Wall clock time and date at job start Sat Apr 11 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.99289 * 2 1 4 4 O 1.42904 * 109.47303 * 64.64068 * 3 2 1 5 5 C 1.54310 * 109.98799 * 238.97228 * 2 1 3 6 6 C 1.55161 * 102.86271 * 263.04306 * 5 2 1 7 7 C 1.54905 * 101.58183 * 324.30796 * 6 5 2 8 8 N 1.47019 * 109.88133 * 121.09063 * 2 1 3 9 9 C 1.34781 * 125.65182 * 300.51845 * 8 2 1 10 10 O 1.21349 * 119.99888 * 359.71600 * 9 8 2 11 11 C 1.49446 * 119.99875 * 179.71673 * 9 8 2 12 12 O 1.21349 * 120.00236 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99875 * 180.02562 * 11 9 8 14 14 C 1.46499 * 119.99985 * 179.97438 * 13 11 9 15 15 C 1.53046 * 109.45791 * 204.99746 * 14 13 11 16 16 C 1.53187 * 109.31183 * 178.61385 * 15 14 13 17 17 N 1.46927 * 108.77406 * 54.63732 * 16 15 14 18 18 C 1.36943 * 120.63120 * 126.36883 * 17 16 15 19 19 H 1.08000 * 119.99888 * 332.45081 * 18 17 16 20 20 C 1.38811 * 119.99955 * 152.45061 * 18 17 16 21 21 N 1.31614 * 120.00254 * 342.76805 * 20 18 17 22 22 Si 1.86801 * 119.99678 * 162.77313 * 20 18 17 23 23 H 1.48501 * 109.46669 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46948 * 299.99298 * 22 20 18 25 25 H 1.48498 * 109.47140 * 59.99949 * 22 20 18 26 26 C 1.46923 * 118.73893 * 306.64252 * 17 16 15 27 27 C 1.52755 * 109.00900 * 53.31139 * 26 17 16 28 28 H 1.08997 * 109.47349 * 300.35580 * 1 2 3 29 29 H 1.09001 * 109.47052 * 60.36112 * 1 2 3 30 30 H 1.09007 * 109.46634 * 180.35747 * 1 2 3 31 31 H 1.08999 * 109.46715 * 184.63710 * 3 2 1 32 32 H 1.08997 * 109.46997 * 304.63497 * 3 2 1 33 33 H 0.96694 * 114.00002 * 180.02562 * 4 3 2 34 34 H 1.08999 * 110.92188 * 144.63091 * 5 2 1 35 35 H 1.08994 * 110.74478 * 21.37642 * 5 2 1 36 36 H 1.08998 * 111.00502 * 206.22730 * 6 5 2 37 37 H 1.08997 * 111.00139 * 82.37935 * 6 5 2 38 38 H 1.09001 * 110.36457 * 278.17039 * 7 6 5 39 39 H 1.08996 * 110.37228 * 155.84687 * 7 6 5 40 40 H 0.97006 * 119.99849 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.45141 * 324.96616 * 14 13 11 42 42 H 1.09004 * 109.49497 * 58.66620 * 15 14 13 43 43 H 1.08995 * 109.52949 * 298.58526 * 15 14 13 44 44 H 1.09004 * 109.59162 * 294.84964 * 16 15 14 45 45 H 1.08999 * 109.58850 * 174.42634 * 16 15 14 46 46 H 0.96995 * 120.00322 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.58782 * 173.14413 * 26 17 16 48 48 H 1.09006 * 109.58879 * 293.56697 * 26 17 16 49 49 H 1.09007 * 109.56573 * 185.55521 * 27 26 17 50 50 H 1.09002 * 109.36461 * 65.49364 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.6738 2.0828 1.2175 5 6 2.0575 -0.7475 -1.2427 6 6 2.3478 -2.1692 -0.6932 7 6 2.8524 -1.8529 0.7368 8 7 2.0300 -0.7139 1.1840 9 6 1.7742 -0.3852 2.4658 10 8 1.0803 0.5778 2.7182 11 6 2.3450 -1.2066 3.5761 12 8 3.0385 -2.1698 3.3236 13 7 2.0887 -0.8781 4.8579 14 6 2.6479 -1.6836 5.9463 15 6 1.7714 -1.5358 7.1922 16 6 2.3394 -2.4063 8.3175 17 7 3.7494 -2.0492 8.5257 18 6 4.2050 -1.7030 9.7698 19 1 3.5303 -1.2620 10.4886 20 6 5.5341 -1.9189 10.1071 21 7 6.2687 -2.7444 9.3922 22 14 6.2800 -1.0378 11.5757 23 1 7.7026 -1.4375 11.7225 24 1 6.1968 0.4301 11.3668 25 1 5.5334 -1.4060 12.8054 26 6 4.6598 -2.0647 7.3726 27 6 4.0670 -1.2034 6.2590 28 1 -0.3634 0.5193 0.8867 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3633 -1.0277 0.0064 31 1 3.1400 1.4290 -0.0831 32 1 1.6285 1.9789 -0.8455 33 1 1.9723 3.0000 1.2863 34 1 2.9708 -0.2847 -1.6167 35 1 1.2975 -0.7834 -2.0231 36 1 3.1214 -2.6644 -1.2799 37 1 1.4384 -2.7694 -0.6627 38 1 3.9059 -1.5744 0.7143 39 1 2.6999 -2.7110 1.3914 40 1 1.5341 -0.1083 5.0597 41 1 2.6770 -2.7307 5.6450 42 1 0.7552 -1.8560 6.9622 43 1 1.7612 -0.4929 7.5089 44 1 2.2661 -3.4575 8.0388 45 1 1.7783 -2.2294 9.2350 46 1 7.1974 -2.8956 9.6281 47 1 5.6292 -1.6624 7.6670 48 1 4.7795 -3.0875 7.0153 49 1 4.6846 -1.2871 5.3648 50 1 4.0357 -0.1634 6.5842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:50 Heat of formation + Delta-G solvation = -85.292428 kcal Electronic energy + Delta-G solvation = -31168.172863 eV Core-core repulsion = 27003.397615 eV Total energy + Delta-G solvation = -4164.775248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95635 -39.43414 -37.67757 -37.22756 -36.33593 -34.49944 -32.30866 -32.05716 -31.49940 -30.11636 -29.51006 -26.95089 -25.95868 -25.28416 -24.24751 -22.40889 -22.23886 -21.68738 -20.50434 -19.57905 -18.68703 -17.64597 -17.24192 -16.75764 -16.66310 -16.34028 -15.59997 -15.40943 -14.82357 -14.73889 -14.43877 -14.04840 -13.90606 -13.67760 -13.59870 -13.50842 -13.03665 -12.99038 -12.76801 -12.62732 -12.52361 -12.41121 -12.23973 -11.91070 -11.69460 -11.47597 -11.16690 -11.09975 -10.98206 -10.93686 -10.80930 -10.70777 -10.39380 -10.25863 -10.09679 -10.06557 -9.75891 -9.67534 -9.13234 -8.82326 -8.69126 -8.41992 -6.68504 -5.77734 -3.20248 1.69581 2.37908 3.39687 3.45593 3.45840 3.46820 3.58884 3.90945 4.16764 4.38882 4.50624 4.57885 4.67326 4.81430 4.89044 5.05686 5.09648 5.24191 5.28348 5.31847 5.36651 5.40500 5.45867 5.54134 5.59218 5.60730 5.69055 5.77696 5.81953 5.86538 6.02757 6.07025 6.23889 6.26668 6.31774 6.42796 6.57773 6.65951 6.75806 6.84148 6.93544 7.24151 7.37196 7.52343 7.55353 7.67942 7.80420 7.97401 8.26504 8.45755 9.21762 9.85110 10.41451 11.31028 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.002444 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.332404 B =11452.827590 C =11639.214805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 C 0.068 3.932 4 O -0.532 6.532 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.096 3.904 8 N -0.588 5.588 9 C 0.518 3.482 10 O -0.478 6.478 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.692 5.692 14 C 0.150 3.850 15 C -0.140 4.140 16 C 0.150 3.850 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.174 3.826 27 C -0.147 4.147 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.365 0.635 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.407 0.593 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 5.580 -23.652 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 C -0.011 4.011 4 O -0.335 6.335 5 C -0.162 4.162 6 C -0.173 4.173 7 C -0.026 4.026 8 N -0.325 5.325 9 C 0.300 3.700 10 O -0.350 6.350 11 C 0.284 3.716 12 O -0.400 6.400 13 N -0.344 5.344 14 C 0.047 3.953 15 C -0.180 4.180 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.216 1.216 24 H -0.210 1.210 25 H -0.209 1.209 26 C 0.048 3.952 27 C -0.187 4.187 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.210 0.790 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.896 4.790 -23.399 25.853 hybrid contribution 0.602 1.372 0.534 1.590 sum -9.294 6.162 -22.865 25.440 Atomic orbital electron populations 1.22101 0.93408 1.02226 1.03481 1.21107 0.95167 0.90605 0.85081 1.22559 0.97768 0.92650 0.88116 1.87035 1.80107 1.29126 1.37260 1.22692 1.01968 0.95830 0.95669 1.22848 1.02264 0.96306 0.95840 1.22634 0.94724 0.90060 0.95208 1.48238 1.50365 1.29964 1.03897 1.19896 0.82336 0.85163 0.82584 1.90776 1.35970 1.25929 1.82351 1.20116 0.81860 0.85219 0.84377 1.90698 1.37652 1.28124 1.83524 1.46168 1.51246 1.32078 1.04863 1.21193 0.94212 0.95241 0.84669 1.22362 0.97605 1.02284 0.95750 1.20839 0.87138 0.94759 0.95037 1.44089 1.03619 1.78719 1.05098 1.19140 0.94458 1.33853 0.90989 0.91643 1.25045 0.98422 0.97892 0.98238 1.70022 1.08145 1.35062 1.41355 0.86366 0.78184 0.79693 0.82494 1.21645 1.21041 1.20872 1.20669 0.94823 0.95557 0.84162 1.22513 0.94595 1.01361 1.00216 0.90108 0.91986 0.92531 0.93926 0.93198 0.78978 0.90261 0.89573 0.89536 0.90477 0.91215 0.87940 0.75817 0.89706 0.92425 0.91603 0.96110 0.92206 0.93531 0.89171 0.96122 0.92796 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.28 37.16 0.31 -1.16 16 2 C 0.17 1.56 0.79 -130.85 -0.10 1.45 16 3 C 0.07 0.61 6.03 37.16 0.22 0.84 16 4 O -0.53 -6.05 9.34 -59.94 -0.56 -6.61 16 5 C -0.12 -0.79 6.01 -24.90 -0.15 -0.93 16 6 C -0.13 -0.93 7.08 -24.58 -0.17 -1.11 16 7 C 0.10 1.01 6.06 -2.53 -0.02 0.99 16 8 N -0.59 -7.10 2.82 -156.32 -0.44 -7.54 16 9 C 0.52 7.64 7.29 -11.58 -0.08 7.55 16 10 O -0.48 -7.62 12.14 -19.22 -0.23 -7.85 16 11 C 0.50 8.12 7.82 -11.58 -0.09 8.03 16 12 O -0.52 -9.30 13.44 5.50 0.07 -9.23 16 13 N -0.69 -10.88 5.07 -54.19 -0.27 -11.15 16 14 C 0.15 2.66 2.42 -67.88 -0.16 2.50 16 15 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 16 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 17 N -0.59 -14.84 3.00 -172.58 -0.52 -15.36 16 18 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 22 Si 0.90 21.74 29.59 -169.99 -5.03 16.72 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.17 4.24 5.28 -3.94 -0.02 4.22 16 27 C -0.15 -2.96 5.63 -26.83 -0.15 -3.11 16 28 H 0.08 1.01 6.46 -51.93 -0.34 0.67 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.36 2.77 9.12 45.56 0.42 3.18 16 34 H 0.08 0.43 7.80 -51.93 -0.40 0.02 16 35 H 0.09 0.41 7.84 -51.93 -0.41 0.01 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.26 6.15 -51.93 -0.32 0.94 16 40 H 0.41 5.85 8.07 -40.82 -0.33 5.52 16 41 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 50 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -32.88 386.12 -8.91 -41.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.54 Total: 6.48 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -0.82 Total: 12.65 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.61 Total: -59.76 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.72 Total: -23.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -8.91 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.501 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds