Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46936 * 269.99440 * 3 2 1 5 5 H 1.48494 * 109.47108 * 29.99646 * 3 2 1 6 6 H 1.48506 * 109.47272 * 149.99568 * 3 2 1 7 7 C 1.37884 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46930 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47108 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00272 * 179.97438 * 12 11 10 14 14 O 1.21349 * 120.00166 * 0.02562 * 13 12 11 15 15 C 1.49456 * 120.00048 * 179.97438 * 13 12 11 16 16 O 1.21345 * 120.00179 * 6.71211 * 15 13 12 17 17 N 1.34779 * 119.99791 * 186.70800 * 15 13 12 18 18 C 1.47080 * 120.88508 * 7.83459 * 17 15 13 19 19 C 1.53690 * 108.27867 * 128.75291 * 18 17 15 20 20 N 1.46908 * 109.25494 * 54.08522 * 19 18 17 21 21 C 1.46899 * 110.99750 * 172.60951 * 20 19 18 22 22 H 1.08997 * 110.43782 * 75.00543 * 21 20 19 23 23 C 1.54804 * 110.48731 * 312.45332 * 21 20 19 24 24 C 1.55232 * 101.99013 * 220.52353 * 23 21 20 25 25 O 1.44378 * 103.56478 * 36.88190 * 24 23 21 26 26 C 1.43753 * 106.97555 * 320.01377 * 25 24 23 27 27 C 1.46897 * 111.26552 * 296.75714 * 20 19 18 28 28 C 1.47081 * 120.88011 * 188.11510 * 17 15 13 29 29 H 0.97002 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47346 * 59.99417 * 9 7 2 31 31 H 1.09002 * 109.46525 * 299.99973 * 9 7 2 32 32 H 1.08995 * 109.46859 * 59.99175 * 10 9 7 33 33 H 1.09000 * 109.46611 * 299.99697 * 10 9 7 34 34 H 1.09000 * 109.47592 * 299.99544 * 11 10 9 35 35 H 1.09007 * 109.47320 * 59.99989 * 11 10 9 36 36 H 0.97008 * 120.00119 * 359.97438 * 12 11 10 37 37 H 1.08998 * 109.62867 * 248.52766 * 18 17 15 38 38 H 1.09004 * 109.62647 * 9.10174 * 18 17 15 39 39 H 1.09001 * 109.64912 * 294.08587 * 19 18 17 40 40 H 1.09000 * 109.44480 * 173.96051 * 19 18 17 41 41 H 1.09002 * 110.91426 * 338.64440 * 23 21 20 42 42 H 1.08997 * 110.90924 * 102.25028 * 23 21 20 43 43 H 1.09006 * 110.51622 * 278.38893 * 24 23 21 44 44 H 1.08999 * 110.64393 * 155.44336 * 24 23 21 45 45 H 1.08998 * 109.87639 * 267.09102 * 26 25 24 46 46 H 1.08998 * 109.87465 * 145.93700 * 26 25 24 47 47 H 1.08998 * 109.49681 * 303.14075 * 27 20 19 48 48 H 1.09001 * 109.51101 * 183.07896 * 27 20 19 49 49 H 1.09009 * 109.62890 * 350.89672 * 28 17 15 50 50 H 1.09002 * 109.63096 * 111.27846 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 7 6.0398 -4.0179 0.0014 13 6 7.3648 -4.2642 0.0010 14 8 8.1534 -3.3420 0.0006 15 6 7.8629 -5.6733 0.0020 16 8 7.0811 -6.5934 -0.1195 17 7 9.1805 -5.9222 0.1379 18 6 10.1243 -4.8400 0.4567 19 6 10.9722 -5.2791 1.6610 20 7 11.5932 -6.5779 1.3685 21 6 12.5498 -6.9524 2.4186 22 1 12.0225 -7.2813 3.3140 23 6 13.4865 -5.7644 2.7469 24 6 14.8577 -6.4722 2.9158 25 8 14.8282 -7.5113 1.9140 26 6 13.4984 -8.0574 1.9147 27 6 10.5786 -7.6239 1.1832 28 6 9.7137 -7.2820 -0.0346 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6801 0.8910 31 1 3.8751 -0.6805 -0.8889 32 1 3.6583 -3.1503 -0.8891 33 1 3.6578 -3.1506 0.8908 34 1 5.9148 -2.1229 -0.8890 35 1 5.9149 -2.1229 0.8910 36 1 5.4094 -4.7553 0.0021 37 1 10.7702 -4.6530 -0.4012 38 1 9.5718 -3.9343 0.7069 39 1 10.3375 -5.3697 2.5425 40 1 11.7495 -4.5379 1.8469 41 1 13.5157 -5.0525 1.9220 42 1 13.1831 -5.2739 3.6717 43 1 14.9449 -6.9030 3.9133 44 1 15.6751 -5.7771 2.7240 45 1 13.4517 -8.9184 2.5815 46 1 13.2188 -8.3534 0.9037 47 1 9.9494 -7.6819 2.0714 48 1 11.0701 -8.5835 1.0225 49 1 8.8896 -7.9917 -0.1094 50 1 10.3181 -7.3262 -0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597257479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -90.684392 kcal Electronic energy + Delta-G solvation = -29441.181856 eV Core-core repulsion = 25276.172794 eV Total energy + Delta-G solvation = -4165.009061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17766 -40.22328 -38.86303 -37.91578 -36.01595 -34.91219 -33.37475 -32.05077 -31.52883 -31.18871 -29.62853 -27.85551 -26.87335 -25.03409 -24.15887 -22.65041 -22.64909 -21.44349 -20.97693 -20.59913 -19.62952 -18.04102 -17.34380 -16.99732 -16.84638 -16.67007 -16.35640 -15.85297 -15.61472 -15.47719 -15.17351 -15.12608 -14.86463 -14.62214 -14.21329 -14.04324 -13.87022 -13.46817 -13.25939 -12.86379 -12.73154 -12.47446 -12.41910 -12.14355 -12.01314 -11.90035 -11.83389 -11.67282 -11.56623 -11.41552 -11.16815 -11.13036 -10.94381 -10.19086 -10.14427 -9.97057 -9.79643 -9.36815 -9.27705 -9.25520 -9.10885 -8.79911 -8.58818 -6.09125 -4.08309 1.27749 2.14100 3.02135 3.14466 3.28231 3.35982 3.38858 3.41088 3.45660 3.88425 4.20491 4.35034 4.40859 4.41027 4.51724 4.56524 4.63530 4.72180 4.75939 4.87670 4.94508 5.10361 5.14839 5.17962 5.21208 5.24455 5.26297 5.33627 5.37892 5.39422 5.48052 5.49993 5.51689 5.71165 5.87739 5.94357 6.17697 6.32399 6.34233 6.43039 6.49047 6.53326 6.69815 6.81189 7.15347 7.18259 7.29774 7.58553 7.71834 7.90458 8.46986 8.94851 9.52518 11.04053 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.001766 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.163464 B =15855.714754 C =16638.465370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.111 3.889 12 N -0.688 5.688 13 C 0.503 3.497 14 O -0.519 6.519 15 C 0.509 3.491 16 O -0.521 6.521 17 N -0.587 5.587 18 C 0.080 3.920 19 C 0.036 3.964 20 N -0.528 5.528 21 C 0.048 3.952 22 H 0.058 0.942 23 C -0.154 4.154 24 C 0.048 3.952 25 O -0.374 6.374 26 C 0.056 3.944 27 C 0.040 3.960 28 C 0.114 3.886 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.769 -15.934 5.525 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.011 4.011 12 N -0.339 5.339 13 C 0.284 3.716 14 O -0.398 6.398 15 C 0.292 3.708 16 O -0.397 6.397 17 N -0.322 5.322 18 C -0.042 4.042 19 C -0.092 4.092 20 N -0.254 5.254 21 C -0.060 4.060 22 H 0.075 0.925 23 C -0.192 4.192 24 C -0.029 4.029 25 O -0.293 6.293 26 C -0.021 4.021 27 C -0.088 4.088 28 C -0.009 4.009 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.161 0.839 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 30.140 -15.665 4.889 34.318 hybrid contribution -0.560 0.478 0.912 1.172 sum 29.580 -15.188 5.801 33.754 Atomic orbital electron populations 1.69913 1.06320 1.26980 1.50816 1.25034 0.94757 0.99234 0.94448 0.86771 0.80353 0.83535 0.78587 1.20224 1.21356 1.18932 1.21089 0.89248 0.94583 1.51265 0.90944 1.19500 0.97389 0.91197 0.96712 1.21748 0.90087 1.01328 1.02213 1.21875 0.96743 0.79964 1.02550 1.46066 1.06023 1.11240 1.70570 1.20033 0.83861 0.89112 0.78592 1.90501 1.53855 1.45882 1.49553 1.20260 0.82760 0.89822 0.77936 1.90758 1.54697 1.45816 1.48408 1.47991 1.06073 1.10151 1.67954 1.23041 0.91930 0.91781 0.97448 1.22752 0.97737 0.91395 0.97321 1.62123 1.16528 1.02886 1.43871 1.23079 0.93926 0.96025 0.93002 0.92454 1.23379 0.94761 0.98026 1.03003 1.23560 0.97605 0.89574 0.92158 1.88908 1.29457 1.52725 1.58166 1.23210 0.81802 0.94582 1.02515 1.22517 0.93054 0.95373 0.97871 1.21811 0.97734 0.83370 0.97965 0.92663 0.96249 0.96654 0.91771 0.91801 0.90969 0.91019 0.75079 0.90377 0.83917 0.94255 0.88792 0.88918 0.90039 0.92212 0.88677 0.92342 0.88762 0.93961 0.89215 0.88239 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.70 5.67 -4.04 -0.02 1.67 16 12 N -0.69 -9.43 5.55 -60.73 -0.34 -9.77 16 13 C 0.50 6.88 7.74 -11.59 -0.09 6.79 16 14 O -0.52 -7.65 13.20 5.50 0.07 -7.57 16 15 C 0.51 6.50 7.75 -11.58 -0.09 6.41 16 16 O -0.52 -7.57 15.96 5.50 0.09 -7.48 16 17 N -0.59 -6.10 3.00 -172.69 -0.52 -6.62 16 18 C 0.08 0.74 6.14 -3.37 -0.02 0.72 16 19 C 0.04 0.27 5.28 -3.46 -0.02 0.25 16 20 N -0.53 -3.71 4.39 -224.23 -0.98 -4.69 16 21 C 0.05 0.29 2.81 -66.19 -0.19 0.11 16 22 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 23 C -0.15 -0.80 5.51 -24.60 -0.14 -0.94 16 24 C 0.05 0.27 7.72 38.34 0.30 0.56 16 25 O -0.37 -3.14 11.52 -35.23 -0.41 -3.55 16 26 C 0.06 0.36 6.92 37.73 0.26 0.62 16 27 C 0.04 0.27 5.43 -3.70 -0.02 0.25 16 28 C 0.11 0.94 6.61 -3.60 -0.02 0.91 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.41 5.27 7.96 -40.82 -0.33 4.94 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.14 1.56 4.44 -54.24 -0.24 1.32 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.59 5.90 -51.93 -0.31 0.28 16 41 H 0.09 0.54 6.85 -51.93 -0.36 0.19 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.62 7.29 -51.93 -0.38 0.24 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.09 0.45 7.08 -51.93 -0.37 0.08 16 49 H 0.10 0.87 7.05 -51.92 -0.37 0.51 16 50 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -32.43 391.26 -9.00 -41.44 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.19 Total: 0.66 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.73 Total: 1.72 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.07 Total: -47.77 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.25 Total: -18.60 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.43 -9.00 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.247 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds