Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46936 * 269.99440 * 3 2 1 5 5 H 1.48494 * 109.47108 * 29.99646 * 3 2 1 6 6 H 1.48506 * 109.47272 * 149.99568 * 3 2 1 7 7 C 1.37884 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46930 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47108 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00272 * 179.97438 * 12 11 10 14 14 O 1.21349 * 120.00166 * 0.02562 * 13 12 11 15 15 C 1.49456 * 120.00048 * 179.97438 * 13 12 11 16 16 O 1.21345 * 120.00179 * 6.71211 * 15 13 12 17 17 N 1.34779 * 119.99791 * 186.70800 * 15 13 12 18 18 C 1.47080 * 120.88508 * 7.83459 * 17 15 13 19 19 C 1.53690 * 108.27867 * 128.75291 * 18 17 15 20 20 N 1.46908 * 109.25494 * 54.08522 * 19 18 17 21 21 C 1.46899 * 110.99750 * 172.60951 * 20 19 18 22 22 H 1.08997 * 110.43782 * 75.00543 * 21 20 19 23 23 C 1.54804 * 110.48731 * 312.45332 * 21 20 19 24 24 C 1.55232 * 101.99013 * 220.52353 * 23 21 20 25 25 O 1.44378 * 103.56478 * 36.88190 * 24 23 21 26 26 C 1.43753 * 106.97555 * 320.01377 * 25 24 23 27 27 C 1.46897 * 111.26552 * 296.75714 * 20 19 18 28 28 C 1.47081 * 120.88011 * 188.11510 * 17 15 13 29 29 H 0.97002 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47346 * 59.99417 * 9 7 2 31 31 H 1.09002 * 109.46525 * 299.99973 * 9 7 2 32 32 H 1.08995 * 109.46859 * 59.99175 * 10 9 7 33 33 H 1.09000 * 109.46611 * 299.99697 * 10 9 7 34 34 H 1.09000 * 109.47592 * 299.99544 * 11 10 9 35 35 H 1.09007 * 109.47320 * 59.99989 * 11 10 9 36 36 H 0.97008 * 120.00119 * 359.97438 * 12 11 10 37 37 H 1.08998 * 109.62867 * 248.52766 * 18 17 15 38 38 H 1.09004 * 109.62647 * 9.10174 * 18 17 15 39 39 H 1.09001 * 109.64912 * 294.08587 * 19 18 17 40 40 H 1.09000 * 109.44480 * 173.96051 * 19 18 17 41 41 H 1.09002 * 110.91426 * 338.64440 * 23 21 20 42 42 H 1.08997 * 110.90924 * 102.25028 * 23 21 20 43 43 H 1.09006 * 110.51622 * 278.38893 * 24 23 21 44 44 H 1.08999 * 110.64393 * 155.44336 * 24 23 21 45 45 H 1.08998 * 109.87639 * 267.09102 * 26 25 24 46 46 H 1.08998 * 109.87465 * 145.93700 * 26 25 24 47 47 H 1.08998 * 109.49681 * 303.14075 * 27 20 19 48 48 H 1.09001 * 109.51101 * 183.07896 * 27 20 19 49 49 H 1.09009 * 109.62890 * 350.89672 * 28 17 15 50 50 H 1.09002 * 109.63096 * 111.27846 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 7 6.0398 -4.0179 0.0014 13 6 7.3648 -4.2642 0.0010 14 8 8.1534 -3.3420 0.0006 15 6 7.8629 -5.6733 0.0020 16 8 7.0811 -6.5934 -0.1195 17 7 9.1805 -5.9222 0.1379 18 6 10.1243 -4.8400 0.4567 19 6 10.9722 -5.2791 1.6610 20 7 11.5932 -6.5779 1.3685 21 6 12.5498 -6.9524 2.4186 22 1 12.0225 -7.2813 3.3140 23 6 13.4865 -5.7644 2.7469 24 6 14.8577 -6.4722 2.9158 25 8 14.8282 -7.5113 1.9140 26 6 13.4984 -8.0574 1.9147 27 6 10.5786 -7.6239 1.1832 28 6 9.7137 -7.2820 -0.0346 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6801 0.8910 31 1 3.8751 -0.6805 -0.8889 32 1 3.6583 -3.1503 -0.8891 33 1 3.6578 -3.1506 0.8908 34 1 5.9148 -2.1229 -0.8890 35 1 5.9149 -2.1229 0.8910 36 1 5.4094 -4.7553 0.0021 37 1 10.7702 -4.6530 -0.4012 38 1 9.5718 -3.9343 0.7069 39 1 10.3375 -5.3697 2.5425 40 1 11.7495 -4.5379 1.8469 41 1 13.5157 -5.0525 1.9220 42 1 13.1831 -5.2739 3.6717 43 1 14.9449 -6.9030 3.9133 44 1 15.6751 -5.7771 2.7240 45 1 13.4517 -8.9184 2.5815 46 1 13.2188 -8.3534 0.9037 47 1 9.9494 -7.6819 2.0714 48 1 11.0701 -8.5835 1.0225 49 1 8.8896 -7.9917 -0.1094 50 1 10.3181 -7.3262 -0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597257479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -115.390146 kcal Electronic energy + Delta-G solvation = -29442.253177 eV Core-core repulsion = 25276.172794 eV Total energy + Delta-G solvation = -4166.080383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10074 -40.83428 -39.79303 -38.69668 -37.25035 -35.82383 -35.09011 -33.31393 -32.64261 -31.77557 -30.17453 -29.34999 -27.74148 -25.99457 -25.09016 -23.92041 -23.14262 -22.34109 -22.16283 -21.47533 -20.62264 -19.09087 -18.69525 -18.27930 -17.54722 -17.40748 -17.30588 -16.83865 -16.34554 -16.30440 -16.14712 -16.06153 -15.89932 -15.53641 -15.35214 -15.10006 -14.84367 -14.77584 -14.25043 -13.82158 -13.80360 -13.72520 -13.49397 -13.07573 -12.94982 -12.76755 -12.70237 -12.53920 -12.41996 -12.28422 -12.08856 -12.03363 -11.89542 -11.78980 -11.71927 -11.59751 -11.33432 -10.75390 -10.63859 -10.43942 -10.23317 -10.01745 -9.40179 -8.28328 -6.32951 0.24372 1.19212 1.38923 1.40335 1.52071 2.01241 2.32738 2.37671 2.71088 3.02930 3.07492 3.20922 3.44100 3.75514 3.86275 3.98208 4.01144 4.10043 4.15724 4.17461 4.20614 4.25956 4.28562 4.37351 4.46860 4.50214 4.66152 4.68544 4.74181 4.77139 4.81032 4.85137 4.86484 4.87793 4.89686 5.00221 5.02586 5.06496 5.14922 5.31719 5.46882 5.55487 5.65327 5.80646 5.84480 5.95519 6.02695 6.15386 6.28005 6.59660 6.75533 6.84658 7.31825 8.88223 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.001766 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.163464 B =15855.714754 C =16638.465370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.010 4.010 10 C -0.106 4.106 11 C 0.125 3.875 12 N -0.687 5.687 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.509 3.491 16 O -0.545 6.545 17 N -0.581 5.581 18 C 0.081 3.919 19 C 0.043 3.957 20 N -0.533 5.533 21 C 0.050 3.950 22 H 0.063 0.937 23 C -0.150 4.150 24 C 0.044 3.956 25 O -0.402 6.402 26 C 0.055 3.945 27 C 0.046 3.954 28 C 0.111 3.889 29 H 0.266 0.734 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.417 0.583 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.034 0.966 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.035 0.965 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.653 -15.656 6.094 36.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.144 4.144 11 C 0.002 3.998 12 N -0.338 5.338 13 C 0.286 3.714 14 O -0.408 6.408 15 C 0.292 3.708 16 O -0.423 6.423 17 N -0.314 5.314 18 C -0.041 4.041 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.059 4.059 22 H 0.081 0.919 23 C -0.188 4.188 24 C -0.032 4.032 25 O -0.321 6.321 26 C -0.022 4.022 27 C -0.083 4.083 28 C -0.011 4.011 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.052 0.948 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.054 0.946 48 H 0.128 0.872 49 H 0.112 0.888 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 33.073 -15.411 5.465 36.895 hybrid contribution -1.443 0.294 0.732 1.644 sum 31.630 -15.118 6.197 35.601 Atomic orbital electron populations 1.70074 1.08383 1.28152 1.52646 1.26044 0.95620 1.03652 0.94139 0.85649 0.79637 0.78104 0.79212 1.19244 1.21250 1.16523 1.21491 0.92137 0.93164 1.50422 0.94835 1.19455 0.93861 0.94279 0.97225 1.21527 0.92157 0.98487 1.02183 1.21567 0.94434 0.80894 1.02893 1.45944 1.06377 1.10739 1.70770 1.20198 0.83540 0.89545 0.78135 1.90517 1.54080 1.46357 1.49885 1.20074 0.83478 0.89018 0.78255 1.90750 1.55400 1.46082 1.50022 1.48138 1.05439 1.11401 1.66431 1.23012 0.91650 0.91018 0.98389 1.22678 0.97748 0.92123 0.95985 1.62112 1.16553 1.02690 1.44486 1.23095 0.93662 0.96353 0.92762 0.91881 1.23365 0.94391 0.97595 1.03437 1.23716 0.98068 0.89274 0.92159 1.88876 1.30435 1.53595 1.59190 1.23264 0.81257 0.94985 1.02653 1.22495 0.92838 0.96210 0.96723 1.21977 0.97847 0.81981 0.99251 0.92551 0.95524 0.95757 0.91982 0.91864 0.90761 0.90571 0.74568 0.90032 0.85301 0.94807 0.87351 0.89512 0.88639 0.91090 0.87933 0.91227 0.89141 0.94623 0.87225 0.88792 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.00 0.12 5.47 84.66 0.46 0.59 16 3 Si 0.95 43.38 27.47 68.60 1.88 45.27 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 7 C -0.53 -30.09 9.66 25.60 0.25 -29.84 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.11 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.12 3.61 5.67 86.38 0.49 4.10 16 12 N -0.69 -18.08 5.55 -464.42 -2.58 -20.65 16 13 C 0.50 13.26 7.74 87.27 0.68 13.94 16 14 O -0.53 -14.89 13.20 -3.24 -0.04 -14.93 16 15 C 0.51 12.58 7.75 87.27 0.68 13.26 16 16 O -0.54 -15.56 15.96 -3.23 -0.05 -15.61 16 17 N -0.58 -11.39 3.00 -818.62 -2.46 -13.84 16 18 C 0.08 1.38 6.14 86.50 0.53 1.91 16 19 C 0.04 0.56 5.28 86.53 0.46 1.01 16 20 N -0.53 -6.38 4.39 -863.31 -3.79 -10.17 16 21 C 0.05 0.49 2.81 45.91 0.13 0.62 16 22 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 23 C -0.15 -1.23 5.51 31.98 0.18 -1.06 16 24 C 0.04 0.41 7.72 72.75 0.56 0.97 16 25 O -0.40 -6.15 11.52 -148.98 -1.72 -7.87 16 26 C 0.06 0.61 6.92 72.36 0.50 1.11 16 27 C 0.05 0.53 5.43 86.38 0.47 1.00 16 28 C 0.11 1.67 6.61 86.35 0.57 2.24 16 29 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 31 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.42 10.35 7.96 -92.70 -0.74 9.61 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 2.66 4.44 -39.05 -0.17 2.49 16 39 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 1.11 5.90 -2.39 -0.01 1.09 16 41 H 0.09 0.83 6.85 -2.39 -0.02 0.82 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.09 1.03 7.29 -2.39 -0.02 1.02 16 47 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.11 0.85 7.08 -2.39 -0.02 0.84 16 49 H 0.09 1.56 7.05 -2.38 -0.02 1.54 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.16 391.26 -2.23 -72.39 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.01 Total: 18.52 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.23 Total: 5.97 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -8.52 Total: -103.73 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.81 Total: -38.41 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Total: -70.16 -2.23 -72.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.001 kcal (2) G-P(sol) polarization free energy of solvation -70.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds