Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99974 * 2 1 4 4 H 1.48499 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47203 * 299.99785 * 3 2 1 6 6 H 1.48502 * 109.46920 * 59.99831 * 3 2 1 7 7 C 1.37873 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47458 * 185.20365 * 9 7 2 11 11 C 1.46902 * 110.99816 * 285.95358 * 10 9 7 12 12 C 1.53241 * 109.33849 * 187.25008 * 11 10 9 13 13 N 1.47075 * 108.52567 * 306.17008 * 12 11 10 14 14 C 1.34774 * 120.88365 * 231.18567 * 13 12 11 15 15 O 1.21344 * 120.00163 * 187.11361 * 14 13 12 16 16 C 1.49449 * 119.99943 * 7.12423 * 14 13 12 17 17 O 1.21353 * 120.00258 * 7.17207 * 16 14 13 18 18 N 1.34777 * 120.00111 * 187.18135 * 16 14 13 19 19 C 1.46927 * 120.63138 * 176.46575 * 18 16 14 20 20 C 1.53195 * 108.77265 * 233.58459 * 19 18 16 21 21 C 1.53037 * 109.31271 * 305.36436 * 20 19 18 22 22 C 1.53003 * 109.46040 * 181.38924 * 21 20 19 23 23 O 1.42901 * 109.47421 * 64.93167 * 22 21 20 24 24 C 1.53036 * 109.53889 * 61.36500 * 21 20 19 25 25 C 1.46926 * 120.62898 * 356.43981 * 18 16 14 26 26 C 1.47077 * 118.23623 * 51.45540 * 13 12 11 27 27 C 1.46907 * 111.00091 * 50.25327 * 10 9 7 28 28 H 0.97005 * 120.00130 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47439 * 65.19934 * 9 7 2 30 30 H 1.09003 * 109.46850 * 305.20161 * 9 7 2 31 31 H 1.09001 * 109.49435 * 67.29666 * 11 10 9 32 32 H 1.08996 * 109.49206 * 307.20836 * 11 10 9 33 33 H 1.09006 * 109.62634 * 186.45736 * 12 11 10 34 34 H 1.09004 * 109.62705 * 65.88486 * 12 11 10 35 35 H 1.08994 * 109.58637 * 353.36584 * 19 18 16 36 36 H 1.08995 * 109.58749 * 113.79886 * 19 18 16 37 37 H 1.09001 * 109.50029 * 65.31663 * 20 19 18 38 38 H 1.09004 * 109.49790 * 185.41368 * 20 19 18 39 39 H 1.09004 * 109.45878 * 301.34236 * 21 20 19 40 40 H 1.09000 * 109.47076 * 184.92905 * 22 21 20 41 41 H 1.08996 * 109.47206 * 304.92789 * 22 21 20 42 42 H 0.96693 * 114.00125 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.49777 * 178.68068 * 24 21 20 44 44 H 1.08996 * 109.52594 * 58.60637 * 24 21 20 45 45 H 1.08998 * 109.58637 * 246.20442 * 25 18 16 46 46 H 1.09004 * 109.58821 * 6.48539 * 25 18 16 47 47 H 1.08999 * 109.63130 * 68.25502 * 26 13 12 48 48 H 1.09000 * 109.63467 * 188.83434 * 26 13 12 49 49 H 1.09003 * 109.49105 * 292.70602 * 27 10 9 50 50 H 1.08997 * 109.49253 * 52.78551 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2006 -3.6128 0.1268 11 6 2.9311 -3.8267 -1.1297 12 6 3.7736 -5.1017 -1.0161 13 7 4.6175 -4.9987 0.1840 14 6 5.9457 -5.2174 0.1166 15 8 6.6067 -5.2558 1.1335 16 6 6.6045 -5.4123 -1.2106 17 8 5.9717 -5.2453 -2.2325 18 7 7.9014 -5.7737 -1.2726 19 6 8.5421 -6.0442 -2.5669 20 6 9.1887 -7.4321 -2.5164 21 6 10.1376 -7.5051 -1.3179 22 6 10.8115 -8.8783 -1.2842 23 8 11.6432 -9.0292 -2.4364 24 6 9.3464 -7.2935 -0.0251 25 6 8.7015 -5.9042 -0.0473 26 6 3.9727 -4.6566 1.4609 27 6 3.1232 -3.3934 1.2488 28 1 -0.4850 0.8401 -0.0004 29 1 0.6964 -2.5986 -0.9325 30 1 0.5560 -2.5174 0.8400 31 1 3.5841 -2.9751 -1.3204 32 1 2.2209 -3.9320 -1.9499 33 1 4.4041 -5.2038 -1.8995 34 1 3.1174 -5.9677 -0.9291 35 1 7.7927 -6.0189 -3.3579 36 1 9.3065 -5.2918 -2.7605 37 1 8.4133 -8.1912 -2.4133 38 1 9.7490 -7.6061 -3.4351 39 1 10.8982 -6.7297 -1.4092 40 1 11.4197 -8.9625 -0.3836 41 1 10.0491 -9.6572 -1.2819 42 1 12.1033 -9.8784 -2.4809 43 1 10.0189 -7.3689 0.8294 44 1 8.5696 -8.0539 0.0552 45 1 9.4790 -5.1403 -0.0355 46 1 8.0578 -5.7838 0.8241 47 1 3.3353 -5.4806 1.7815 48 1 4.7348 -4.4643 2.2161 49 1 3.7735 -2.5478 1.0249 50 1 2.5524 -3.1843 2.1534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -74.856946 kcal Electronic energy + Delta-G solvation = -30819.705189 eV Core-core repulsion = 26655.382457 eV Total energy + Delta-G solvation = -4164.322732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.21598 -39.34980 -38.24012 -37.75306 -36.69275 -34.59119 -33.31267 -32.31206 -31.44462 -30.64884 -28.56944 -27.79876 -25.78028 -24.74302 -23.54910 -23.31449 -22.59323 -21.80340 -20.86065 -19.87414 -19.01774 -17.76863 -17.18741 -17.03618 -16.37322 -16.29789 -15.90356 -15.57152 -15.00282 -14.83299 -14.72427 -14.67002 -14.41463 -14.19809 -14.01372 -13.82818 -13.64343 -13.40132 -13.01016 -12.79537 -12.66433 -12.52265 -12.23697 -11.86999 -11.66276 -11.49502 -11.26100 -11.17124 -11.09745 -11.04243 -10.89833 -10.75832 -10.60137 -10.37173 -10.35336 -10.08205 -9.78537 -9.62938 -8.97972 -8.76980 -8.56904 -8.46016 -7.24789 -6.06299 -4.15460 1.37036 2.25243 3.15778 3.24775 3.33158 3.35115 3.37084 3.77287 4.09796 4.34059 4.38320 4.43543 4.67396 4.81887 4.94238 4.98612 5.01435 5.08236 5.17151 5.24053 5.24614 5.37614 5.47484 5.51972 5.53284 5.60399 5.65369 5.65933 5.75698 5.80309 5.82258 5.93487 6.01402 6.02417 6.10469 6.38379 6.47971 6.64042 6.67595 6.72571 6.94045 7.18312 7.20169 7.38624 7.49354 7.71819 7.86212 7.94856 7.99205 8.20216 8.25900 8.94538 9.51861 10.98861 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.002388 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.463162 B =11720.879499 C =11952.877421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.187 3.813 10 N -0.543 5.543 11 C 0.052 3.948 12 C 0.054 3.946 13 N -0.563 5.563 14 C 0.507 3.493 15 O -0.525 6.525 16 C 0.512 3.488 17 O -0.508 6.508 18 N -0.579 5.579 19 C 0.105 3.895 20 C -0.123 4.123 21 C -0.091 4.091 22 C 0.080 3.920 23 O -0.574 6.574 24 C -0.125 4.125 25 C 0.045 3.955 26 C 0.108 3.892 27 C 0.053 3.947 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.166 0.834 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.186 -18.714 -1.491 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.061 3.939 10 N -0.267 5.267 11 C -0.077 4.077 12 C -0.067 4.067 13 N -0.293 5.293 14 C 0.291 3.709 15 O -0.406 6.406 16 C 0.296 3.704 17 O -0.386 6.386 18 N -0.312 5.312 19 C -0.017 4.017 20 C -0.161 4.161 21 C -0.110 4.110 22 C 0.003 3.997 23 O -0.379 6.379 24 C -0.163 4.163 25 C -0.075 4.075 26 C -0.013 4.013 27 C -0.076 4.076 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.225 0.775 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.182 0.818 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.492 -18.336 -1.534 26.805 hybrid contribution 1.103 1.238 -0.064 1.659 sum 20.596 -17.098 -1.598 26.816 Atomic orbital electron populations 1.69948 1.05985 1.26775 1.50081 1.24959 0.94773 0.99179 0.94844 0.86592 0.80131 0.83928 0.77701 1.19901 1.20905 1.20881 1.21774 0.93328 0.92060 1.51768 0.92485 1.19780 0.90774 0.85401 0.97915 1.62532 1.16872 1.44706 1.02629 1.22223 0.96346 0.95334 0.93819 1.23461 0.94950 0.99012 0.89306 1.48163 1.05464 1.63717 1.11965 1.19936 0.83165 0.78783 0.89055 1.90200 1.61082 1.52600 1.36730 1.20218 0.82444 0.77923 0.89846 1.90364 1.61137 1.50555 1.36530 1.48029 1.09199 1.65154 1.08822 1.21774 0.97782 0.96645 0.85520 1.21895 0.98471 0.96663 0.99056 1.21209 0.97344 0.96707 0.95726 1.22239 0.92765 0.97185 0.87555 1.86473 1.64247 1.41666 1.45511 1.21887 0.99485 0.98131 0.96811 1.23403 0.97742 0.95977 0.90401 1.22202 0.96190 0.98656 0.84293 1.22321 0.94831 0.94150 0.96325 0.92822 0.95414 0.94477 0.94278 0.90335 0.83474 0.91399 0.88545 0.90983 0.91605 0.89789 0.90226 0.93573 0.93635 0.77486 0.90418 0.91397 0.91608 0.81837 0.90610 0.89246 0.93531 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.55 -15.01 7.83 -34.44 -0.27 -15.28 16 8 H 0.06 1.57 5.91 -52.49 -0.31 1.26 16 9 C 0.19 4.73 5.20 -4.98 -0.03 4.70 16 10 N -0.54 -11.39 4.83 -235.46 -1.14 -12.53 16 11 C 0.05 1.00 5.37 -3.70 -0.02 0.98 16 12 C 0.05 0.86 6.45 -3.60 -0.02 0.84 16 13 N -0.56 -9.03 3.00 -172.69 -0.52 -9.55 16 14 C 0.51 7.77 7.67 -11.59 -0.09 7.68 16 15 O -0.53 -8.12 12.51 5.50 0.07 -8.05 16 16 C 0.51 7.33 7.65 -11.59 -0.09 7.24 16 17 O -0.51 -8.06 12.56 5.49 0.07 -7.99 16 18 N -0.58 -6.74 2.97 -173.28 -0.51 -7.26 16 19 C 0.10 1.03 6.42 -3.71 -0.02 1.00 16 20 C -0.12 -1.02 5.27 -26.61 -0.14 -1.16 16 21 C -0.09 -0.69 2.39 -90.58 -0.22 -0.90 16 22 C 0.08 0.51 6.43 37.16 0.24 0.75 16 23 O -0.57 -3.97 13.17 -35.23 -0.46 -4.44 16 24 C -0.12 -0.97 5.36 -26.62 -0.14 -1.11 16 25 C 0.05 0.46 6.26 -3.71 -0.02 0.43 16 26 C 0.11 1.72 6.60 -3.37 -0.02 1.70 16 27 C 0.05 1.02 4.99 -3.46 -0.02 1.00 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.03 0.74 7.89 -51.93 -0.41 0.33 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.84 7.52 -51.93 -0.39 0.45 16 32 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 33 H 0.15 2.38 3.83 -56.49 -0.22 2.16 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.02 7.02 -51.93 -0.36 0.66 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.38 0.98 9.12 45.56 0.42 1.40 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.17 1.97 3.74 -57.10 -0.21 1.76 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.09 1.34 7.12 -51.93 -0.37 0.98 16 49 H 0.05 1.01 6.36 -51.93 -0.33 0.68 16 50 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -31.38 382.75 -9.19 -40.56 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.21 Total: 2.60 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.96 Total: 9.60 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -1.43 Total: -54.57 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.33 Total: -20.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.38 -9.19 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.294 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds