Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.99997 * 2 1 4 4 O 1.42901 * 109.46821 * 301.08996 * 3 2 1 5 5 C 1.54324 * 109.87822 * 121.09405 * 2 1 3 6 6 C 1.55159 * 102.94473 * 97.22376 * 5 2 1 7 7 C 1.54911 * 101.61235 * 35.48232 * 6 5 2 8 8 N 1.47022 * 109.88257 * 238.89681 * 2 1 3 9 9 C 1.34785 * 125.64451 * 59.49245 * 8 2 1 10 10 O 1.21343 * 119.99864 * 359.97438 * 9 8 2 11 11 C 1.49449 * 119.99651 * 179.97438 * 9 8 2 12 12 O 1.21350 * 119.99916 * 359.97438 * 11 9 8 13 13 N 1.34770 * 119.99668 * 180.02562 * 11 9 8 14 14 C 1.46506 * 120.00254 * 180.02562 * 13 11 9 15 15 C 1.53040 * 109.45864 * 275.06783 * 14 13 11 16 16 C 1.53185 * 109.31104 * 178.61081 * 15 14 13 17 17 N 1.46924 * 108.77861 * 54.63288 * 16 15 14 18 18 C 1.36938 * 120.63108 * 126.40937 * 17 16 15 19 19 H 1.07998 * 120.00102 * 207.65980 * 18 17 16 20 20 C 1.38817 * 119.99790 * 27.65854 * 18 17 16 21 21 N 1.31614 * 119.99996 * 17.38218 * 20 18 17 22 22 Si 1.86799 * 119.99892 * 197.37374 * 20 18 17 23 23 H 1.48501 * 109.47098 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46804 * 120.00358 * 22 20 18 25 25 H 1.48500 * 109.47475 * 240.00369 * 22 20 18 26 26 C 1.46920 * 118.74074 * 306.39323 * 17 16 15 27 27 C 1.53032 * 109.46449 * 154.99540 * 14 13 11 28 28 H 1.08999 * 109.47047 * 298.90793 * 1 2 3 29 29 H 1.09008 * 109.46757 * 58.90770 * 1 2 3 30 30 H 1.08997 * 109.46952 * 178.90553 * 1 2 3 31 31 H 1.08994 * 109.47305 * 61.09138 * 3 2 1 32 32 H 1.09000 * 109.47202 * 181.09691 * 3 2 1 33 33 H 0.96698 * 114.00393 * 179.97438 * 4 3 2 34 34 H 1.09005 * 110.72136 * 338.85970 * 5 2 1 35 35 H 1.09007 * 110.72013 * 215.58694 * 5 2 1 36 36 H 1.08993 * 111.00452 * 153.56944 * 6 5 2 37 37 H 1.09000 * 111.00232 * 277.39057 * 6 5 2 38 38 H 1.08996 * 110.37127 * 81.85113 * 7 6 5 39 39 H 1.09001 * 110.36191 * 204.16925 * 7 6 5 40 40 H 0.97001 * 120.00129 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.45525 * 35.02131 * 14 13 11 42 42 H 1.08996 * 109.49550 * 298.56400 * 15 14 13 43 43 H 1.09001 * 109.49674 * 58.65387 * 15 14 13 44 44 H 1.09001 * 109.59112 * 294.84215 * 16 15 14 45 45 H 1.09009 * 109.58589 * 174.42400 * 16 15 14 46 46 H 0.97002 * 120.00389 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.58345 * 293.82003 * 26 17 16 48 48 H 1.08994 * 109.70850 * 173.46091 * 26 17 16 49 49 H 1.09005 * 109.49713 * 301.33823 * 27 14 13 50 50 H 1.08998 * 109.49879 * 61.40125 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 8 1.5624 2.1232 -1.1538 5 6 2.0548 -0.7495 1.2428 6 6 2.3518 -2.1695 0.6926 7 6 2.8565 -1.8508 -0.7369 8 7 2.0300 -0.7142 -1.1838 9 6 1.7743 -0.3854 -2.4657 10 8 1.0760 0.5743 -2.7181 11 6 2.3508 -1.2030 -3.5760 12 8 3.0495 -2.1625 -3.3234 13 7 2.0954 -0.8739 -4.8577 14 6 2.6600 -1.6756 -5.9463 15 6 4.0776 -1.1888 -6.2557 16 6 4.6775 -2.0515 -7.3704 17 7 3.7679 -2.0332 -8.5240 18 6 4.2245 -1.6843 -9.7670 19 1 3.5497 -1.2440 -10.4862 20 6 5.5547 -1.8965 -10.1026 21 7 6.2894 -2.7234 -9.3894 22 14 6.3017 -1.0086 -11.5665 23 1 5.2739 -0.1415 -12.1966 24 1 7.4412 -0.1731 -11.1097 25 1 6.7839 -2.0049 -12.5565 26 6 2.3592 -2.3966 -8.3189 27 6 1.7853 -1.5301 -7.1935 28 1 -0.3633 0.4968 0.8996 29 1 -0.3633 0.5308 -0.8801 30 1 -0.3633 -1.0275 -0.0196 31 1 1.7108 1.9491 0.8995 32 1 3.1431 1.4278 -0.0197 33 1 1.8547 3.0427 -1.2191 34 1 1.2916 -0.7889 2.0201 35 1 2.9656 -0.2831 1.6184 36 1 3.1269 -2.6618 1.2798 37 1 1.4452 -2.7738 0.6612 38 1 3.9089 -1.5682 -0.7135 39 1 2.7079 -2.7094 -1.3918 40 1 1.5372 -0.1068 -5.0596 41 1 2.6934 -2.7230 -5.6463 42 1 4.0424 -0.1487 -6.5796 43 1 4.6939 -1.2709 -5.3604 44 1 4.7973 -3.0753 -7.0158 45 1 5.6470 -1.6482 -7.6629 46 1 7.2188 -2.8720 -9.6241 47 1 2.2899 -3.4485 -8.0416 48 1 1.7974 -2.2229 -9.2366 49 1 0.7700 -1.8551 -6.9657 50 1 1.7712 -0.4867 -7.5083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = -109.210567 kcal Electronic energy + Delta-G solvation = -31148.018760 eV Core-core repulsion = 26982.206343 eV Total energy + Delta-G solvation = -4165.812417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00078 -40.59963 -39.05427 -38.53675 -37.13082 -36.12324 -33.95718 -33.06100 -32.23940 -31.83510 -31.28768 -27.66887 -27.45963 -26.31537 -25.57656 -23.95991 -23.68845 -22.74403 -21.67741 -21.12861 -19.84790 -18.86557 -18.44683 -18.06349 -17.77704 -17.31022 -17.00703 -16.65738 -16.41414 -15.85041 -15.48485 -15.37989 -15.30157 -15.16971 -14.80699 -14.70029 -14.34439 -14.25537 -14.11493 -13.85644 -13.45955 -13.34855 -13.23473 -13.06447 -13.02068 -12.76262 -12.62249 -12.57594 -12.48041 -12.14788 -12.04661 -11.92818 -11.85488 -11.67676 -11.59372 -11.53638 -11.39652 -10.81226 -10.60435 -10.37825 -10.16739 -9.68116 -8.73090 -7.88504 -5.33884 0.47008 1.28611 1.46564 1.48541 1.59121 2.24561 2.48763 2.51086 3.26156 3.27787 3.32812 3.62368 3.65902 3.75385 3.81217 4.00094 4.00664 4.18667 4.21804 4.26779 4.43321 4.44187 4.47095 4.56389 4.62769 4.66526 4.71242 4.79164 4.85779 4.91345 4.93258 4.97215 5.01779 5.03224 5.09190 5.10914 5.24572 5.27769 5.28744 5.37621 5.44257 5.50685 5.63195 5.68280 6.11098 6.36922 6.37932 6.79173 6.96413 7.06476 7.12633 7.83190 8.35482 9.18813 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.002440 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.466676 B =11471.273877 C =11668.575850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 C 0.066 3.934 4 O -0.562 6.562 5 C -0.113 4.113 6 C -0.124 4.124 7 C 0.089 3.911 8 N -0.586 5.586 9 C 0.515 3.485 10 O -0.496 6.496 11 C 0.500 3.500 12 O -0.543 6.543 13 N -0.684 5.684 14 C 0.161 3.839 15 C -0.131 4.131 16 C 0.184 3.816 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.144 3.856 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.379 0.621 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.416 0.584 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.050 0.950 44 H -0.005 1.005 45 H 0.057 0.943 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 6.675 25.620 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 C -0.012 4.012 4 O -0.367 6.367 5 C -0.151 4.151 6 C -0.162 4.162 7 C -0.033 4.033 8 N -0.321 5.321 9 C 0.296 3.704 10 O -0.370 6.370 11 C 0.281 3.719 12 O -0.421 6.421 13 N -0.336 5.336 14 C 0.057 3.943 15 C -0.171 4.171 16 C 0.058 3.942 17 N -0.334 5.334 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.018 3.982 27 C -0.164 4.164 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.226 0.774 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.014 0.986 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.393 5.922 25.411 28.471 hybrid contribution 1.062 0.942 -1.101 1.796 sum -10.332 6.864 24.311 27.292 Atomic orbital electron populations 1.22015 0.93477 1.01905 1.03139 1.21533 0.95341 0.91225 0.85096 1.22656 0.97008 0.92004 0.89575 1.86934 1.75835 1.29128 1.44846 1.22741 1.03308 0.94504 0.94536 1.22833 1.02923 0.97103 0.93374 1.22734 0.94556 0.88831 0.97200 1.48421 1.49480 1.30429 1.03786 1.19603 0.82579 0.84928 0.83254 1.90786 1.36732 1.26706 1.82798 1.20543 0.81477 0.85009 0.84833 1.90699 1.38328 1.29176 1.83907 1.45944 1.50899 1.32382 1.04390 1.20862 0.92946 0.94662 0.85781 1.22324 0.96095 1.00326 0.98354 1.20468 0.93927 0.94571 0.85262 1.44365 1.05430 1.78885 1.04688 1.19586 0.94677 1.32944 0.91889 0.90989 1.25836 0.99000 0.98866 1.01147 1.70199 1.07939 1.36827 1.43294 0.85202 0.78216 0.77998 0.78998 1.18825 1.21886 1.21945 1.21014 0.85026 0.95265 0.96914 1.22176 0.98675 1.01910 0.93649 0.89535 0.93281 0.92663 0.90359 0.93998 0.77373 0.87091 0.88741 0.87302 0.90219 0.91449 0.90185 0.74718 0.91139 0.92373 0.93175 0.98642 0.92477 0.94124 0.96491 0.91326 0.89097 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.22 71.98 0.59 -1.96 16 2 C 0.15 2.53 0.79 3.95 0.00 2.53 16 3 C 0.07 1.05 5.99 71.98 0.43 1.48 16 4 O -0.56 -12.05 9.42 -125.64 -1.18 -13.24 16 5 C -0.11 -1.02 6.02 31.78 0.19 -0.83 16 6 C -0.12 -1.38 7.08 31.99 0.23 -1.16 16 7 C 0.09 1.78 6.06 86.85 0.53 2.30 16 8 N -0.59 -13.57 2.82 -766.70 -2.16 -15.73 16 9 C 0.51 14.99 7.38 87.27 0.64 15.64 16 10 O -0.50 -15.66 12.26 20.11 0.25 -15.41 16 11 C 0.50 16.06 7.82 87.27 0.68 16.74 16 12 O -0.54 -19.56 13.44 -3.25 -0.04 -19.61 16 13 N -0.68 -21.00 5.07 -443.75 -2.25 -23.25 16 14 C 0.16 5.66 2.41 45.01 0.11 5.77 16 15 C -0.13 -5.35 5.65 30.67 0.17 -5.18 16 16 C 0.18 9.29 5.31 86.36 0.46 9.75 16 17 N -0.61 -30.90 2.99 -699.11 -2.09 -32.99 16 18 C -0.26 -14.36 9.59 84.03 0.81 -13.56 16 19 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 20 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 21 N -0.94 -56.40 11.19 21.65 0.24 -56.16 16 22 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 C 0.14 5.84 6.51 86.36 0.56 6.40 16 27 C -0.12 -4.04 5.55 30.67 0.17 -3.87 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.20 6.32 -2.38 -0.02 1.18 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.38 5.29 9.12 -74.06 -0.68 4.61 16 34 H 0.11 0.53 7.83 -2.38 -0.02 0.51 16 35 H 0.09 0.62 7.85 -2.38 -0.02 0.60 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.98 6.16 -2.39 -0.01 1.96 16 40 H 0.42 11.43 8.07 -92.71 -0.75 10.68 16 41 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.06 3.25 6.04 -2.38 -0.01 3.23 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 2.64 7.94 -2.39 -0.02 2.63 16 49 H 0.09 2.40 8.14 -2.38 -0.02 2.39 16 50 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.38 386.35 0.31 -73.07 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.47 Total: 24.59 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 5.99 Total: 31.47 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.26 Total: -128.13 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.98 Total: -48.26 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.38 0.31 -73.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.142 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds