Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48506 * 109.47097 * 239.99957 * 3 2 1 5 5 H 1.48497 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47087 * 120.00217 * 3 2 1 7 7 C 1.37877 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99647 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88800 * 62.42802 * 9 7 2 11 11 C 1.55157 * 111.03963 * 186.33069 * 9 7 2 12 12 C 1.54328 * 103.02222 * 153.39635 * 11 9 7 13 13 N 1.47021 * 107.26624 * 338.14412 * 12 11 9 14 14 C 1.34777 * 125.65105 * 178.85209 * 13 12 11 15 15 O 1.21581 * 120.00679 * 179.68980 * 14 13 12 16 16 N 1.34782 * 120.00053 * 359.68679 * 14 13 12 17 17 C 1.46491 * 120.00454 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47493 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47497 * 180.02562 * 18 17 16 20 20 O 1.21288 * 119.99508 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00217 * 180.02562 * 19 18 17 22 22 C 1.46921 * 120.63131 * 179.97438 * 21 19 18 23 23 C 1.53192 * 108.77565 * 233.58669 * 22 21 19 24 24 C 1.53046 * 109.31128 * 305.36180 * 23 22 21 25 25 C 1.53046 * 109.53579 * 61.36447 * 24 23 22 26 26 C 1.46928 * 120.62932 * 359.97291 * 21 19 18 27 27 C 1.47425 * 108.70478 * 358.58296 * 13 12 11 28 28 H 0.97000 * 120.00697 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00204 * 297.57769 * 10 9 7 30 30 H 1.08995 * 110.72179 * 271.95800 * 11 9 7 31 31 H 1.09007 * 110.71335 * 35.22993 * 11 9 7 32 32 H 1.09003 * 109.99235 * 218.66724 * 12 11 9 33 33 H 1.08997 * 109.78051 * 97.49975 * 12 11 9 34 34 H 0.97002 * 119.99364 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.47174 * 60.00483 * 17 16 14 36 36 H 1.08995 * 109.47363 * 300.00824 * 17 16 14 37 37 H 1.09001 * 109.47130 * 60.00281 * 18 17 16 38 38 H 1.09003 * 109.47096 * 300.00360 * 18 17 16 39 39 H 1.08996 * 109.58905 * 113.79723 * 22 21 19 40 40 H 1.09008 * 109.58585 * 353.36923 * 22 21 19 41 41 H 1.09002 * 109.49998 * 185.41388 * 23 22 21 42 42 H 1.08995 * 109.50229 * 65.31205 * 23 22 21 43 43 H 1.08993 * 109.45866 * 181.38621 * 24 23 22 44 44 H 1.09000 * 109.45949 * 301.34958 * 24 23 22 45 45 H 1.09001 * 109.49519 * 58.58791 * 25 24 23 46 46 H 1.08996 * 109.49601 * 178.68448 * 25 24 23 47 47 H 1.09000 * 109.58351 * 246.20638 * 26 21 19 48 48 H 1.08999 * 109.58293 * 6.62848 * 26 21 19 49 49 H 1.09000 * 110.36603 * 143.19062 * 27 13 12 50 50 H 1.08994 * 110.36942 * 265.41003 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1837 11 6 2.2192 -3.7012 0.1585 12 6 1.3293 -4.7804 0.8104 13 7 0.2065 -4.0871 1.4587 14 6 -0.8063 -4.6806 2.1208 15 8 -1.6822 -4.0045 2.6247 16 7 -0.8483 -6.0238 2.2244 17 6 -1.9488 -6.6689 2.9445 18 6 -1.7578 -8.1866 2.9144 19 6 -2.8903 -8.8503 3.6547 20 8 -3.7639 -8.1757 4.1574 21 7 -2.9317 -10.1934 3.7591 22 6 -4.0290 -10.8549 4.4781 23 6 -3.4330 -11.7864 5.5382 24 6 -2.4488 -12.7493 4.8701 25 6 -1.3088 -11.9536 4.2303 26 6 -1.8804 -11.0239 3.1559 27 6 0.3754 -2.6348 1.2701 28 1 -0.4851 0.8400 0.0004 29 1 -0.2253 -1.9558 -1.2759 30 1 2.5837 -4.0340 -0.8133 31 1 3.0498 -3.4430 0.8155 32 1 1.9011 -5.3357 1.5539 33 1 0.9534 -5.4600 0.0455 34 1 -0.1493 -6.5632 1.8227 35 1 -2.8949 -6.4120 2.4680 36 1 -1.9576 -6.3246 3.9787 37 1 -0.8118 -8.4433 3.3912 38 1 -1.7488 -8.5313 1.8803 39 1 -4.6280 -11.4355 3.7766 40 1 -4.6542 -10.1040 4.9614 41 1 -4.2322 -12.3550 6.0137 42 1 -2.9099 -11.1950 6.2896 43 1 -2.0418 -13.4294 5.6182 44 1 -2.9670 -13.3230 4.1017 45 1 -0.8057 -11.3606 4.9940 46 1 -0.5961 -12.6411 3.7748 47 1 -2.3039 -11.6183 2.3463 48 1 -1.0880 -10.3846 2.7668 49 1 -0.5922 -2.1571 1.1166 50 1 0.8818 -2.1969 2.1302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591911378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = -145.370452 kcal Electronic energy + Delta-G solvation = -29824.027881 eV Core-core repulsion = 25656.647454 eV Total energy + Delta-G solvation = -4167.380427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44134 -41.06299 -39.15279 -38.42639 -36.22773 -36.01282 -34.21349 -34.01080 -32.60887 -31.92284 -30.97388 -29.47334 -27.26050 -26.40125 -24.92730 -24.10213 -23.55550 -21.77572 -21.43883 -21.10590 -19.83942 -19.20458 -18.76385 -18.37421 -17.23958 -17.19906 -16.89370 -16.65623 -16.57762 -16.18342 -15.59146 -15.45922 -15.36301 -14.98531 -14.86402 -14.71886 -14.54644 -14.42284 -14.24248 -13.83523 -13.73249 -13.50138 -13.33547 -13.26599 -12.82736 -12.77566 -12.56183 -12.47821 -12.31207 -12.24610 -12.16798 -12.05273 -11.85883 -11.60144 -11.47623 -11.37933 -11.16492 -10.86876 -10.64356 -10.32791 -10.22713 -9.66691 -9.31344 -8.22469 -6.40091 1.43727 1.44848 1.52612 1.54086 1.55590 2.06333 2.15357 2.39697 3.03308 3.08722 3.53622 3.70699 3.83141 3.91619 3.97679 4.03471 4.06102 4.12211 4.16999 4.22338 4.37161 4.38881 4.40157 4.59424 4.65046 4.66743 4.78761 4.80723 4.85636 4.86913 4.92688 4.95919 5.08528 5.10592 5.13490 5.18277 5.24963 5.32927 5.39180 5.45252 5.46753 5.49423 5.57553 5.78013 6.07320 6.20249 6.34816 6.67578 7.08575 7.10577 7.29169 7.36640 7.58425 8.82276 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.001921 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.745624 B =14575.151392 C =15072.915188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.633 5.633 14 C 0.708 3.292 15 O -0.649 6.649 16 N -0.724 5.724 17 C 0.159 3.841 18 C -0.134 4.134 19 C 0.513 3.487 20 O -0.591 6.591 21 N -0.609 5.609 22 C 0.105 3.895 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.135 4.135 26 C 0.096 3.904 27 C 0.127 3.873 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.040 0.960 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -30.249 5.790 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.369 5.369 14 C 0.410 3.590 15 O -0.532 6.532 16 N -0.382 5.382 17 C 0.034 3.966 18 C -0.174 4.174 19 C 0.302 3.698 20 O -0.471 6.471 21 N -0.342 5.342 22 C -0.018 4.018 23 C -0.169 4.169 24 C -0.157 4.157 25 C -0.173 4.173 26 C -0.025 4.025 27 C 0.003 3.997 28 H 0.077 0.923 29 H 0.220 0.780 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.058 0.942 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.536 -29.899 6.358 30.572 hybrid contribution -0.379 1.856 0.203 1.905 sum 0.157 -28.042 6.561 28.800 Atomic orbital electron populations 1.69849 1.07261 1.28391 1.50063 1.25868 0.95722 1.02975 0.93184 0.85512 0.78252 0.78293 0.78990 1.19269 1.21420 1.19445 1.21787 0.94008 0.91200 1.52360 0.91081 1.19881 0.87194 0.93352 0.80480 1.86084 1.51396 1.56768 1.45159 1.22597 0.97138 0.93641 1.01405 1.22177 0.86980 0.95451 0.96969 1.47865 1.24501 1.08629 1.55948 1.15761 0.81237 0.82811 0.79227 1.90868 1.41657 1.64971 1.55655 1.44728 1.29528 1.03476 1.60505 1.20673 0.88436 0.91737 0.95756 1.21763 0.99012 0.92307 1.04311 1.20834 0.86803 0.82438 0.79710 1.90741 1.41895 1.64337 1.50164 1.48229 1.26448 1.04980 1.54510 1.21660 0.89160 0.95872 0.95091 1.21884 1.00086 0.97617 0.97274 1.21537 0.96251 0.97414 1.00512 1.21933 0.98278 0.98674 0.98406 1.22132 0.90066 0.94221 0.96074 1.22665 0.99963 0.77850 0.99175 0.92279 0.77977 0.89389 0.89264 0.88685 0.90392 0.74827 0.93930 0.93612 0.84697 0.84821 0.90126 0.91765 0.89674 0.92970 0.90888 0.90764 0.92231 0.88357 0.89484 0.87430 0.94176 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.30 10.69 21.45 0.23 -51.08 16 2 C 0.02 1.24 5.29 84.66 0.45 1.69 16 3 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.56 -28.90 8.27 25.60 0.21 -28.69 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 9 C 0.23 11.16 0.87 -10.15 -0.01 11.16 16 10 O -0.59 -30.17 13.16 -148.98 -1.96 -32.13 16 11 C -0.11 -3.98 6.13 31.78 0.19 -3.79 16 12 C 0.11 3.22 6.15 86.73 0.53 3.76 16 13 N -0.63 -26.13 3.33 -829.75 -2.76 -28.89 16 14 C 0.71 29.81 8.49 179.05 1.52 31.33 16 15 O -0.65 -34.71 16.60 -3.97 -0.07 -34.78 16 16 N -0.72 -20.68 5.52 -478.55 -2.64 -23.32 16 17 C 0.16 4.42 4.96 86.38 0.43 4.85 16 18 C -0.13 -2.05 4.16 29.85 0.12 -1.92 16 19 C 0.51 10.92 7.70 87.66 0.67 11.60 16 20 O -0.59 -19.22 15.40 -3.06 -0.05 -19.27 16 21 N -0.61 -8.76 2.97 -818.99 -2.43 -11.19 16 22 C 0.10 1.50 6.43 86.36 0.56 2.06 16 23 C -0.13 -1.31 6.08 30.67 0.19 -1.12 16 24 C -0.12 -0.70 5.88 30.63 0.18 -0.52 16 25 C -0.13 -0.65 6.08 30.66 0.19 -0.47 16 26 C 0.10 0.57 6.34 86.35 0.55 1.12 16 27 C 0.13 6.42 5.38 86.86 0.47 6.89 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.37 20.33 7.56 -74.06 -0.56 19.77 16 30 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.09 3.00 8.03 -2.38 -0.02 2.98 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.41 7.99 7.46 -92.71 -0.69 7.30 16 35 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 37 H 0.14 1.17 7.69 -2.39 -0.02 1.15 16 38 H 0.13 1.22 7.94 -2.39 -0.02 1.20 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.31 7.01 -2.38 -0.02 1.29 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 46 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.11 0.24 5.93 -2.39 -0.01 0.22 16 49 H 0.04 2.36 7.33 -2.39 -0.02 2.34 16 50 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -80.98 395.58 -1.70 -82.68 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.30 Total: 35.75 kcal Atomic # 6 Polarization: 31.69 SS G_CDS: 6.25 Total: 37.94 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -7.60 Total: -114.48 kcal Atomic # 8 Polarization: -84.10 SS G_CDS: -2.07 Total: -86.18 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -80.98 -1.70 -82.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591911378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.689 kcal (2) G-P(sol) polarization free energy of solvation -80.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds