Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.99601 * 2 1 4 4 O 1.42898 * 109.47239 * 300.36363 * 3 2 1 5 5 C 1.54322 * 109.88873 * 121.09928 * 2 1 3 6 6 C 1.55157 * 102.93963 * 97.22358 * 5 2 1 7 7 C 1.54689 * 101.67775 * 35.34072 * 6 5 2 8 8 N 1.47026 * 109.87931 * 238.91234 * 2 1 3 9 9 C 1.34771 * 125.65152 * 59.48279 * 8 2 1 10 10 O 1.21358 * 119.99900 * 0.02562 * 9 8 2 11 11 C 1.49449 * 120.00133 * 180.27695 * 9 8 2 12 12 O 1.21347 * 119.99977 * 352.98163 * 11 9 8 13 13 N 1.34773 * 119.99983 * 172.98852 * 11 9 8 14 14 C 1.47086 * 120.88017 * 181.21662 * 13 11 9 15 15 C 1.53691 * 108.27479 * 128.75144 * 14 13 11 16 16 N 1.46904 * 109.25935 * 54.08585 * 15 14 13 17 17 C 1.46898 * 111.00174 * 172.60736 * 16 15 14 18 18 C 1.50704 * 109.47455 * 59.76801 * 17 16 15 19 19 H 1.07999 * 119.99860 * 355.26202 * 18 17 16 20 20 C 1.37870 * 120.00004 * 175.25959 * 18 17 16 21 21 N 1.31510 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47031 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47137 * 119.99929 * 22 20 18 25 25 H 1.48497 * 109.47310 * 240.00523 * 22 20 18 26 26 C 1.46905 * 111.26522 * 296.75265 * 16 15 14 27 27 C 1.47081 * 120.88546 * 1.49092 * 13 11 9 28 28 H 1.09001 * 109.46767 * 179.64312 * 1 2 3 29 29 H 1.09010 * 109.46692 * 299.63352 * 1 2 3 30 30 H 1.08992 * 109.48032 * 59.63764 * 1 2 3 31 31 H 1.08999 * 109.46645 * 60.36538 * 3 2 1 32 32 H 1.09001 * 109.47125 * 180.36305 * 3 2 1 33 33 H 0.96700 * 113.99731 * 179.97438 * 4 3 2 34 34 H 1.08998 * 110.71869 * 215.58986 * 5 2 1 35 35 H 1.08997 * 110.71875 * 338.86288 * 5 2 1 36 36 H 1.09001 * 111.00539 * 153.57820 * 6 5 2 37 37 H 1.09002 * 111.00779 * 277.39072 * 6 5 2 38 38 H 1.09008 * 110.39190 * 204.36562 * 7 6 5 39 39 H 1.08996 * 110.23866 * 82.11083 * 7 6 5 40 40 H 1.08998 * 109.62850 * 248.51921 * 14 13 11 41 41 H 1.08997 * 109.62547 * 9.09809 * 14 13 11 42 42 H 1.08999 * 109.65320 * 294.07662 * 15 14 13 43 43 H 1.09001 * 109.41830 * 173.94666 * 15 14 13 44 44 H 1.08998 * 109.47383 * 179.77154 * 17 16 15 45 45 H 1.09005 * 109.47010 * 299.76673 * 17 16 15 46 46 H 0.97000 * 120.00391 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.48973 * 303.14562 * 26 16 15 48 48 H 1.08998 * 109.51365 * 183.08125 * 26 16 15 49 49 H 1.09007 * 109.62280 * 350.89862 * 27 13 11 50 50 H 1.08998 * 109.63157 * 111.28322 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5761 2.1184 -1.1625 5 6 2.0549 -0.7496 1.2426 6 6 2.3519 -2.1695 0.6921 7 6 2.8523 -1.8529 -0.7370 8 7 2.0299 -0.7139 -1.1841 9 6 1.7740 -0.3851 -2.4658 10 8 1.0763 0.5753 -2.7181 11 6 2.3450 -1.2063 -3.5762 12 8 3.1398 -2.0898 -3.3308 13 7 1.9771 -0.9657 -4.8502 14 6 2.5065 -1.7792 -5.9554 15 6 1.3214 -2.2767 -6.7982 16 7 0.5036 -1.1279 -7.2098 17 6 -0.5387 -1.5374 -8.1606 18 6 -1.4316 -2.5656 -7.5153 19 1 -1.1994 -2.9397 -6.5291 20 6 -2.5449 -3.0287 -8.1838 21 7 -2.8274 -2.5736 -9.3848 22 14 -3.6513 -4.3038 -7.3841 23 1 -3.1181 -4.6500 -6.0419 24 1 -5.0226 -3.7513 -7.2440 25 1 -3.6931 -5.5235 -8.2302 26 6 -0.0824 -0.4472 -6.0474 27 6 1.0404 0.1213 -5.1731 28 1 -0.3633 -1.0277 -0.0064 29 1 -0.3633 0.5082 0.8934 30 1 -0.3635 0.5194 -0.8866 31 1 1.6999 1.9530 0.8933 32 1 3.1431 1.4279 -0.0065 33 1 1.8692 3.0375 -1.2281 34 1 2.9657 -0.2831 1.6181 35 1 1.2920 -0.7892 2.0200 36 1 3.1272 -2.6619 1.2792 37 1 1.4454 -2.7739 0.6607 38 1 2.6997 -2.7110 -1.3917 39 1 3.9059 -1.5744 -0.7145 40 1 3.1692 -1.1722 -6.5721 41 1 3.0545 -2.6312 -5.5529 42 1 0.7141 -2.9627 -6.2078 43 1 1.6966 -2.7915 -7.6827 44 1 -1.1320 -0.6686 -8.4458 45 1 -0.0728 -1.9663 -9.0479 46 1 -3.6105 -2.8997 -9.8553 47 1 -0.6702 -1.1587 -5.4674 48 1 -0.7256 0.3646 -6.3869 49 1 0.6186 0.5265 -4.2532 50 1 1.5656 0.9091 -5.7131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601462191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -74.316480 kcal Electronic energy + Delta-G solvation = -31887.860472 eV Core-core repulsion = 27723.561176 eV Total energy + Delta-G solvation = -4164.299295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06988 -39.54985 -37.64033 -37.50043 -36.32612 -34.39486 -32.35066 -32.15787 -31.53393 -30.56221 -28.29804 -26.91408 -25.96810 -25.30371 -24.40234 -23.12833 -22.33622 -21.90686 -20.73373 -19.32604 -18.54704 -17.41682 -16.94692 -16.78316 -16.53675 -16.13929 -15.70433 -15.46654 -14.80109 -14.73350 -14.48794 -14.32129 -14.09386 -13.91843 -13.64752 -13.55069 -13.35223 -13.01809 -12.75904 -12.63203 -12.55505 -12.36591 -12.05218 -11.86878 -11.80278 -11.51329 -11.25863 -11.11644 -11.01343 -10.95565 -10.94223 -10.71866 -10.56282 -10.46679 -10.18029 -10.04533 -9.88469 -9.62961 -8.82006 -8.64657 -8.43185 -8.41013 -7.20196 -6.03767 -4.12956 1.67164 2.33856 3.25906 3.34075 3.38058 3.41212 3.49428 3.91172 4.12301 4.38677 4.40157 4.47025 4.66551 4.81226 4.90394 5.03926 5.07565 5.11129 5.24613 5.26730 5.36231 5.37465 5.49818 5.58860 5.60094 5.61601 5.71782 5.75370 5.80995 5.86647 5.87678 6.01836 6.04457 6.10878 6.29791 6.41319 6.55165 6.67735 6.71381 6.80747 7.23741 7.25823 7.51296 7.53906 7.57698 7.88704 7.93276 8.01991 8.22587 8.24681 8.28564 8.97336 9.54281 11.01283 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003170 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.616518 B = 8830.456638 C = 9188.214084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 C 0.070 3.930 4 O -0.532 6.532 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.100 3.900 8 N -0.587 5.587 9 C 0.522 3.478 10 O -0.463 6.463 11 C 0.504 3.496 12 O -0.538 6.538 13 N -0.568 5.568 14 C 0.111 3.889 15 C 0.052 3.948 16 N -0.543 5.543 17 C 0.187 3.813 18 C -0.549 4.549 19 H 0.056 0.944 20 C 0.066 3.934 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.053 3.947 27 C 0.058 3.942 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.366 0.634 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.029 0.971 46 H 0.262 0.738 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.149 0.851 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.244 6.552 22.257 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.080 3.920 3 C -0.009 4.009 4 O -0.336 6.336 5 C -0.161 4.161 6 C -0.174 4.174 7 C -0.022 4.022 8 N -0.323 5.323 9 C 0.305 3.695 10 O -0.337 6.337 11 C 0.286 3.714 12 O -0.417 6.417 13 N -0.300 5.300 14 C -0.011 4.011 15 C -0.078 4.078 16 N -0.267 5.267 17 C 0.062 3.938 18 C -0.588 4.588 19 H 0.074 0.926 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.076 4.076 27 C -0.063 4.063 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.212 0.788 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.096 0.904 49 H 0.165 0.835 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.153 6.379 21.615 25.605 hybrid contribution -0.961 -0.873 0.733 1.491 sum 11.192 5.505 22.348 25.593 Atomic orbital electron populations 1.22102 0.93154 1.02345 1.03730 1.21130 0.95423 0.90561 0.84857 1.22512 0.97008 0.92268 0.89106 1.86990 1.75980 1.28005 1.42596 1.22688 1.01944 0.95697 0.95751 1.22820 1.02354 0.96447 0.95743 1.22516 0.94679 0.89896 0.95141 1.48290 1.50196 1.29902 1.03881 1.19885 0.81891 0.85150 0.82549 1.90416 1.36224 1.27019 1.80005 1.19987 0.82868 0.84480 0.84057 1.90662 1.34944 1.32930 1.83165 1.48110 1.43886 1.33182 1.04854 1.22095 0.96867 0.95276 0.86877 1.22309 0.93662 0.93471 0.98337 1.62525 1.24949 1.25323 1.13888 1.19769 0.87884 0.95516 0.90679 1.21783 1.09826 1.24334 1.02904 0.92593 1.24949 0.97489 0.96480 0.94783 1.69947 1.27301 1.43279 1.12343 0.86607 0.80714 0.81599 0.79520 1.19931 1.20892 1.20889 1.22235 0.94817 0.98649 0.91942 1.23440 0.90597 0.88113 1.04177 0.92528 0.91953 0.89789 0.93138 0.93998 0.78846 0.90309 0.89478 0.89539 0.90410 0.88442 0.91194 0.90843 0.89427 0.93915 0.90272 0.94642 0.95288 0.92842 0.94273 0.90387 0.83465 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.23 37.16 0.31 -1.33 16 2 C 0.16 1.60 0.79 -130.84 -0.10 1.50 16 3 C 0.07 0.62 5.99 37.16 0.22 0.85 16 4 O -0.53 -5.90 9.42 -59.69 -0.56 -6.46 16 5 C -0.12 -0.80 6.02 -24.90 -0.15 -0.95 16 6 C -0.14 -0.97 7.07 -24.70 -0.17 -1.15 16 7 C 0.10 1.05 5.95 -2.65 -0.02 1.03 16 8 N -0.59 -7.24 2.82 -156.44 -0.44 -7.69 16 9 C 0.52 7.97 7.29 -11.59 -0.08 7.89 16 10 O -0.46 -7.51 8.79 -18.97 -0.17 -7.68 16 11 C 0.50 8.45 7.71 -11.59 -0.09 8.36 16 12 O -0.54 -9.38 13.35 5.50 0.07 -9.31 16 13 N -0.57 -9.80 3.00 -172.69 -0.52 -10.32 16 14 C 0.11 1.87 6.62 -3.36 -0.02 1.85 16 15 C 0.05 1.02 5.18 -3.46 -0.02 1.00 16 16 N -0.54 -11.76 4.83 -235.46 -1.14 -12.90 16 17 C 0.19 4.83 5.11 -4.98 -0.03 4.80 16 18 C -0.55 -15.23 7.76 -34.44 -0.27 -15.50 16 19 H 0.06 1.57 5.88 -52.49 -0.31 1.26 16 20 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 22 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.05 1.07 5.24 -3.70 -0.02 1.05 16 27 C 0.06 0.99 6.35 -3.60 -0.02 0.97 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.08 1.14 6.33 -51.93 -0.33 0.81 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.37 2.62 9.12 45.56 0.42 3.03 16 34 H 0.08 0.41 7.85 -51.93 -0.41 0.01 16 35 H 0.09 0.45 7.83 -51.93 -0.41 0.05 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 1.21 6.36 -51.92 -0.33 0.88 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 42 H 0.04 0.94 6.64 -51.93 -0.34 0.60 16 43 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 44 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.04 0.88 7.09 -51.93 -0.37 0.51 16 48 H 0.08 1.57 8.06 -51.93 -0.42 1.15 16 49 H 0.15 2.55 3.92 -56.50 -0.22 2.33 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -32.63 379.19 -9.17 -41.80 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.29 Total: 3.52 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -0.56 Total: 12.14 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -1.36 Total: -56.43 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.66 Total: -23.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.63 -9.17 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.516 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds