18 6 4.2245 -1.6843 -9.7670 19 1 3.5497 -1.2440 -10.4862 20 6 5.5547 -1.8965 -10.1026 21 7 6.2894 -2.7234 -9.3894 22 14 6.3017 -1.0086 -11.5665 23 1 5.2739 -0.1415 -12.1966 24 1 7.4412 -0.1731 -11.1097 25 1 6.7839 -2.0049 -12.5565 26 6 2.3592 -2.3966 -8.3189 27 6 1.7853 -1.5301 -7.1935 28 1 -0.3633 0.4968 0.8996 29 1 -0.3633 0.5308 -0.8801 30 1 -0.3633 -1.0275 -0.0196 31 1 1.7108 1.9491 0.8995 32 1 3.1431 1.4278 -0.0197 33 1 1.8547 3.0427 -1.2191 34 1 1.2916 -0.7889 2.0201 35 1 2.9656 -0.2831 1.6184 36 1 3.1269 -2.6618 1.2798 37 1 1.4452 -2.7738 0.6612 38 1 3.9089 -1.5682 -0.7135 39 1 2.7079 -2.7094 -1.3918 40 1 1.5372 -0.1068 -5.0596 41 1 2.6934 -2.7230 -5.6463 42 1 4.0424 -0.1487 -6.5796 43 1 4.6939 -1.2709 -5.3604 44 1 4.7973 -3.0753 -7.0158 45 1 5.6470 -1.6482 -7.6629 46 1 7.2188 -2.8720 -9.6241 47 1 2.2899 -3.4485 -8.0416 48 1 1.7974 -2.2229 -9.2366 49 1 0.7700 -1.8551 -6.9657 50 1 1.7712 -0.4867 -7.5083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = -86.048345 kcal Electronic energy + Delta-G solvation = -31147.014370 eV Core-core repulsion = 26982.206343 eV Total energy + Delta-G solvation = -4164.808027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96376 -39.43756 -37.68912 -37.23120 -36.35328 -34.50665 -32.30164 -32.05675 -31.50209 -30.09537 -29.51453 -26.96677 -25.96834 -25.28258 -24.25053 -22.41471 -22.24899 -21.68828 -20.50803 -19.58931 -18.69475 -17.63895 -17.26000 -16.77005 -16.65582 -16.35761 -15.60159 -15.41322 -14.84146 -14.74158 -14.43430 -14.03903 -13.92068 -13.67898 -13.60216 -13.50766 -13.03871 -12.99900 -12.77963 -12.63877 -12.53456 -12.42060 -12.23265 -11.89190 -11.69919 -11.47690 -11.16952 -11.11341 -10.97546 -10.93598 -10.82841 -10.73343 -10.39423 -10.22833 -10.10547 -10.06884 -9.76829 -9.66832 -9.14310 -8.83812 -8.70665 -8.43177 -6.69183 -5.78391 -3.20745 1.68021 2.36882 3.37950 3.44239 3.45994 3.48167 3.57947 3.89682 4.17080 4.38299 4.50145 4.57746 4.68183 4.80228 4.88501 5.04275 5.09841 5.23592 5.27977 5.32242 5.36233 5.40119 5.45317 5.54506 5.59245 5.60564 5.70126 5.77396 5.81627 5.86126 6.03656 6.06751 6.23626 6.27369 6.31182 6.41967 6.57428 6.65192 6.75255 6.83393 6.92983 7.22641 7.36488 7.51376 7.54372 7.67550 7.80636 7.95745 8.25249 8.45043 9.21153 9.84513 10.40820 11.30268 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.002440 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.466676 B =11471.273877 C =11668.575850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C 0.069 3.931 4 O -0.534 6.534 5 C -0.123 4.123 6 C -0.134 4.134 7 C 0.096 3.904 8 N -0.589 5.589 9 C 0.517 3.483 10 O -0.480 6.480 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.692 5.692 14 C 0.150 3.850 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.149 3.851 27 C -0.140 4.140 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.366 0.634 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.407 0.593 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 5.531 23.633 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.080 3.920 3 C -0.010 4.010 4 O -0.337 6.337 5 C -0.161 4.161 6 C -0.173 4.173 7 C -0.026 4.026 8 N -0.325 5.325 9 C 0.299 3.701 10 O -0.352 6.352 11 C 0.284 3.716 12 O -0.400 6.400 13 N -0.343 5.343 14 C 0.047 3.953 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.180 4.180 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.212 0.788 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.930 4.758 23.386 25.849 hybrid contribution 0.640 1.344 -0.538 1.583 sum -9.289 6.102 22.848 25.407 Atomic orbital electron populations 1.22081 0.93357 1.02179 1.03514 1.21110 0.95289 0.90558 0.85021 1.22526 0.97076 0.92259 0.89138 1.86973 1.75312 1.27867 1.43553 1.22694 1.01963 0.95802 0.95680 1.22845 1.02261 0.96321 0.95825 1.22643 0.94638 0.90100 0.95231 1.48277 1.50228 1.30113 1.03923 1.19930 0.82380 0.85174 0.82621 1.90790 1.35819 1.26149 1.82428 1.20110 0.81936 0.85172 0.84377 1.90700 1.37482 1.28270 1.83520 1.46170 1.50968 1.32347 1.04859 1.21194 0.94165 0.95300 0.84661 1.22582 0.94578 1.01315 1.00222 1.20762 0.94792 0.95547 0.84100 1.44120 1.03739 1.78485 1.05211 1.19224 0.94344 1.33632 0.91056 0.91541 1.25051 0.98430 0.97950 0.98256 1.70043 1.07986 1.35147 1.41389 0.86233 0.79132 0.79273 0.82187 1.20248 1.21581 1.21730 1.20833 0.87163 0.94741 0.95054 1.22360 0.97607 1.02286 0.95728 0.92021 0.89995 0.92602 0.93169 0.93880 0.78839 0.89538 0.90280 0.89528 0.90469 0.91194 0.87923 0.75813 0.89711 0.92461 0.92827 0.96075 0.89135 0.93641 0.96139 0.92199 0.92426 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.22 37.16 0.31 -1.17 16 2 C 0.16 1.56 0.79 -130.84 -0.10 1.45 16 3 C 0.07 0.62 5.99 37.16 0.22 0.85 16 4 O -0.53 -6.00 9.42 -59.64 -0.56 -6.57 16 5 C -0.12 -0.78 6.02 -24.90 -0.15 -0.93 16 6 C -0.13 -0.93 7.08 -24.58 -0.17 -1.10 16 7 C 0.10 1.00 6.06 -2.51 -0.02 0.99 16 8 N -0.59 -7.09 2.82 -156.28 -0.44 -7.53 16 9 C 0.52 7.60 7.38 -11.58 -0.09 7.51 16 10 O -0.48 -7.65 12.26 -18.91 -0.23 -7.88 16 11 C 0.50 8.09 7.82 -11.59 -0.09 8.00 16 12 O -0.52 -9.27 13.44 5.50 0.07 -9.19 16 13 N -0.69 -10.84 5.07 -54.20 -0.27 -11.12 16 14 C 0.15 2.65 2.41 -67.89 -0.16 2.49 16 15 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 16 C 0.17 4.23 5.31 -3.72 -0.02 4.21 16 17 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 18 C -0.25 -6.92 9.59 -15.06 -0.14 -7.06 16 19 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -26.29 11.19 55.49 0.62 -25.66 16 22 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.15 3.08 6.51 -3.71 -0.02 3.05 16 27 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.03 6.32 -51.92 -0.33 0.71 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 2.72 9.12 45.56 0.42 3.13 16 34 H 0.09 0.42 7.83 -51.93 -0.41 0.01 16 35 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.26 6.16 -51.93 -0.32 0.94 16 40 H 0.41 5.83 8.07 -40.82 -0.33 5.50 16 41 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 2.46 6.04 -51.92 -0.31 2.14 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -32.88 386.35 -8.91 -41.79 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.54 Total: 6.37 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -0.83 Total: 12.61 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.61 Total: -59.65 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.72 Total: -23.64 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -8.91 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.262 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds