Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00417 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00069 * 3 2 1 5 5 H 1.48505 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47251 * 119.99496 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47123 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.47115 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00138 * 179.97438 * 12 11 10 14 14 O 1.21345 * 119.99955 * 0.02562 * 13 12 11 15 15 C 1.49454 * 119.99907 * 179.97438 * 13 12 11 16 16 O 1.21347 * 120.00166 * 6.48184 * 15 13 12 17 17 N 1.34777 * 119.99747 * 186.48252 * 15 13 12 18 18 C 1.47079 * 120.87908 * 186.97226 * 17 15 13 19 19 C 1.53243 * 108.52115 * 231.16277 * 18 17 15 20 20 N 1.46896 * 109.33824 * 306.17226 * 19 18 17 21 21 C 1.46901 * 110.99858 * 187.25410 * 20 19 18 22 22 H 1.09003 * 110.75137 * 291.62596 * 21 20 19 23 23 C 1.55303 * 110.85088 * 55.09708 * 21 20 19 24 24 C 1.54940 * 100.98135 * 152.30180 * 23 21 20 25 25 O 1.43691 * 105.11483 * 323.61984 * 24 23 21 26 26 C 1.43239 * 109.99544 * 24.36029 * 25 24 23 27 27 C 1.46896 * 111.27124 * 63.10541 * 20 19 18 28 28 C 1.47085 * 120.88258 * 6.95088 * 17 15 13 29 29 H 0.97001 * 119.99238 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47199 * 60.00063 * 9 7 2 31 31 H 1.08995 * 109.47193 * 299.99924 * 9 7 2 32 32 H 1.09008 * 109.46894 * 60.00475 * 10 9 7 33 33 H 1.09002 * 109.47541 * 300.00784 * 10 9 7 34 34 H 1.08995 * 109.47213 * 60.00414 * 11 10 9 35 35 H 1.09000 * 109.47497 * 299.99751 * 11 10 9 36 36 H 0.97009 * 119.99628 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.62796 * 111.45292 * 18 17 15 38 38 H 1.08997 * 109.78998 * 350.97080 * 18 17 15 39 39 H 1.09002 * 109.49096 * 186.21119 * 19 18 17 40 40 H 1.08997 * 109.49050 * 66.13161 * 19 18 17 41 41 H 1.08994 * 111.13108 * 270.24944 * 23 21 20 42 42 H 1.09011 * 111.12074 * 34.36726 * 23 21 20 43 43 H 1.09006 * 110.30891 * 82.49791 * 24 23 21 44 44 H 1.09005 * 110.31403 * 204.66425 * 24 23 21 45 45 H 1.09000 * 109.83104 * 238.81584 * 26 25 24 46 46 H 1.08997 * 109.90832 * 117.88687 * 26 25 24 47 47 H 1.08997 * 109.49500 * 56.85549 * 27 20 19 48 48 H 1.09001 * 109.49725 * 176.93518 * 27 20 19 49 49 H 1.08989 * 109.62571 * 248.54606 * 28 17 15 50 50 H 1.08999 * 109.62634 * 8.93181 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4321 -6.1007 0.0005 13 6 1.9828 -7.3714 0.0006 14 8 0.7897 -7.5930 -0.0003 15 6 2.9539 -8.5073 0.0007 16 8 4.1419 -8.2900 0.1192 17 7 2.5103 -9.7732 -0.1310 18 6 3.4269 -10.9137 0.0182 19 6 3.2667 -11.8295 -1.1999 20 7 1.8506 -12.1871 -1.3569 21 6 1.6765 -13.1993 -2.4072 22 1 1.8997 -12.7801 -3.3883 23 6 2.5588 -14.4459 -2.1251 24 6 1.7354 -15.5551 -2.8269 25 8 0.3612 -15.2000 -2.6030 26 6 0.2512 -13.7911 -2.3690 27 6 1.0282 -11.0005 -1.6279 28 6 1.0966 -10.0507 -0.4273 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0446 -0.8903 35 1 0.8531 -5.0451 0.8896 36 1 3.3858 -5.9234 0.0008 37 1 3.1807 -11.4650 0.9257 38 1 4.4549 -10.5559 0.0748 39 1 3.8565 -12.7346 -1.0545 40 1 3.6118 -11.3097 -2.0936 41 1 3.5440 -14.3409 -2.5794 42 1 2.6406 -14.6352 -1.0547 43 1 1.9530 -15.5693 -3.8950 44 1 1.9532 -16.5264 -2.3828 45 1 -0.1973 -13.6125 -1.3918 46 1 -0.3606 -13.3325 -3.1459 47 1 1.4044 -10.4922 -2.5156 48 1 -0.0055 -11.3042 -1.7928 49 1 0.6264 -10.5190 0.4373 50 1 0.5824 -9.1192 -0.6639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597257480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -119.726309 kcal Electronic energy + Delta-G solvation = -29329.543309 eV Core-core repulsion = 25163.274896 eV Total energy + Delta-G solvation = -4166.268413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10730 -40.82958 -39.80821 -38.74389 -37.23526 -35.84163 -35.12943 -33.05887 -32.50940 -32.05810 -30.07972 -29.07251 -27.81448 -25.95311 -25.14144 -24.14248 -22.89362 -22.39319 -22.33036 -21.62850 -20.63798 -18.90822 -18.46992 -18.29236 -17.66064 -17.39809 -17.34768 -16.76889 -16.43547 -16.29475 -16.13086 -16.00964 -15.94802 -15.45537 -15.28017 -15.16340 -14.86583 -14.29979 -14.27523 -14.06539 -13.80605 -13.66316 -13.46178 -13.21978 -12.99979 -12.73472 -12.60036 -12.52900 -12.44986 -12.40335 -12.26589 -12.07271 -11.99991 -11.75895 -11.69245 -11.51919 -11.23344 -10.53950 -10.51206 -10.43375 -10.24391 -10.03851 -9.44652 -8.19193 -6.30105 0.24098 1.18509 1.42361 1.44638 1.52561 2.01047 2.29931 2.42847 2.64065 2.99409 3.14722 3.20522 3.37690 3.75793 3.86198 3.94578 4.03437 4.07537 4.15015 4.18257 4.19627 4.26195 4.26847 4.35255 4.48122 4.52579 4.68083 4.71501 4.74197 4.78140 4.80281 4.83966 4.90919 4.91621 4.92869 5.03245 5.10494 5.13856 5.15921 5.34767 5.51705 5.71020 5.79099 5.84563 5.85379 5.96598 6.03211 6.14057 6.23965 6.60450 6.85043 6.86639 7.39236 8.92285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.001643 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.487586 B =17036.373047 C =17567.694668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.128 3.872 12 N -0.684 5.684 13 C 0.502 3.498 14 O -0.531 6.531 15 C 0.511 3.489 16 O -0.543 6.543 17 N -0.580 5.580 18 C 0.110 3.890 19 C 0.047 3.953 20 N -0.528 5.528 21 C 0.050 3.950 22 H 0.061 0.939 23 C -0.143 4.143 24 C 0.047 3.953 25 O -0.409 6.409 26 C 0.059 3.941 27 C 0.043 3.957 28 C 0.078 3.922 29 H 0.263 0.737 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.418 0.582 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.034 0.966 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -32.706 -4.678 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.005 3.995 12 N -0.336 5.336 13 C 0.284 3.716 14 O -0.411 6.411 15 C 0.294 3.706 16 O -0.421 6.421 17 N -0.313 5.313 18 C -0.011 4.011 19 C -0.081 4.081 20 N -0.254 5.254 21 C -0.058 4.058 22 H 0.078 0.922 23 C -0.181 4.181 24 C -0.030 4.030 25 O -0.328 6.328 26 C -0.018 4.018 27 C -0.085 4.085 28 C -0.043 4.043 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.256 0.744 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.121 0.879 49 H 0.101 0.899 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.007 -32.974 -4.180 33.777 hybrid contribution 0.781 1.739 -0.714 2.035 sum 6.788 -31.236 -4.895 32.337 Atomic orbital electron populations 1.70089 1.07760 1.27816 1.51506 1.25961 0.95746 1.03325 0.94766 0.85512 0.78243 0.78198 0.79152 1.19204 1.21051 1.19217 1.21659 0.93704 0.92201 1.50719 0.91833 1.18928 0.94338 0.92514 0.95482 1.21644 0.98653 0.92004 1.02155 1.21494 0.91512 0.84333 1.02171 1.45933 1.12295 1.04646 1.70725 1.20291 0.88557 0.84692 0.78099 1.90503 1.17119 1.83481 1.49957 1.19989 0.87847 0.84497 0.78284 1.90742 1.16840 1.84445 1.50046 1.48126 1.11993 1.04388 1.66807 1.22009 0.94561 0.85103 0.99446 1.22508 0.89100 0.99865 0.96629 1.62050 1.08076 1.10767 1.44528 1.23205 0.96077 0.93051 0.93502 0.92153 1.23345 0.99392 0.92439 1.02924 1.23519 0.79986 0.99201 1.00251 1.88410 1.27728 1.23810 1.92862 1.23146 0.96112 0.80733 1.01815 1.22546 0.99546 0.90167 0.96250 1.22943 0.80055 1.02767 0.98573 0.92804 0.98431 0.98491 0.91584 0.91498 0.91397 0.91614 0.74432 0.88943 0.88617 0.86701 0.94738 0.88182 0.89125 0.91364 0.88415 0.90423 0.91129 0.94751 0.87871 0.89876 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.27 4.97 29.85 0.15 1.42 16 10 C -0.11 -4.02 5.27 30.59 0.16 -3.85 16 11 C 0.13 4.19 5.67 86.38 0.49 4.68 16 12 N -0.68 -19.30 5.55 -464.40 -2.58 -21.88 16 13 C 0.50 14.10 7.76 87.27 0.68 14.78 16 14 O -0.53 -16.31 13.16 -3.23 -0.04 -16.35 16 15 C 0.51 13.00 7.75 87.27 0.68 13.67 16 16 O -0.54 -15.56 15.96 -3.24 -0.05 -15.61 16 17 N -0.58 -11.67 3.01 -819.51 -2.47 -14.14 16 18 C 0.11 1.64 6.61 86.35 0.57 2.21 16 19 C 0.05 0.53 5.42 86.39 0.47 1.00 16 20 N -0.53 -6.42 4.45 -862.68 -3.84 -10.25 16 21 C 0.05 0.53 2.69 46.18 0.12 0.65 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 C -0.14 -1.06 5.18 32.05 0.17 -0.90 16 24 C 0.05 0.44 7.78 72.65 0.57 1.00 16 25 O -0.41 -6.60 11.36 -148.98 -1.69 -8.29 16 26 C 0.06 0.76 6.45 72.45 0.47 1.23 16 27 C 0.04 0.61 5.51 86.38 0.48 1.09 16 28 C 0.08 1.42 6.14 86.35 0.53 1.95 16 29 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.42 10.71 7.96 -92.70 -0.74 9.97 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.54 7.06 -2.39 -0.02 1.52 16 39 H 0.11 0.79 6.62 -2.39 -0.02 0.77 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.41 8.02 -2.39 -0.02 0.39 16 42 H 0.09 0.72 8.06 -2.38 -0.02 0.70 16 43 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.08 1.08 8.00 -2.39 -0.02 1.06 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.10 1.22 7.21 -2.39 -0.02 1.20 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.13 2.91 4.36 -45.41 -0.20 2.71 16 Total: -1.00 -67.83 396.73 -2.13 -69.96 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.01 Total: 17.16 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.22 Total: 9.51 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -8.60 Total: -101.94 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.79 Total: -40.25 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.83 -2.13 -69.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.768 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds