Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00417 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00069 * 3 2 1 5 5 H 1.48505 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47251 * 119.99496 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47123 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.47115 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00138 * 179.97438 * 12 11 10 14 14 O 1.21345 * 119.99955 * 0.02562 * 13 12 11 15 15 C 1.49454 * 119.99907 * 179.97438 * 13 12 11 16 16 O 1.21347 * 120.00166 * 6.48184 * 15 13 12 17 17 N 1.34777 * 119.99747 * 186.48252 * 15 13 12 18 18 C 1.47079 * 120.87908 * 186.97226 * 17 15 13 19 19 C 1.53243 * 108.52115 * 231.16277 * 18 17 15 20 20 N 1.46896 * 109.33824 * 306.17226 * 19 18 17 21 21 C 1.46901 * 110.99858 * 187.25410 * 20 19 18 22 22 H 1.09003 * 110.75137 * 291.62596 * 21 20 19 23 23 C 1.55303 * 110.85088 * 55.09708 * 21 20 19 24 24 C 1.54940 * 100.98135 * 152.30180 * 23 21 20 25 25 O 1.43691 * 105.11483 * 323.61984 * 24 23 21 26 26 C 1.43239 * 109.99544 * 24.36029 * 25 24 23 27 27 C 1.46896 * 111.27124 * 63.10541 * 20 19 18 28 28 C 1.47085 * 120.88258 * 6.95088 * 17 15 13 29 29 H 0.97001 * 119.99238 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47199 * 60.00063 * 9 7 2 31 31 H 1.08995 * 109.47193 * 299.99924 * 9 7 2 32 32 H 1.09008 * 109.46894 * 60.00475 * 10 9 7 33 33 H 1.09002 * 109.47541 * 300.00784 * 10 9 7 34 34 H 1.08995 * 109.47213 * 60.00414 * 11 10 9 35 35 H 1.09000 * 109.47497 * 299.99751 * 11 10 9 36 36 H 0.97009 * 119.99628 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.62796 * 111.45292 * 18 17 15 38 38 H 1.08997 * 109.78998 * 350.97080 * 18 17 15 39 39 H 1.09002 * 109.49096 * 186.21119 * 19 18 17 40 40 H 1.08997 * 109.49050 * 66.13161 * 19 18 17 41 41 H 1.08994 * 111.13108 * 270.24944 * 23 21 20 42 42 H 1.09011 * 111.12074 * 34.36726 * 23 21 20 43 43 H 1.09006 * 110.30891 * 82.49791 * 24 23 21 44 44 H 1.09005 * 110.31403 * 204.66425 * 24 23 21 45 45 H 1.09000 * 109.83104 * 238.81584 * 26 25 24 46 46 H 1.08997 * 109.90832 * 117.88687 * 26 25 24 47 47 H 1.08997 * 109.49500 * 56.85549 * 27 20 19 48 48 H 1.09001 * 109.49725 * 176.93518 * 27 20 19 49 49 H 1.08989 * 109.62571 * 248.54606 * 28 17 15 50 50 H 1.08999 * 109.62634 * 8.93181 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4321 -6.1007 0.0005 13 6 1.9828 -7.3714 0.0006 14 8 0.7897 -7.5930 -0.0003 15 6 2.9539 -8.5073 0.0007 16 8 4.1419 -8.2900 0.1192 17 7 2.5103 -9.7732 -0.1310 18 6 3.4269 -10.9137 0.0182 19 6 3.2667 -11.8295 -1.1999 20 7 1.8506 -12.1871 -1.3569 21 6 1.6765 -13.1993 -2.4072 22 1 1.8997 -12.7801 -3.3883 23 6 2.5588 -14.4459 -2.1251 24 6 1.7354 -15.5551 -2.8269 25 8 0.3612 -15.2000 -2.6030 26 6 0.2512 -13.7911 -2.3690 27 6 1.0282 -11.0005 -1.6279 28 6 1.0966 -10.0507 -0.4273 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0446 -0.8903 35 1 0.8531 -5.0451 0.8896 36 1 3.3858 -5.9234 0.0008 37 1 3.1807 -11.4650 0.9257 38 1 4.4549 -10.5559 0.0748 39 1 3.8565 -12.7346 -1.0545 40 1 3.6118 -11.3097 -2.0936 41 1 3.5440 -14.3409 -2.5794 42 1 2.6406 -14.6352 -1.0547 43 1 1.9530 -15.5693 -3.8950 44 1 1.9532 -16.5264 -2.3828 45 1 -0.1973 -13.6125 -1.3918 46 1 -0.3606 -13.3325 -3.1459 47 1 1.4044 -10.4922 -2.5156 48 1 -0.0055 -11.3042 -1.7928 49 1 0.6264 -10.5190 0.4373 50 1 0.5824 -9.1192 -0.6639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597257480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -96.509354 kcal Electronic energy + Delta-G solvation = -29328.536546 eV Core-core repulsion = 25163.274896 eV Total energy + Delta-G solvation = -4165.261651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13990 -40.18787 -38.83509 -37.92288 -35.93215 -34.87099 -33.36816 -31.89088 -31.46451 -31.29716 -29.52364 -27.63870 -26.74337 -24.84250 -24.20551 -22.81511 -22.37979 -21.56157 -21.01753 -20.69830 -19.62189 -17.95900 -17.36312 -17.07384 -16.76962 -16.37685 -16.27799 -15.64062 -15.52991 -15.44295 -15.07196 -14.98407 -14.84446 -14.50576 -14.41763 -14.02617 -13.94971 -13.65939 -13.26644 -12.87312 -12.65223 -12.37109 -12.32158 -11.98306 -11.91754 -11.83589 -11.74905 -11.65840 -11.57070 -11.29635 -11.12287 -10.91186 -10.79985 -10.64479 -9.99170 -9.93901 -9.65523 -9.29883 -9.26844 -9.15271 -9.03054 -8.80480 -8.39988 -6.04931 -4.08138 1.32356 2.17914 3.03439 3.13560 3.30853 3.35572 3.37422 3.41930 3.48393 3.83932 4.24946 4.36313 4.41779 4.43708 4.47690 4.55377 4.65577 4.73507 4.77993 4.88985 4.95886 5.13033 5.16343 5.20369 5.26453 5.27672 5.31034 5.40031 5.42432 5.48913 5.52450 5.54521 5.63825 5.74873 5.97113 6.02739 6.28424 6.40316 6.44991 6.49342 6.52267 6.67292 6.84339 6.91351 7.23258 7.58391 7.63411 7.69989 7.92847 7.96955 8.34169 8.98012 9.56326 11.06221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.001643 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.487586 B =17036.373047 C =17567.694668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.688 5.688 13 C 0.502 3.498 14 O -0.518 6.518 15 C 0.510 3.490 16 O -0.523 6.523 17 N -0.587 5.587 18 C 0.113 3.887 19 C 0.042 3.958 20 N -0.527 5.527 21 C 0.048 3.952 22 H 0.059 0.941 23 C -0.151 4.151 24 C 0.053 3.947 25 O -0.383 6.383 26 C 0.060 3.940 27 C 0.037 3.963 28 C 0.077 3.923 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -31.419 -4.410 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.339 5.339 13 C 0.283 3.717 14 O -0.397 6.397 15 C 0.293 3.707 16 O -0.399 6.399 17 N -0.321 5.321 18 C -0.009 4.009 19 C -0.087 4.087 20 N -0.253 5.253 21 C -0.061 4.061 22 H 0.077 0.923 23 C -0.189 4.189 24 C -0.024 4.024 25 O -0.301 6.301 26 C -0.017 4.017 27 C -0.091 4.091 28 C -0.045 4.045 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.322 -31.640 -3.907 32.172 hybrid contribution 1.362 1.443 -0.794 2.137 sum 5.684 -30.196 -4.701 31.084 Atomic orbital electron populations 1.69952 1.06052 1.26845 1.50389 1.25019 0.94868 0.99308 0.95183 0.86630 0.79558 0.83013 0.78627 1.20244 1.21255 1.20215 1.21162 0.93022 0.90901 1.51212 0.92626 1.19026 0.93777 0.90752 0.97724 1.21936 0.99905 0.92946 1.01334 1.21879 0.91719 0.84676 1.02632 1.46124 1.12330 1.04971 1.70425 1.20017 0.88445 0.84526 0.78701 1.90479 1.16429 1.83147 1.49624 1.20290 0.88510 0.84105 0.77844 1.90750 1.16435 1.84151 1.48521 1.47988 1.11145 1.04599 1.68386 1.21810 0.95279 0.85780 0.98063 1.22513 0.89012 0.99355 0.97805 1.62063 1.08034 1.11094 1.44102 1.23221 0.96163 0.92926 0.93768 0.92287 1.23369 0.98966 0.93667 1.02897 1.23335 0.81148 0.98458 0.99479 1.88440 1.25882 1.23115 1.92703 1.23140 0.95505 0.81062 1.02033 1.22630 0.98607 0.90233 0.97619 1.23007 0.80811 1.03120 0.97564 0.92849 0.96203 0.96162 0.92387 0.92446 0.90973 0.90940 0.75247 0.90127 0.88268 0.89048 0.94051 0.89956 0.89037 0.92164 0.89431 0.89807 0.91427 0.94100 0.89053 0.90393 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.11 1.85 5.67 -4.04 -0.02 1.83 16 12 N -0.69 -9.87 5.55 -60.73 -0.34 -10.20 16 13 C 0.50 7.14 7.76 -11.58 -0.09 7.05 16 14 O -0.52 -7.96 13.16 5.50 0.07 -7.89 16 15 C 0.51 6.65 7.75 -11.58 -0.09 6.57 16 16 O -0.52 -7.70 15.96 5.50 0.09 -7.62 16 17 N -0.59 -6.23 3.01 -172.97 -0.52 -6.75 16 18 C 0.11 0.94 6.61 -3.60 -0.02 0.92 16 19 C 0.04 0.28 5.42 -3.70 -0.02 0.26 16 20 N -0.53 -3.72 4.45 -224.02 -1.00 -4.71 16 21 C 0.05 0.30 2.69 -65.77 -0.18 0.12 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 C -0.15 -0.75 5.18 -24.49 -0.13 -0.88 16 24 C 0.05 0.30 7.78 38.18 0.30 0.59 16 25 O -0.38 -3.30 11.36 -35.23 -0.40 -3.71 16 26 C 0.06 0.42 6.45 37.88 0.24 0.66 16 27 C 0.04 0.29 5.51 -3.70 -0.02 0.27 16 28 C 0.08 0.73 6.14 -3.60 -0.02 0.71 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.45 7.96 -40.82 -0.32 5.12 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.88 7.06 -51.93 -0.37 0.51 16 39 H 0.09 0.46 6.62 -51.93 -0.34 0.12 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.30 8.02 -51.93 -0.42 -0.11 16 42 H 0.09 0.49 8.06 -51.92 -0.42 0.07 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.62 8.00 -51.93 -0.42 0.21 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.60 7.21 -51.93 -0.37 0.22 16 49 H 0.08 0.72 8.14 -51.94 -0.42 0.30 16 50 H 0.15 1.67 4.36 -54.65 -0.24 1.43 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -31.63 396.73 -9.50 -41.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.36 Total: 0.25 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.74 Total: 2.87 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.12 Total: -47.30 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.24 Total: -19.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.63 -9.50 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.378 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds