Wall clock time and date at job start Sat Apr 11 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99738 * 2 1 4 4 H 1.48505 * 109.46926 * 274.92639 * 3 2 1 5 5 H 1.48504 * 109.47520 * 34.92525 * 3 2 1 6 6 H 1.48498 * 109.47144 * 154.92898 * 3 2 1 7 7 C 1.37869 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00489 * 179.02631 * 7 2 1 9 9 C 1.50708 * 119.99639 * 359.30427 * 7 2 1 10 10 O 1.42897 * 110.88832 * 294.38719 * 9 7 2 11 11 C 1.55161 * 111.00307 * 170.50689 * 9 7 2 12 12 C 1.54366 * 102.92193 * 206.45551 * 11 9 7 13 13 N 1.47022 * 107.28738 * 22.13501 * 12 11 9 14 14 C 1.34780 * 125.64929 * 181.12158 * 13 12 11 15 15 O 1.21583 * 120.00293 * 179.97438 * 14 13 12 16 16 N 1.34779 * 119.99842 * 359.97003 * 14 13 12 17 17 C 1.46501 * 119.99871 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46939 * 175.22998 * 17 16 14 19 19 N 1.46895 * 115.55244 * 269.73143 * 18 17 16 20 20 C 1.47019 * 111.00022 * 58.50606 * 19 18 17 21 21 C 1.53097 * 109.25787 * 177.61388 * 20 19 18 22 22 O 1.43011 * 109.26371 * 56.84297 * 21 20 19 23 23 C 1.43012 * 113.74100 * 301.33531 * 22 21 20 24 24 C 1.47015 * 110.99951 * 294.86977 * 19 18 17 25 25 C 1.52999 * 117.49816 * 124.05890 * 18 17 16 26 26 C 1.53007 * 117.49659 * 55.40216 * 18 17 16 27 27 C 1.47425 * 108.70296 * 1.10023 * 13 12 11 28 28 H 0.96992 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.96703 * 113.99909 * 59.29991 * 10 9 7 30 30 H 1.08998 * 110.72071 * 324.79110 * 11 9 7 31 31 H 1.09005 * 110.71844 * 88.06165 * 11 9 7 32 32 H 1.09005 * 109.84538 * 262.73636 * 12 11 9 33 33 H 1.08998 * 109.90462 * 141.58098 * 12 11 9 34 34 H 0.97006 * 119.99831 * 359.97438 * 16 14 13 35 35 H 1.09007 * 109.46853 * 295.22670 * 17 16 14 36 36 H 1.08995 * 109.47372 * 55.22872 * 17 16 14 37 37 H 1.09006 * 109.50150 * 297.54396 * 20 19 18 38 38 H 1.08999 * 109.50571 * 57.67262 * 20 19 18 39 39 H 1.09003 * 109.49963 * 296.90936 * 21 20 19 40 40 H 1.09004 * 109.50484 * 176.78769 * 21 20 19 41 41 H 1.08999 * 109.50296 * 298.73396 * 23 22 21 42 42 H 1.09002 * 109.50907 * 178.60148 * 23 22 21 43 43 H 1.08994 * 109.50843 * 302.32642 * 24 19 18 44 44 H 1.09005 * 109.50414 * 62.41433 * 24 19 18 45 45 H 1.08997 * 117.50043 * 0.02562 * 25 18 17 46 46 H 1.09001 * 117.49781 * 145.02305 * 25 18 17 47 47 H 1.09000 * 117.49749 * 214.97778 * 26 18 17 48 48 H 1.08994 * 117.49977 * 359.97438 * 26 18 17 49 49 H 1.09002 * 110.36197 * 217.02806 * 27 13 12 50 50 H 1.09000 * 110.46382 * 94.75418 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3925 2.1065 -1.3950 5 1 1.5025 2.6205 0.8016 6 1 3.5949 1.4124 0.5933 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1940 -0.0154 9 6 1.2512 -2.4991 0.0170 10 8 0.5319 -2.6567 1.2416 11 6 2.2079 -3.6966 -0.2242 12 6 1.2778 -4.7624 -0.8422 13 7 0.1217 -4.0556 -1.4125 14 6 -0.9294 -4.6355 -2.0254 15 8 -1.8337 -3.9493 -2.4607 16 7 -0.9778 -5.9761 -2.1559 17 6 -2.1205 -6.6064 -2.8216 18 6 -1.8738 -8.1116 -2.9422 19 7 -1.1964 -8.5461 -4.1711 20 6 0.1138 -7.8937 -4.3094 21 6 0.8088 -8.4185 -5.5685 22 8 -0.0325 -8.1893 -6.7021 23 6 -1.3165 -8.8110 -6.6012 24 6 -2.0331 -8.2903 -5.3525 25 6 -2.9247 -9.0497 -2.3452 26 6 -1.5679 -8.8825 -1.6565 27 6 0.3021 -2.6076 -1.2025 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1138 -1.9571 1.4113 30 1 2.9989 -3.4237 -0.9227 31 1 2.6284 -4.0499 0.7174 32 1 0.9444 -5.4553 -0.0696 33 1 1.8049 -5.3048 -1.6270 34 1 -0.2560 -6.5235 -1.8090 35 1 -3.0235 -6.4320 -2.2364 36 1 -2.2436 -6.1776 -3.8161 37 1 -0.0235 -6.8155 -4.3920 38 1 0.7258 -8.1175 -3.4356 39 1 0.9943 -9.4874 -5.4631 40 1 1.7555 -7.8961 -5.7062 41 1 -1.1928 -9.8914 -6.5258 42 1 -1.9069 -8.5725 -7.4858 43 1 -2.9881 -8.8034 -5.2403 44 1 -2.2052 -7.2184 -5.4514 45 1 -3.7920 -8.5947 -1.8670 46 1 -3.1131 -9.9896 -2.8642 47 1 -0.8644 -9.7124 -1.7226 48 1 -1.5421 -8.3174 -0.7248 49 1 -0.6546 -2.1342 -0.9819 50 1 0.7580 -2.1492 -2.0801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592016603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:15 Heat of formation + Delta-G solvation = -79.890186 kcal Electronic energy + Delta-G solvation = -31321.317172 eV Core-core repulsion = 27156.776182 eV Total energy + Delta-G solvation = -4164.540990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44145 -39.43923 -38.09343 -37.17320 -34.23461 -34.09670 -33.62408 -32.26337 -31.43221 -30.13772 -27.95184 -27.36204 -26.46389 -24.72801 -24.36093 -22.64799 -22.32409 -21.26484 -19.81894 -19.65042 -19.29700 -17.72001 -17.10637 -16.75395 -16.35339 -15.85296 -15.61215 -15.26613 -15.20120 -15.14770 -15.03169 -14.85232 -14.39827 -13.98583 -13.65249 -13.60644 -13.05053 -12.83220 -12.71931 -12.67633 -12.48028 -12.03982 -11.80819 -11.73235 -11.69607 -11.62114 -11.42252 -11.03798 -10.89431 -10.80881 -10.73581 -10.60718 -10.50214 -10.32134 -10.19700 -9.92689 -9.58369 -9.32453 -8.89542 -8.71668 -8.65931 -8.35944 -7.67791 -6.26630 -4.37755 2.97047 3.20688 3.28741 3.29467 3.31558 3.55192 3.63399 3.74921 4.25806 4.36367 4.46447 4.61085 4.63946 4.73854 4.75483 4.89445 4.98692 5.00100 5.07032 5.21140 5.27101 5.36534 5.39532 5.40350 5.52139 5.53933 5.63344 5.64615 5.65764 5.70028 5.76088 5.86182 5.91903 5.98835 6.10847 6.51047 6.57321 6.69809 6.71738 6.75026 6.88161 6.90581 6.98275 7.26411 7.34213 7.65761 7.74829 8.02822 8.53966 8.67404 9.13486 9.28299 9.36257 10.79383 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002753 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.658914 B =10169.079388 C =10617.171306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.106 3.894 13 N -0.628 5.628 14 C 0.715 3.285 15 O -0.597 6.597 16 N -0.748 5.748 17 C 0.155 3.845 18 C 0.010 3.990 19 N -0.496 5.496 20 C 0.016 3.984 21 C 0.065 3.935 22 O -0.385 6.385 23 C 0.065 3.935 24 C 0.015 3.985 25 C -0.145 4.145 26 C -0.153 4.153 27 C 0.117 3.883 28 H 0.270 0.730 29 H 0.379 0.621 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -20.322 -7.527 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.364 5.364 14 C 0.417 3.583 15 O -0.476 6.476 16 N -0.406 5.406 17 C 0.028 3.972 18 C -0.081 4.081 19 N -0.220 5.220 20 C -0.112 4.112 21 C -0.012 4.012 22 O -0.303 6.303 23 C -0.012 4.012 24 C -0.113 4.113 25 C -0.183 4.183 26 C -0.191 4.191 27 C -0.005 4.005 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.319 -20.639 -7.996 22.255 hybrid contribution 0.177 1.882 0.244 1.906 sum -2.142 -18.758 -7.752 20.409 Atomic orbital electron populations 1.69783 1.05926 1.27835 1.49272 1.25094 0.95047 0.99770 0.93396 0.86399 0.79861 0.82561 0.78147 1.20489 1.20971 1.19668 1.21452 0.93653 0.90021 1.52636 0.91538 1.19645 0.87094 0.91554 0.81034 1.86107 1.57573 1.53527 1.41892 1.22589 0.97286 0.95317 1.00110 1.21913 0.87683 0.95922 0.96214 1.47947 1.19526 1.10011 1.58949 1.15530 0.82155 0.81337 0.79266 1.90888 1.38543 1.62539 1.55643 1.45159 1.24994 1.05581 1.64834 1.20957 0.89085 0.89135 0.97983 1.21835 1.04143 0.90799 0.91287 1.62258 1.02792 1.56331 1.00600 1.22796 0.90818 0.98269 0.99309 1.22675 0.93452 1.00511 0.84541 1.88010 1.26120 1.75109 1.41098 1.22655 0.84327 0.97019 0.97168 1.22798 0.97361 1.00688 0.90480 1.23087 0.92834 1.00287 1.02114 1.23082 0.99270 1.02177 0.94537 1.23093 1.02566 0.75625 0.99231 0.92038 0.77140 0.90396 0.90832 0.92790 0.93338 0.77358 0.91403 0.91451 0.92765 0.89703 0.92409 0.88343 0.92406 0.88453 0.89467 0.93258 0.88203 0.87935 0.87917 0.88155 0.89456 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 10.66 55.43 0.59 -23.25 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.94 8.28 -34.44 -0.29 -14.23 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 9 C 0.25 5.93 0.88 -89.62 -0.08 5.85 16 10 O -0.58 -14.67 13.18 -35.23 -0.46 -15.13 16 11 C -0.12 -2.24 6.14 -24.87 -0.15 -2.40 16 12 C 0.11 1.83 6.15 -3.04 -0.02 1.81 16 13 N -0.63 -13.06 3.33 -176.21 -0.59 -13.65 16 14 C 0.72 14.70 8.49 -86.91 -0.74 13.96 16 15 O -0.60 -14.78 16.60 5.29 0.09 -14.69 16 16 N -0.75 -11.26 4.57 -65.22 -0.30 -11.55 16 17 C 0.15 2.05 4.89 -4.04 -0.02 2.03 16 18 C 0.01 0.10 1.12 -131.60 -0.15 -0.05 16 19 N -0.50 -4.79 4.80 -218.65 -1.05 -5.84 16 20 C 0.02 0.16 5.02 -3.71 -0.02 0.15 16 21 C 0.07 0.62 7.01 37.21 0.26 0.88 16 22 O -0.39 -4.35 10.83 -35.23 -0.38 -4.74 16 23 C 0.07 0.57 7.01 37.21 0.26 0.83 16 24 C 0.01 0.14 5.46 -3.71 -0.02 0.12 16 25 C -0.15 -1.17 10.10 -26.69 -0.27 -1.44 16 26 C -0.15 -1.30 9.59 -26.69 -0.26 -1.56 16 27 C 0.12 2.85 5.26 -2.53 -0.01 2.83 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.38 9.82 7.79 45.56 0.36 10.18 16 30 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.39 5.08 6.97 -40.82 -0.28 4.79 16 35 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 36 H 0.07 1.01 6.50 -51.93 -0.34 0.67 16 37 H 0.05 0.70 7.09 -51.93 -0.37 0.33 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.55 6.68 -51.93 -0.35 0.21 16 45 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 2.42 7.18 -51.93 -0.37 2.05 16 50 H 0.06 1.43 8.03 -51.93 -0.42 1.02 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -30.89 393.46 -10.42 -41.31 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -7.63 Total: 15.76 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.59 Total: 10.54 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -1.34 Total: -54.29 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.76 Total: -34.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.89 -10.42 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592016603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.582 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds