Wall clock time and date at job start Sat Apr 11 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.87021 * 2 1 4 4 N 1.46503 * 109.46667 * 59.29735 * 3 2 1 5 5 C 1.34776 * 119.99203 * 180.02562 * 4 3 2 6 6 O 1.21348 * 120.00910 * 0.02562 * 5 4 3 7 7 C 1.49462 * 119.99727 * 180.02562 * 5 4 3 8 8 O 1.21348 * 119.99363 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99854 * 179.97438 * 7 5 4 10 10 C 1.46503 * 119.99329 * 179.97438 * 9 7 5 11 11 C 1.53050 * 109.45359 * 205.00296 * 10 9 7 12 12 C 1.53193 * 109.30889 * 178.61605 * 11 10 9 13 13 N 1.46930 * 108.77569 * 54.63292 * 12 11 10 14 14 C 1.36932 * 120.62864 * 126.36387 * 13 12 11 15 15 H 1.08006 * 120.00154 * 332.73161 * 14 13 12 16 16 C 1.38813 * 119.99981 * 152.45065 * 14 13 12 17 17 N 1.31626 * 120.00015 * 342.77441 * 16 14 13 18 18 Si 1.86804 * 120.00120 * 162.77216 * 16 14 13 19 19 H 1.48499 * 109.46834 * 60.00557 * 18 16 14 20 20 H 1.48497 * 109.46993 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47049 * 300.00305 * 18 16 14 22 22 C 1.46923 * 118.73972 * 306.64751 * 13 12 11 23 23 C 1.52761 * 109.01099 * 53.30603 * 22 13 12 24 24 C 1.54096 * 109.87951 * 238.99273 * 2 1 3 25 25 C 1.54811 * 104.19169 * 242.45271 * 24 2 1 26 26 C 1.55005 * 102.08851 * 20.88180 * 25 24 2 27 27 O 1.43745 * 109.87911 * 121.00467 * 2 1 3 28 28 H 1.08997 * 109.47145 * 60.70661 * 1 2 3 29 29 H 1.09004 * 109.46884 * 180.70276 * 1 2 3 30 30 H 1.08993 * 109.47226 * 300.69826 * 1 2 3 31 31 H 1.09006 * 109.46607 * 299.30027 * 3 2 1 32 32 H 1.08999 * 109.47108 * 179.29874 * 3 2 1 33 33 H 0.96992 * 120.00658 * 0.02562 * 4 3 2 34 34 H 0.96995 * 119.99963 * 0.02562 * 9 7 5 35 35 H 1.08994 * 109.45186 * 324.96769 * 10 9 7 36 36 H 1.08997 * 109.49679 * 58.66754 * 11 10 9 37 37 H 1.08994 * 109.52743 * 298.58149 * 11 10 9 38 38 H 1.09004 * 109.58706 * 294.85016 * 12 11 10 39 39 H 1.08999 * 109.58748 * 174.42335 * 12 11 10 40 40 H 0.96994 * 119.99759 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58795 * 173.14114 * 22 13 12 42 42 H 1.09009 * 109.58495 * 293.56354 * 22 13 12 43 43 H 1.08998 * 109.56147 * 185.55821 * 23 22 13 44 44 H 1.08993 * 109.38655 * 65.51753 * 23 22 13 45 45 H 1.08996 * 110.48778 * 1.13037 * 24 2 1 46 46 H 1.09004 * 110.48865 * 123.64440 * 24 2 1 47 47 H 1.08999 * 110.91086 * 139.07773 * 25 24 2 48 48 H 1.09004 * 110.90745 * 262.65224 * 25 24 2 49 49 H 1.08992 * 110.61473 * 81.47671 * 26 25 24 50 50 H 1.09000 * 110.61499 * 204.32388 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 7 1.5527 2.1378 1.1877 5 6 1.8845 3.4269 1.3991 6 8 2.5946 4.0088 0.6056 7 6 1.3776 4.1398 2.6110 8 8 0.6679 3.5578 3.4047 9 7 1.7098 5.4288 2.8227 10 6 1.2125 6.1276 4.0104 11 6 1.1746 7.6331 3.7374 12 6 0.6217 8.3575 4.9688 13 7 1.4221 7.9765 6.1406 14 6 1.9932 8.9334 6.9364 15 1 2.2500 9.8973 6.5223 16 6 2.2367 8.6667 8.2767 17 7 1.6316 7.6581 8.8675 18 14 3.4233 9.7390 9.2419 19 1 2.9374 11.1423 9.2380 20 1 3.5074 9.2488 10.6411 21 1 4.7676 9.6788 8.6140 22 6 1.6032 6.5493 6.4387 23 6 2.1405 5.8453 5.1940 24 6 2.0540 -0.7465 -1.2421 25 6 2.8358 -1.9493 -0.6602 26 6 2.2334 -2.0702 0.7629 27 8 2.0188 -0.6963 1.1587 28 1 -0.3633 0.5028 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8836 31 1 1.7005 1.9515 -0.8963 32 1 3.1399 1.4314 0.0126 33 1 0.9848 1.6729 1.8218 34 1 2.2774 5.8938 2.1884 35 1 0.2078 5.7757 4.2445 36 1 0.5319 7.8313 2.8797 37 1 2.1825 7.9907 3.5271 38 1 -0.4175 8.0687 5.1266 39 1 0.6848 9.4351 4.8178 40 1 1.8020 7.4715 9.8039 41 1 2.3137 6.4343 7.2572 42 1 0.6457 6.1101 6.7189 43 1 2.1852 4.7710 5.3730 44 1 3.1397 6.2187 4.9701 45 1 1.2237 -1.0929 -1.8574 46 1 2.7158 -0.1037 -1.8226 47 1 2.6478 -2.8529 -1.2402 48 1 3.9034 -1.7339 -0.6142 49 1 1.2879 -2.6116 0.7347 50 1 2.9358 -2.5613 1.4365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588127810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:58 Heat of formation + Delta-G solvation = -99.502606 kcal Electronic energy + Delta-G solvation = -29906.459481 eV Core-core repulsion = 25741.068033 eV Total energy + Delta-G solvation = -4165.391448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84288 -40.13591 -38.65074 -37.28384 -35.49377 -34.39521 -32.84188 -32.12212 -31.66465 -30.13419 -29.53880 -27.76970 -26.50674 -25.24676 -23.65930 -22.30456 -22.23719 -21.54578 -20.72022 -20.15603 -19.49376 -18.38202 -17.08644 -16.77108 -16.53878 -16.26522 -16.07349 -15.52788 -15.32620 -15.02385 -14.67036 -14.37912 -14.16124 -13.94118 -13.73336 -13.51595 -13.42121 -13.03417 -12.99188 -12.89351 -12.54515 -12.41841 -12.28863 -12.19664 -11.65603 -11.61912 -11.49512 -11.44276 -11.18953 -11.10743 -10.93225 -10.70547 -10.40790 -10.26235 -10.14538 -10.07860 -9.76635 -9.75089 -9.42506 -9.39439 -8.80871 -8.42439 -6.68680 -5.77413 -3.19900 1.49479 2.38178 3.26820 3.31800 3.40134 3.46138 3.47253 3.73801 3.96010 4.17396 4.25232 4.48542 4.50906 4.55521 4.57443 4.76340 5.01320 5.09830 5.16372 5.23338 5.26792 5.30116 5.32984 5.39845 5.40114 5.45009 5.47556 5.58578 5.59590 5.74600 5.80021 6.00293 6.05575 6.21757 6.26846 6.40480 6.45304 6.56339 6.65388 6.74108 6.78886 6.92809 7.00736 7.36955 7.48233 7.68111 7.78908 7.80671 8.13744 8.45831 9.21898 9.85223 10.41478 11.31308 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024371 B = 0.001986 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.617553 B =14095.394320 C =14545.254412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 C 0.129 3.871 4 N -0.696 5.696 5 C 0.508 3.492 6 O -0.526 6.526 7 C 0.503 3.497 8 O -0.521 6.521 9 N -0.691 5.691 10 C 0.148 3.852 11 C -0.140 4.140 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.174 3.826 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.362 6.362 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.407 0.593 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.062 0.938 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -18.865 -22.295 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 C 0.005 3.995 4 N -0.351 5.351 5 C 0.289 3.711 6 O -0.402 6.402 7 C 0.282 3.718 8 O -0.397 6.397 9 N -0.342 5.342 10 C 0.046 3.954 11 C -0.180 4.180 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.047 3.953 23 C -0.188 4.188 24 C -0.181 4.181 25 C -0.193 4.193 26 C -0.031 4.031 27 O -0.281 6.281 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.254 0.746 34 H 0.242 0.758 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.509 -18.796 -21.879 28.849 hybrid contribution 0.625 0.273 0.297 0.744 sum 0.115 -18.523 -21.582 28.441 Atomic orbital electron populations 1.22290 0.93998 1.02936 1.03221 1.22383 0.94411 0.91872 0.86540 1.21640 1.00082 0.89494 0.88273 1.45684 1.51921 1.11314 1.26140 1.20392 0.81233 0.82767 0.86746 1.90742 1.36441 1.66555 1.46444 1.19974 0.82062 0.83501 0.86223 1.90775 1.36675 1.66024 1.46210 1.46182 1.50748 1.10878 1.26426 1.21233 0.98877 0.91841 0.83478 1.22369 1.02013 0.93578 1.00049 1.20843 0.93402 0.97180 0.86385 1.44088 1.57298 1.01995 1.28121 1.19135 1.33580 0.96029 0.89689 0.91627 1.25056 0.99878 0.98514 0.96212 1.70029 1.42217 1.31369 1.10932 0.86360 0.81416 0.79982 0.78940 1.20890 1.21652 1.21037 1.20678 0.99108 0.82402 0.93084 1.22523 0.98972 1.00174 0.97127 1.22960 1.00847 0.97241 0.97088 1.23134 1.00931 0.98548 0.96664 1.23601 0.99998 0.84193 0.95336 1.89024 1.85854 1.20891 1.32326 0.91080 0.91712 0.91373 0.89730 0.90279 0.74574 0.75755 0.89580 0.92386 0.91564 0.96081 0.92176 0.93522 0.89108 0.96061 0.92682 0.92401 0.89882 0.89839 0.90011 0.90252 0.92019 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 8.44 37.16 0.31 -0.76 16 2 C 0.09 0.63 0.82 -90.04 -0.07 0.56 16 3 C 0.13 1.14 4.62 -4.04 -0.02 1.13 16 4 N -0.70 -7.89 5.17 -60.72 -0.31 -8.21 16 5 C 0.51 7.05 7.89 -11.58 -0.09 6.96 16 6 O -0.53 -8.04 16.48 5.50 0.09 -7.95 16 7 C 0.50 7.90 7.85 -11.58 -0.09 7.81 16 8 O -0.52 -9.39 16.14 5.50 0.09 -9.31 16 9 N -0.69 -10.59 5.07 -54.19 -0.27 -10.87 16 10 C 0.15 2.61 2.42 -67.88 -0.16 2.45 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 12 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 13 N -0.59 -14.79 3.00 -172.58 -0.52 -15.30 16 14 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 17 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 18 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.17 4.22 5.28 -3.93 -0.02 4.20 16 23 C -0.15 -2.98 5.64 -26.83 -0.15 -3.13 16 24 C -0.14 -0.70 6.27 -25.20 -0.16 -0.86 16 25 C -0.16 -0.72 7.16 -24.72 -0.18 -0.90 16 26 C 0.05 0.28 7.67 38.22 0.29 0.57 16 27 O -0.36 -3.31 10.71 -35.23 -0.38 -3.69 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.52 6.83 -51.93 -0.35 0.16 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.42 4.70 6.70 -40.82 -0.27 4.43 16 34 H 0.41 5.60 8.07 -40.82 -0.33 5.27 16 35 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 42 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 0.31 7.70 -51.93 -0.40 -0.09 16 46 H 0.08 0.37 7.70 -51.93 -0.40 -0.03 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -32.38 398.01 -8.80 -41.17 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.34 Total: 5.72 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -0.74 Total: 11.43 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.49 Total: -60.11 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.20 Total: -20.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.38 -8.80 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588127810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.328 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds