Wall clock time and date at job start Sat Apr 11 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.99289 * 2 1 4 4 O 1.42904 * 109.47303 * 64.64068 * 3 2 1 5 5 C 1.54310 * 109.98799 * 238.97228 * 2 1 3 6 6 C 1.55161 * 102.86271 * 263.04306 * 5 2 1 7 7 C 1.54905 * 101.58183 * 324.30796 * 6 5 2 8 8 N 1.47019 * 109.88133 * 121.09063 * 2 1 3 9 9 C 1.34781 * 125.65182 * 300.51845 * 8 2 1 10 10 O 1.21349 * 119.99888 * 359.71600 * 9 8 2 11 11 C 1.49446 * 119.99875 * 179.71673 * 9 8 2 12 12 O 1.21349 * 120.00236 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99875 * 180.02562 * 11 9 8 14 14 C 1.46499 * 119.99985 * 179.97438 * 13 11 9 15 15 C 1.53046 * 109.45791 * 204.99746 * 14 13 11 16 16 C 1.53187 * 109.31183 * 178.61385 * 15 14 13 17 17 N 1.46927 * 108.77406 * 54.63732 * 16 15 14 18 18 C 1.36943 * 120.63120 * 126.36883 * 17 16 15 19 19 H 1.08000 * 119.99888 * 332.45081 * 18 17 16 20 20 C 1.38811 * 119.99955 * 152.45061 * 18 17 16 21 21 N 1.31614 * 120.00254 * 342.76805 * 20 18 17 22 22 Si 1.86801 * 119.99678 * 162.77313 * 20 18 17 23 23 H 1.48501 * 109.46669 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46948 * 299.99298 * 22 20 18 25 25 H 1.48498 * 109.47140 * 59.99949 * 22 20 18 26 26 C 1.46923 * 118.73893 * 306.64252 * 17 16 15 27 27 C 1.52755 * 109.00900 * 53.31139 * 26 17 16 28 28 H 1.08997 * 109.47349 * 300.35580 * 1 2 3 29 29 H 1.09001 * 109.47052 * 60.36112 * 1 2 3 30 30 H 1.09007 * 109.46634 * 180.35747 * 1 2 3 31 31 H 1.08999 * 109.46715 * 184.63710 * 3 2 1 32 32 H 1.08997 * 109.46997 * 304.63497 * 3 2 1 33 33 H 0.96694 * 114.00002 * 180.02562 * 4 3 2 34 34 H 1.08999 * 110.92188 * 144.63091 * 5 2 1 35 35 H 1.08994 * 110.74478 * 21.37642 * 5 2 1 36 36 H 1.08998 * 111.00502 * 206.22730 * 6 5 2 37 37 H 1.08997 * 111.00139 * 82.37935 * 6 5 2 38 38 H 1.09001 * 110.36457 * 278.17039 * 7 6 5 39 39 H 1.08996 * 110.37228 * 155.84687 * 7 6 5 40 40 H 0.97006 * 119.99849 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.45141 * 324.96616 * 14 13 11 42 42 H 1.09004 * 109.49497 * 58.66620 * 15 14 13 43 43 H 1.08995 * 109.52949 * 298.58526 * 15 14 13 44 44 H 1.09004 * 109.59162 * 294.84964 * 16 15 14 45 45 H 1.08999 * 109.58850 * 174.42634 * 16 15 14 46 46 H 0.96995 * 120.00322 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.58782 * 173.14413 * 26 17 16 48 48 H 1.09006 * 109.58879 * 293.56697 * 26 17 16 49 49 H 1.09007 * 109.56573 * 185.55521 * 27 26 17 50 50 H 1.09002 * 109.36461 * 65.49364 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.6738 2.0828 1.2175 5 6 2.0575 -0.7475 -1.2427 6 6 2.3478 -2.1692 -0.6932 7 6 2.8524 -1.8529 0.7368 8 7 2.0300 -0.7139 1.1840 9 6 1.7742 -0.3852 2.4658 10 8 1.0803 0.5778 2.7182 11 6 2.3450 -1.2066 3.5761 12 8 3.0385 -2.1698 3.3236 13 7 2.0887 -0.8781 4.8579 14 6 2.6479 -1.6836 5.9463 15 6 1.7714 -1.5358 7.1922 16 6 2.3394 -2.4063 8.3175 17 7 3.7494 -2.0492 8.5257 18 6 4.2050 -1.7030 9.7698 19 1 3.5303 -1.2620 10.4886 20 6 5.5341 -1.9189 10.1071 21 7 6.2687 -2.7444 9.3922 22 14 6.2800 -1.0378 11.5757 23 1 7.7026 -1.4375 11.7225 24 1 6.1968 0.4301 11.3668 25 1 5.5334 -1.4060 12.8054 26 6 4.6598 -2.0647 7.3726 27 6 4.0670 -1.2034 6.2590 28 1 -0.3634 0.5193 0.8867 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3633 -1.0277 0.0064 31 1 3.1400 1.4290 -0.0831 32 1 1.6285 1.9789 -0.8455 33 1 1.9723 3.0000 1.2863 34 1 2.9708 -0.2847 -1.6167 35 1 1.2975 -0.7834 -2.0231 36 1 3.1214 -2.6644 -1.2799 37 1 1.4384 -2.7694 -0.6627 38 1 3.9059 -1.5744 0.7143 39 1 2.6999 -2.7110 1.3914 40 1 1.5341 -0.1083 5.0597 41 1 2.6770 -2.7307 5.6450 42 1 0.7552 -1.8560 6.9622 43 1 1.7612 -0.4929 7.5089 44 1 2.2661 -3.4575 8.0388 45 1 1.7783 -2.2294 9.2350 46 1 7.1974 -2.8956 9.6281 47 1 5.6292 -1.6624 7.6670 48 1 4.7795 -3.0875 7.0153 49 1 4.6846 -1.2871 5.3648 50 1 4.0357 -0.1634 6.5842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:49 Heat of formation + Delta-G solvation = -108.458483 kcal Electronic energy + Delta-G solvation = -31169.177418 eV Core-core repulsion = 27003.397615 eV Total energy + Delta-G solvation = -4165.779804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99374 -40.60045 -39.05782 -38.52158 -37.11859 -36.11895 -33.95667 -33.07105 -32.23954 -31.86042 -31.28615 -27.64992 -27.45332 -26.30865 -25.58160 -23.95293 -23.69064 -22.74024 -21.67562 -21.12211 -19.84277 -18.86362 -18.45416 -18.04300 -17.78838 -17.28882 -17.00409 -16.66128 -16.40705 -15.84698 -15.47273 -15.38448 -15.31331 -15.18147 -14.79710 -14.68679 -14.34690 -14.25560 -14.11007 -13.85242 -13.44970 -13.32324 -13.23568 -13.04541 -13.02803 -12.76502 -12.60946 -12.57673 -12.47745 -12.15553 -12.09358 -11.92029 -11.85474 -11.66429 -11.59177 -11.54465 -11.40270 -10.80475 -10.58624 -10.36737 -10.16098 -9.66198 -8.72653 -7.88176 -5.33710 0.48277 1.29445 1.47537 1.50280 1.56867 2.26004 2.49541 2.51503 3.26660 3.28408 3.33316 3.62347 3.66157 3.76184 3.81223 3.98703 4.00335 4.19214 4.22822 4.26763 4.43280 4.45144 4.46755 4.57198 4.63441 4.66995 4.71590 4.79476 4.85901 4.90872 4.93510 4.97263 5.01706 5.03060 5.09075 5.10838 5.24320 5.27777 5.28822 5.37603 5.44515 5.50009 5.62931 5.68165 6.11858 6.37720 6.38606 6.80183 6.96432 7.07959 7.12890 7.83521 8.35832 9.19034 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.002444 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.332404 B =11452.827590 C =11639.214805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 C 0.065 3.935 4 O -0.561 6.561 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.089 3.911 8 N -0.585 5.585 9 C 0.516 3.484 10 O -0.494 6.494 11 C 0.500 3.500 12 O -0.544 6.544 13 N -0.684 5.684 14 C 0.161 3.839 15 C -0.125 4.125 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.296 1.296 24 H -0.278 1.278 25 H -0.273 1.273 26 C 0.184 3.816 27 C -0.131 4.131 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.377 0.623 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.416 0.584 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.250 0.750 47 H 0.057 0.943 48 H -0.005 1.005 49 H 0.050 0.950 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 6.724 -25.612 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.068 3.932 3 C -0.014 4.014 4 O -0.366 6.366 5 C -0.151 4.151 6 C -0.162 4.162 7 C -0.033 4.033 8 N -0.321 5.321 9 C 0.298 3.702 10 O -0.368 6.368 11 C 0.281 3.719 12 O -0.422 6.422 13 N -0.336 5.336 14 C 0.058 3.942 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.222 1.222 24 H -0.204 1.204 25 H -0.199 1.199 26 C 0.058 3.942 27 C -0.171 4.171 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.225 0.775 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.013 0.987 49 H 0.068 0.932 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.364 5.954 -25.397 28.454 hybrid contribution 1.023 0.972 1.087 1.781 sum -10.341 6.927 -24.310 27.311 Atomic orbital electron populations 1.22040 0.93467 1.02034 1.03098 1.21531 0.95274 0.91250 0.85130 1.22697 0.98026 0.92429 0.88219 1.86992 1.80565 1.30368 1.38704 1.22737 1.03307 0.94512 0.94557 1.22835 1.02925 0.97110 0.93367 1.22722 0.94622 0.88796 0.97198 1.48376 1.49621 1.30286 1.03772 1.19564 0.82554 0.84913 0.83213 1.90773 1.36863 1.26454 1.82722 1.20558 0.81395 0.85064 0.84841 1.90697 1.38503 1.29040 1.83915 1.45944 1.51176 1.32110 1.04392 1.20861 0.92977 0.94616 0.85792 1.22178 0.98692 1.01884 0.93672 1.21021 0.84990 0.95295 0.96893 1.44336 1.05320 1.79120 1.04581 1.19524 0.94826 1.33196 0.91850 0.91007 1.25838 0.98980 0.98779 1.01167 1.70186 1.08034 1.36756 1.43264 0.85324 0.76885 0.78552 0.79592 1.22209 1.20438 1.19859 1.20374 0.93958 0.94575 0.85314 1.22255 0.96139 1.00349 0.98357 0.93369 0.89450 0.92560 0.93766 0.90543 0.77532 0.88765 0.87093 0.87329 0.90204 0.91520 0.90214 0.74721 0.91133 0.89082 0.90970 0.96458 0.91331 0.94103 0.92503 0.98703 0.93152 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.28 71.98 0.60 -1.93 16 2 C 0.15 2.53 0.79 3.95 0.00 2.53 16 3 C 0.07 1.02 6.03 71.98 0.43 1.46 16 4 O -0.56 -12.18 9.34 -125.35 -1.17 -13.35 16 5 C -0.11 -1.03 6.01 31.78 0.19 -0.84 16 6 C -0.12 -1.39 7.08 31.99 0.23 -1.17 16 7 C 0.09 1.79 6.06 86.85 0.53 2.31 16 8 N -0.58 -13.60 2.82 -766.83 -2.16 -15.76 16 9 C 0.52 15.07 7.29 87.27 0.64 15.71 16 10 O -0.49 -15.60 12.14 20.39 0.25 -15.35 16 11 C 0.50 16.13 7.82 87.27 0.68 16.81 16 12 O -0.54 -19.67 13.44 -3.24 -0.04 -19.71 16 13 N -0.68 -21.09 5.07 -443.73 -2.25 -23.34 16 14 C 0.16 5.69 2.42 45.02 0.11 5.79 16 15 C -0.12 -4.06 5.55 30.67 0.17 -3.89 16 16 C 0.14 5.86 6.52 86.36 0.56 6.42 16 17 N -0.61 -30.98 3.00 -699.93 -2.10 -33.08 16 18 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 19 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 20 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 21 N -0.94 -56.50 11.19 21.65 0.24 -56.25 16 22 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.18 9.32 5.28 86.22 0.46 9.77 16 27 C -0.13 -5.37 5.63 30.53 0.17 -5.20 16 28 H 0.05 1.16 6.46 -2.39 -0.02 1.14 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.04 0.67 8.06 -2.39 -0.02 0.65 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.38 5.40 9.12 -74.06 -0.68 4.72 16 34 H 0.09 0.62 7.80 -2.39 -0.02 0.61 16 35 H 0.11 0.53 7.84 -2.39 -0.02 0.51 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.98 6.15 -2.39 -0.01 1.97 16 40 H 0.42 11.47 8.07 -92.70 -0.75 10.72 16 41 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 42 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 46 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.06 3.24 6.04 -2.38 -0.01 3.22 16 48 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 49 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -73.41 386.12 0.31 -73.10 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.47 Total: 25.00 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: 5.99 Total: 31.49 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.27 Total: -128.43 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.97 Total: -48.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.41 0.31 -73.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.363 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds