Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48502 * 109.46837 * 240.00153 * 3 2 1 5 5 H 1.48505 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47362 * 119.99797 * 3 2 1 7 7 C 1.38955 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99672 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99871 * 355.01967 * 14 13 12 16 16 N 1.34777 * 120.00015 * 175.01462 * 14 13 12 17 17 C 1.46922 * 120.62733 * 4.93920 * 16 14 13 18 18 C 1.53632 * 108.53787 * 126.36997 * 17 16 14 19 19 C 1.53039 * 109.24134 * 54.85457 * 18 17 16 20 20 C 1.52999 * 109.46098 * 178.48571 * 19 18 17 21 21 H 1.09003 * 109.47727 * 60.09421 * 20 19 18 22 22 C 1.53094 * 109.48316 * 300.07537 * 20 19 18 23 23 C 1.53176 * 109.16273 * 182.40503 * 22 20 19 24 24 C 1.53178 * 109.03585 * 56.98058 * 23 22 20 25 25 C 1.53093 * 109.16174 * 303.01542 * 24 23 22 26 26 O 1.42894 * 109.48282 * 180.12624 * 20 19 18 27 27 C 1.53032 * 109.53840 * 298.51175 * 19 18 17 28 28 C 1.46927 * 120.62826 * 185.22456 * 16 14 13 29 29 H 0.97001 * 120.00298 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00133 * 0.27015 * 9 7 2 31 31 H 1.08995 * 109.47084 * 299.99356 * 12 10 9 32 32 H 1.08998 * 109.47024 * 60.00119 * 12 10 9 33 33 H 0.96995 * 120.00017 * 0.02562 * 13 12 10 34 34 H 1.08996 * 109.59127 * 246.19978 * 17 16 14 35 35 H 1.08997 * 109.59320 * 6.63286 * 17 16 14 36 36 H 1.08997 * 109.63309 * 294.86210 * 18 17 16 37 37 H 1.09004 * 109.42778 * 174.72202 * 18 17 16 38 38 H 1.09009 * 109.44903 * 58.52720 * 19 18 17 39 39 H 1.09002 * 109.51595 * 302.31027 * 22 20 19 40 40 H 1.09001 * 109.52322 * 62.43416 * 22 20 19 41 41 H 1.09004 * 109.54413 * 176.84444 * 23 22 20 42 42 H 1.09001 * 109.54358 * 297.02074 * 23 22 20 43 43 H 1.08997 * 109.52506 * 62.92153 * 24 23 22 44 44 H 1.09006 * 109.52065 * 183.11290 * 24 23 22 45 45 H 1.08998 * 109.48235 * 177.59285 * 25 24 23 46 46 H 1.09003 * 109.48268 * 297.61491 * 25 24 23 47 47 H 1.09002 * 109.49885 * 301.40747 * 27 19 18 48 48 H 1.09013 * 109.49561 * 181.31650 * 27 19 18 49 49 H 1.08997 * 109.58538 * 353.37100 * 28 16 14 50 50 H 1.08993 * 109.58597 * 113.65701 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2126 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1957 -5.9765 0.0004 14 6 1.7464 -7.2472 0.0002 15 8 0.5548 -7.4707 0.0921 16 7 2.6180 -8.2701 -0.1019 17 6 4.0662 -8.0221 -0.1051 18 6 4.7124 -8.8877 0.9874 19 6 4.3252 -10.3516 0.7657 20 6 4.9968 -11.2231 1.8289 21 1 4.6673 -10.9074 2.8188 22 6 6.5170 -11.0744 1.7253 23 6 7.1834 -11.9950 2.7523 24 6 6.7220 -13.4347 2.5062 25 6 5.1939 -13.4923 2.5797 26 8 4.6380 -12.5905 1.6206 27 6 2.8057 -10.5005 0.8697 28 6 2.1379 -9.6538 -0.2184 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0038 31 1 0.6174 -4.9205 0.8914 32 1 0.6166 -4.9209 -0.8886 33 1 3.1493 -5.7992 0.0000 34 1 4.4802 -8.2873 -1.0778 35 1 4.2571 -6.9689 0.1008 36 1 4.3619 -8.5630 1.9670 37 1 5.7965 -8.7863 0.9363 38 1 4.6543 -10.6682 -0.2241 39 1 6.8425 -11.3512 0.7225 40 1 6.7964 -10.0401 1.9264 41 1 8.2666 -11.9361 2.6461 42 1 6.8983 -11.6862 3.7580 43 1 7.0517 -13.7592 1.5192 44 1 7.1482 -14.0889 3.2669 45 1 4.8575 -14.5061 2.3630 46 1 4.8671 -13.2067 3.5795 47 1 2.4731 -10.1607 1.8505 48 1 2.5327 -11.5472 0.7349 49 1 1.0561 -9.6775 -0.0874 50 1 2.3957 -10.0485 -1.2011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596599569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -146.233759 kcal Electronic energy + Delta-G solvation = -29763.964165 eV Core-core repulsion = 25596.546302 eV Total energy + Delta-G solvation = -4167.417863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.64164 -40.60926 -40.04500 -38.35287 -36.26531 -35.42263 -34.71623 -34.52467 -33.36658 -32.09121 -31.07814 -29.19337 -27.08691 -26.23051 -25.19112 -24.13356 -23.47416 -21.73770 -21.35413 -21.15574 -20.59078 -20.07198 -19.27399 -17.60000 -17.26790 -17.17762 -17.01520 -16.86749 -16.52194 -16.00862 -15.87716 -15.60853 -15.50402 -15.31446 -15.22303 -14.76320 -14.71796 -14.44566 -14.29899 -13.88836 -13.67921 -13.57993 -13.53005 -13.42637 -13.14409 -12.89156 -12.60202 -12.46123 -12.25200 -12.13052 -12.10038 -11.98214 -11.70063 -11.55479 -11.53059 -11.39566 -11.20518 -11.04155 -10.55166 -10.32486 -10.27686 -10.08976 -9.51297 -8.49907 -6.00297 1.38823 1.42806 1.51745 1.57774 1.89910 2.07709 2.28720 2.78712 2.85140 3.15749 3.17141 3.60054 3.75598 3.89414 3.95571 4.01917 4.09161 4.09834 4.20839 4.22998 4.28287 4.36924 4.40580 4.43527 4.45741 4.55342 4.60931 4.69917 4.75154 4.80318 4.88904 4.92201 4.96057 4.98351 5.04220 5.10512 5.15179 5.19711 5.25125 5.31559 5.37188 5.39329 5.47364 5.58500 5.89183 5.92784 6.36035 6.48496 6.89721 7.03840 7.41843 7.50285 7.94599 8.66687 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.001910 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.951434 B =14655.219509 C =15585.590737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.624 5.624 17 C 0.106 3.894 18 C -0.122 4.122 19 C -0.071 4.071 20 C 0.098 3.902 21 H 0.050 0.950 22 C -0.151 4.151 23 C -0.126 4.126 24 C -0.154 4.154 25 C 0.055 3.945 26 O -0.394 6.394 27 C -0.115 4.115 28 C 0.128 3.872 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -26.079 3.601 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.514 6.514 16 N -0.361 5.361 17 C -0.016 4.016 18 C -0.160 4.160 19 C -0.090 4.090 20 C 0.041 3.959 21 H 0.068 0.932 22 C -0.188 4.188 23 C -0.163 4.163 24 C -0.191 4.191 25 C -0.022 4.022 26 O -0.314 6.314 27 C -0.154 4.154 28 C 0.006 3.994 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.157 -26.110 3.501 29.013 hybrid contribution 0.111 1.115 0.321 1.165 sum 12.268 -24.995 3.822 28.104 Atomic orbital electron populations 1.69677 1.07028 1.29691 1.49171 1.26149 0.96549 1.02726 0.95781 0.84913 0.77693 0.76172 0.79110 1.19448 1.19702 1.19461 1.19712 0.92999 0.83479 1.50488 0.89453 1.41829 1.09592 1.04577 1.63383 1.20362 0.88109 0.85819 0.83581 1.90454 1.15086 1.87537 1.58067 1.20592 0.91082 0.83251 1.03917 1.44899 1.11041 1.03291 1.79360 1.15905 0.84856 0.80926 0.77754 1.90858 1.15969 1.84428 1.60142 1.47328 1.06247 1.05749 1.76820 1.21946 0.78618 1.00282 1.00790 1.22036 1.01999 0.93539 0.98449 1.21065 0.94594 0.93685 0.99639 1.22076 0.94150 0.81882 0.97842 0.93194 1.22259 0.94818 1.01176 1.00561 1.21621 1.00951 0.94739 0.98989 1.22173 0.96317 0.97591 1.03059 1.22701 0.93199 0.94106 0.92148 1.87885 1.72915 1.16944 1.53658 1.21815 0.95098 1.00311 0.98132 1.21576 0.99720 0.78498 0.99624 0.91081 0.76718 0.89292 0.89102 0.75055 0.89122 0.90535 0.92149 0.87962 0.89461 0.90985 0.89764 0.90704 0.91908 0.91384 0.89751 0.88028 0.93237 0.93075 0.89358 0.90798 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.24 5.29 -306.98 -1.62 -29.86 16 10 C 0.43 20.27 7.85 87.66 0.69 20.96 16 11 O -0.62 -32.14 15.24 -3.06 -0.05 -32.19 16 12 C 0.14 5.35 6.16 85.63 0.53 5.88 16 13 N -0.73 -25.32 5.44 -482.27 -2.62 -27.94 16 14 C 0.70 24.02 8.30 179.05 1.49 25.50 16 15 O -0.63 -25.78 15.77 -4.00 -0.06 -25.84 16 16 N -0.62 -15.94 2.97 -836.07 -2.48 -18.42 16 17 C 0.11 2.04 6.42 86.51 0.56 2.59 16 18 C -0.12 -1.84 5.06 30.82 0.16 -1.69 16 19 C -0.07 -1.06 1.95 -10.77 -0.02 -1.08 16 20 C 0.10 1.41 2.22 30.63 0.07 1.48 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 C -0.15 -1.71 4.99 30.68 0.15 -1.56 16 23 C -0.13 -1.26 6.03 30.71 0.19 -1.08 16 24 C -0.15 -1.48 6.14 30.68 0.19 -1.29 16 25 C 0.05 0.65 6.84 72.01 0.49 1.14 16 26 O -0.39 -6.48 9.71 -148.98 -1.45 -7.92 16 27 C -0.12 -2.09 5.23 30.67 0.16 -1.93 16 28 C 0.13 2.80 6.44 86.36 0.56 3.35 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.40 19.46 7.90 -92.70 -0.73 18.72 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 33 H 0.41 13.80 4.92 -92.71 -0.46 13.34 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.64 5.64 -2.39 -0.01 1.63 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.12 6.41 -2.39 -0.02 1.10 16 38 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.83 6.54 -2.39 -0.02 0.82 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.52 7.65 -2.38 -0.02 1.50 16 49 H 0.07 1.94 6.99 -2.39 -0.02 1.92 16 50 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.08 390.79 0.27 -67.81 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.23 Total: 44.82 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 6.48 Total: 34.37 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -6.44 Total: -124.73 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -1.56 Total: -65.95 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.08 0.27 -67.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596599569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.425 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds