Wall clock time and date at job start Sat Apr 11 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99974 * 2 1 4 4 H 1.48499 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47203 * 299.99785 * 3 2 1 6 6 H 1.48502 * 109.46920 * 59.99831 * 3 2 1 7 7 C 1.37873 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47458 * 185.20365 * 9 7 2 11 11 C 1.46902 * 110.99816 * 285.95358 * 10 9 7 12 12 C 1.53241 * 109.33849 * 187.25008 * 11 10 9 13 13 N 1.47075 * 108.52567 * 306.17008 * 12 11 10 14 14 C 1.34774 * 120.88365 * 231.18567 * 13 12 11 15 15 O 1.21344 * 120.00163 * 187.11361 * 14 13 12 16 16 C 1.49449 * 119.99943 * 7.12423 * 14 13 12 17 17 O 1.21353 * 120.00258 * 7.17207 * 16 14 13 18 18 N 1.34777 * 120.00111 * 187.18135 * 16 14 13 19 19 C 1.46927 * 120.63138 * 176.46575 * 18 16 14 20 20 C 1.53195 * 108.77265 * 233.58459 * 19 18 16 21 21 C 1.53037 * 109.31271 * 305.36436 * 20 19 18 22 22 C 1.53003 * 109.46040 * 181.38924 * 21 20 19 23 23 O 1.42901 * 109.47421 * 64.93167 * 22 21 20 24 24 C 1.53036 * 109.53889 * 61.36500 * 21 20 19 25 25 C 1.46926 * 120.62898 * 356.43981 * 18 16 14 26 26 C 1.47077 * 118.23623 * 51.45540 * 13 12 11 27 27 C 1.46907 * 111.00091 * 50.25327 * 10 9 7 28 28 H 0.97005 * 120.00130 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47439 * 65.19934 * 9 7 2 30 30 H 1.09003 * 109.46850 * 305.20161 * 9 7 2 31 31 H 1.09001 * 109.49435 * 67.29666 * 11 10 9 32 32 H 1.08996 * 109.49206 * 307.20836 * 11 10 9 33 33 H 1.09006 * 109.62634 * 186.45736 * 12 11 10 34 34 H 1.09004 * 109.62705 * 65.88486 * 12 11 10 35 35 H 1.08994 * 109.58637 * 353.36584 * 19 18 16 36 36 H 1.08995 * 109.58749 * 113.79886 * 19 18 16 37 37 H 1.09001 * 109.50029 * 65.31663 * 20 19 18 38 38 H 1.09004 * 109.49790 * 185.41368 * 20 19 18 39 39 H 1.09004 * 109.45878 * 301.34236 * 21 20 19 40 40 H 1.09000 * 109.47076 * 184.92905 * 22 21 20 41 41 H 1.08996 * 109.47206 * 304.92789 * 22 21 20 42 42 H 0.96693 * 114.00125 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.49777 * 178.68068 * 24 21 20 44 44 H 1.08996 * 109.52594 * 58.60637 * 24 21 20 45 45 H 1.08998 * 109.58637 * 246.20442 * 25 18 16 46 46 H 1.09004 * 109.58821 * 6.48539 * 25 18 16 47 47 H 1.08999 * 109.63130 * 68.25502 * 26 13 12 48 48 H 1.09000 * 109.63467 * 188.83434 * 26 13 12 49 49 H 1.09003 * 109.49105 * 292.70602 * 27 10 9 50 50 H 1.08997 * 109.49253 * 52.78551 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2006 -3.6128 0.1268 11 6 2.9311 -3.8267 -1.1297 12 6 3.7736 -5.1017 -1.0161 13 7 4.6175 -4.9987 0.1840 14 6 5.9457 -5.2174 0.1166 15 8 6.6067 -5.2558 1.1335 16 6 6.6045 -5.4123 -1.2106 17 8 5.9717 -5.2453 -2.2325 18 7 7.9014 -5.7737 -1.2726 19 6 8.5421 -6.0442 -2.5669 20 6 9.1887 -7.4321 -2.5164 21 6 10.1376 -7.5051 -1.3179 22 6 10.8115 -8.8783 -1.2842 23 8 11.6432 -9.0292 -2.4364 24 6 9.3464 -7.2935 -0.0251 25 6 8.7015 -5.9042 -0.0473 26 6 3.9727 -4.6566 1.4609 27 6 3.1232 -3.3934 1.2488 28 1 -0.4850 0.8401 -0.0004 29 1 0.6964 -2.5986 -0.9325 30 1 0.5560 -2.5174 0.8400 31 1 3.5841 -2.9751 -1.3204 32 1 2.2209 -3.9320 -1.9499 33 1 4.4041 -5.2038 -1.8995 34 1 3.1174 -5.9677 -0.9291 35 1 7.7927 -6.0189 -3.3579 36 1 9.3065 -5.2918 -2.7605 37 1 8.4133 -8.1912 -2.4133 38 1 9.7490 -7.6061 -3.4351 39 1 10.8982 -6.7297 -1.4092 40 1 11.4197 -8.9625 -0.3836 41 1 10.0491 -9.6572 -1.2819 42 1 12.1033 -9.8784 -2.4809 43 1 10.0189 -7.3689 0.8294 44 1 8.5696 -8.0539 0.0552 45 1 9.4790 -5.1403 -0.0355 46 1 8.0578 -5.7838 0.8241 47 1 3.3353 -5.4806 1.7815 48 1 4.7348 -4.4643 2.2161 49 1 3.7735 -2.5478 1.0249 50 1 2.5524 -3.1843 2.1534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601424283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:51 Heat of formation + Delta-G solvation = -99.052051 kcal Electronic energy + Delta-G solvation = -30820.754367 eV Core-core repulsion = 26655.382457 eV Total energy + Delta-G solvation = -4165.371910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33485 -40.42012 -39.21198 -39.09595 -37.41747 -36.09174 -34.42029 -34.04761 -32.29758 -31.98650 -30.16646 -28.72413 -27.39704 -26.02518 -24.63456 -24.39657 -23.97004 -23.07023 -21.95868 -20.91514 -20.27803 -18.64978 -18.40330 -18.16944 -17.91809 -17.46465 -17.07418 -16.72637 -16.22065 -16.05650 -15.91175 -15.86062 -15.54924 -15.40435 -15.26576 -15.01020 -14.76988 -14.58445 -14.27432 -13.83435 -13.79618 -13.58162 -13.39802 -13.25693 -13.06124 -12.92301 -12.77473 -12.53705 -12.47441 -12.29031 -12.17133 -12.02658 -11.83962 -11.72595 -11.69002 -11.50999 -11.01128 -10.82352 -10.64272 -10.04784 -9.87272 -9.80454 -9.08178 -8.19433 -6.38287 0.21010 1.16769 1.32263 1.34195 1.45184 1.99890 2.25215 2.33779 2.98046 3.05681 3.30971 3.33263 3.72538 3.76995 3.95287 4.02946 4.07577 4.19241 4.27279 4.28827 4.33310 4.37367 4.50312 4.53954 4.55920 4.61111 4.65391 4.74318 4.80747 4.85203 4.91580 4.95111 5.00413 5.02338 5.05032 5.10563 5.15963 5.20758 5.30514 5.33216 5.40367 5.55700 5.70771 5.86889 5.99018 6.14089 6.24762 6.43712 6.60000 6.80993 6.82615 6.93430 7.33015 8.83328 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.002388 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.463162 B =11720.879499 C =11952.877421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.199 3.801 10 N -0.538 5.538 11 C 0.055 3.945 12 C 0.069 3.931 13 N -0.573 5.573 14 C 0.507 3.493 15 O -0.526 6.526 16 C 0.507 3.493 17 O -0.530 6.530 18 N -0.570 5.570 19 C 0.102 3.898 20 C -0.115 4.115 21 C -0.090 4.090 22 C 0.082 3.918 23 O -0.593 6.593 24 C -0.117 4.117 25 C 0.042 3.958 26 C 0.121 3.879 27 C 0.056 3.944 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.396 0.604 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.150 0.850 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.019 0.981 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.600 -19.905 -1.166 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.073 3.927 10 N -0.261 5.261 11 C -0.074 4.074 12 C -0.052 4.052 13 N -0.304 5.304 14 C 0.291 3.709 15 O -0.406 6.406 16 C 0.291 3.709 17 O -0.410 6.410 18 N -0.302 5.302 19 C -0.019 4.019 20 C -0.153 4.153 21 C -0.109 4.109 22 C 0.005 3.995 23 O -0.401 6.401 24 C -0.155 4.155 25 C -0.078 4.078 26 C -0.001 4.001 27 C -0.074 4.074 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.246 0.754 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.166 0.834 47 H 0.113 0.887 48 H 0.119 0.881 49 H 0.037 0.963 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.966 -19.566 -1.194 29.440 hybrid contribution 0.442 1.565 -0.168 1.634 sum 22.407 -18.001 -1.362 28.775 Atomic orbital electron populations 1.70051 1.07345 1.27839 1.50903 1.25764 0.95626 1.02654 0.94538 0.85562 0.78666 0.79737 0.78028 1.19811 1.20291 1.19986 1.21963 0.93097 0.93113 1.51395 0.93131 1.19457 0.91147 0.86431 0.95714 1.62476 1.17248 1.42396 1.04019 1.22243 0.96072 0.96146 0.92980 1.23325 0.94692 0.97371 0.89856 1.48212 1.05945 1.64436 1.11772 1.20156 0.82787 0.78329 0.89600 1.90242 1.61045 1.52320 1.37037 1.20075 0.83322 0.78484 0.89066 1.90339 1.61840 1.52042 1.36768 1.48166 1.08402 1.63436 1.10184 1.21924 0.97659 0.98084 0.84248 1.21823 0.98403 0.95248 0.99790 1.21186 0.97026 0.97703 0.94963 1.22201 0.93068 0.96276 0.87995 1.86419 1.64582 1.43324 1.45814 1.21821 0.99622 0.96214 0.97821 1.23418 0.97400 0.97989 0.88958 1.22070 0.96138 0.97263 0.84638 1.22317 0.94325 0.95333 0.95380 0.92507 0.97519 0.96775 0.97074 0.90315 0.82984 0.89771 0.89536 0.89926 0.91995 0.89435 0.90506 0.92172 0.93140 0.75411 0.88438 0.91676 0.90660 0.83399 0.88725 0.88106 0.96254 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.79 5.46 84.65 0.46 1.26 16 3 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.56 -31.17 7.83 25.60 0.20 -30.97 16 8 H 0.05 2.86 5.91 -2.91 -0.02 2.84 16 9 C 0.20 10.45 5.20 85.56 0.45 10.89 16 10 N -0.54 -23.00 4.83 -898.86 -4.34 -27.34 16 11 C 0.05 2.15 5.37 86.38 0.46 2.61 16 12 C 0.07 2.16 6.45 86.35 0.56 2.72 16 13 N -0.57 -17.85 3.00 -818.64 -2.46 -20.30 16 14 C 0.51 15.02 7.67 87.27 0.67 15.69 16 15 O -0.53 -15.53 12.51 -3.23 -0.04 -15.57 16 16 C 0.51 14.10 7.65 87.27 0.67 14.77 16 17 O -0.53 -16.59 12.56 -3.25 -0.04 -16.63 16 18 N -0.57 -12.52 2.97 -820.49 -2.44 -14.95 16 19 C 0.10 1.86 6.42 86.36 0.55 2.42 16 20 C -0.11 -1.68 5.27 30.67 0.16 -1.52 16 21 C -0.09 -1.13 2.39 -10.77 -0.03 -1.16 16 22 C 0.08 0.81 6.43 71.98 0.46 1.27 16 23 O -0.59 -6.75 13.17 -148.98 -1.96 -8.71 16 24 C -0.12 -1.51 5.36 30.67 0.16 -1.35 16 25 C 0.04 0.78 6.26 86.36 0.54 1.32 16 26 C 0.12 3.69 6.60 86.50 0.57 4.26 16 27 C 0.06 2.16 4.99 86.54 0.43 2.59 16 28 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 29 H 0.01 0.37 7.89 -2.39 -0.02 0.35 16 30 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.01 0.49 7.52 -2.39 -0.02 0.47 16 32 H 0.08 3.04 7.95 -2.39 -0.02 3.02 16 33 H 0.15 4.84 3.83 -74.69 -0.29 4.56 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.09 1.78 7.02 -2.39 -0.02 1.76 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.26 7.79 -2.38 -0.02 1.24 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.40 1.10 9.12 -74.06 -0.68 0.42 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.15 3.31 3.74 -84.30 -0.31 3.00 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.10 2.88 7.12 -2.39 -0.02 2.86 16 49 H 0.02 0.85 6.36 -2.39 -0.02 0.84 16 50 H 0.08 3.12 8.11 -2.39 -0.02 3.10 16 Total: -1.00 -67.73 382.75 -2.94 -70.67 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.30 Total: 15.86 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.33 Total: 24.79 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -8.95 Total: -117.08 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.04 Total: -40.91 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.73 -2.94 -70.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.377 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds