Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.99601 * 2 1 4 4 O 1.42898 * 109.47239 * 300.36363 * 3 2 1 5 5 C 1.54322 * 109.88873 * 121.09928 * 2 1 3 6 6 C 1.55157 * 102.93963 * 97.22358 * 5 2 1 7 7 C 1.54689 * 101.67775 * 35.34072 * 6 5 2 8 8 N 1.47026 * 109.87931 * 238.91234 * 2 1 3 9 9 C 1.34771 * 125.65152 * 59.48279 * 8 2 1 10 10 O 1.21358 * 119.99900 * 0.02562 * 9 8 2 11 11 C 1.49449 * 120.00133 * 180.27695 * 9 8 2 12 12 O 1.21347 * 119.99977 * 352.98163 * 11 9 8 13 13 N 1.34773 * 119.99983 * 172.98852 * 11 9 8 14 14 C 1.47086 * 120.88017 * 181.21662 * 13 11 9 15 15 C 1.53691 * 108.27479 * 128.75144 * 14 13 11 16 16 N 1.46904 * 109.25935 * 54.08585 * 15 14 13 17 17 C 1.46898 * 111.00174 * 172.60736 * 16 15 14 18 18 C 1.50704 * 109.47455 * 59.76801 * 17 16 15 19 19 H 1.07999 * 119.99860 * 355.26202 * 18 17 16 20 20 C 1.37870 * 120.00004 * 175.25959 * 18 17 16 21 21 N 1.31510 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47031 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47137 * 119.99929 * 22 20 18 25 25 H 1.48497 * 109.47310 * 240.00523 * 22 20 18 26 26 C 1.46905 * 111.26522 * 296.75265 * 16 15 14 27 27 C 1.47081 * 120.88546 * 1.49092 * 13 11 9 28 28 H 1.09001 * 109.46767 * 179.64312 * 1 2 3 29 29 H 1.09010 * 109.46692 * 299.63352 * 1 2 3 30 30 H 1.08992 * 109.48032 * 59.63764 * 1 2 3 31 31 H 1.08999 * 109.46645 * 60.36538 * 3 2 1 32 32 H 1.09001 * 109.47125 * 180.36305 * 3 2 1 33 33 H 0.96700 * 113.99731 * 179.97438 * 4 3 2 34 34 H 1.08998 * 110.71869 * 215.58986 * 5 2 1 35 35 H 1.08997 * 110.71875 * 338.86288 * 5 2 1 36 36 H 1.09001 * 111.00539 * 153.57820 * 6 5 2 37 37 H 1.09002 * 111.00779 * 277.39072 * 6 5 2 38 38 H 1.09008 * 110.39190 * 204.36562 * 7 6 5 39 39 H 1.08996 * 110.23866 * 82.11083 * 7 6 5 40 40 H 1.08998 * 109.62850 * 248.51921 * 14 13 11 41 41 H 1.08997 * 109.62547 * 9.09809 * 14 13 11 42 42 H 1.08999 * 109.65320 * 294.07662 * 15 14 13 43 43 H 1.09001 * 109.41830 * 173.94666 * 15 14 13 44 44 H 1.08998 * 109.47383 * 179.77154 * 17 16 15 45 45 H 1.09005 * 109.47010 * 299.76673 * 17 16 15 46 46 H 0.97000 * 120.00391 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.48973 * 303.14562 * 26 16 15 48 48 H 1.08998 * 109.51365 * 183.08125 * 26 16 15 49 49 H 1.09007 * 109.62280 * 350.89862 * 27 13 11 50 50 H 1.08998 * 109.63157 * 111.28322 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5761 2.1184 -1.1625 5 6 2.0549 -0.7496 1.2426 6 6 2.3519 -2.1695 0.6921 7 6 2.8523 -1.8529 -0.7370 8 7 2.0299 -0.7139 -1.1841 9 6 1.7740 -0.3851 -2.4658 10 8 1.0763 0.5753 -2.7181 11 6 2.3450 -1.2063 -3.5762 12 8 3.1398 -2.0898 -3.3308 13 7 1.9771 -0.9657 -4.8502 14 6 2.5065 -1.7792 -5.9554 15 6 1.3214 -2.2767 -6.7982 16 7 0.5036 -1.1279 -7.2098 17 6 -0.5387 -1.5374 -8.1606 18 6 -1.4316 -2.5656 -7.5153 19 1 -1.1994 -2.9397 -6.5291 20 6 -2.5449 -3.0287 -8.1838 21 7 -2.8274 -2.5736 -9.3848 22 14 -3.6513 -4.3038 -7.3841 23 1 -3.1181 -4.6500 -6.0419 24 1 -5.0226 -3.7513 -7.2440 25 1 -3.6931 -5.5235 -8.2302 26 6 -0.0824 -0.4472 -6.0474 27 6 1.0404 0.1213 -5.1731 28 1 -0.3633 -1.0277 -0.0064 29 1 -0.3633 0.5082 0.8934 30 1 -0.3635 0.5194 -0.8866 31 1 1.6999 1.9530 0.8933 32 1 3.1431 1.4279 -0.0065 33 1 1.8692 3.0375 -1.2281 34 1 2.9657 -0.2831 1.6181 35 1 1.2920 -0.7892 2.0200 36 1 3.1272 -2.6619 1.2792 37 1 1.4454 -2.7739 0.6607 38 1 2.6997 -2.7110 -1.3917 39 1 3.9059 -1.5744 -0.7145 40 1 3.1692 -1.1722 -6.5721 41 1 3.0545 -2.6312 -5.5529 42 1 0.7141 -2.9627 -6.2078 43 1 1.6966 -2.7915 -7.6827 44 1 -1.1320 -0.6686 -8.4458 45 1 -0.0728 -1.9663 -9.0479 46 1 -3.6105 -2.8997 -9.8553 47 1 -0.6702 -1.1587 -5.4674 48 1 -0.7256 0.3646 -6.3869 49 1 0.6186 0.5265 -4.2532 50 1 1.5656 0.9091 -5.7131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601462191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -98.452359 kcal Electronic energy + Delta-G solvation = -31888.907082 eV Core-core repulsion = 27723.561176 eV Total energy + Delta-G solvation = -4165.345906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17436 -40.69054 -39.06918 -38.74479 -37.09272 -36.05349 -34.34399 -33.09090 -32.33524 -32.05163 -30.08381 -27.67008 -27.59327 -26.32881 -25.72238 -24.58106 -23.94042 -22.93439 -22.01061 -20.67304 -19.67818 -18.61899 -18.21422 -17.94109 -17.83796 -17.43611 -16.92825 -16.69202 -16.52402 -16.04540 -15.79095 -15.57274 -15.40539 -15.21417 -15.00106 -14.79177 -14.36541 -14.30319 -13.98593 -13.76134 -13.59193 -13.42400 -13.34504 -13.08270 -12.97418 -12.96676 -12.70482 -12.54812 -12.50886 -12.47506 -12.21203 -12.11253 -11.83564 -11.76012 -11.69010 -11.54744 -11.49455 -10.75850 -10.65257 -9.95155 -9.93702 -9.65024 -9.09750 -8.20290 -6.39507 0.42522 1.22174 1.31215 1.32731 1.44011 2.18296 2.32727 2.32966 3.04700 3.10662 3.29278 3.30860 3.61332 3.74718 3.96848 4.00567 4.07409 4.18117 4.23204 4.28774 4.32588 4.44966 4.48084 4.50681 4.56543 4.61734 4.67060 4.79256 4.83538 4.90527 4.91710 4.93837 4.99093 5.03616 5.11104 5.13464 5.16831 5.25140 5.27501 5.28513 5.37706 5.54562 5.69204 5.94958 6.05316 6.19774 6.31089 6.41188 6.68224 6.80078 7.00156 7.06122 7.31922 8.82576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003170 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.616518 B = 8830.456638 C = 9188.214084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 C 0.069 3.931 4 O -0.561 6.561 5 C -0.112 4.112 6 C -0.127 4.127 7 C 0.093 3.907 8 N -0.583 5.583 9 C 0.515 3.485 10 O -0.478 6.478 11 C 0.499 3.501 12 O -0.546 6.546 13 N -0.577 5.577 14 C 0.121 3.879 15 C 0.055 3.945 16 N -0.538 5.538 17 C 0.200 3.800 18 C -0.558 4.558 19 H 0.048 0.952 20 C 0.016 3.984 21 N -0.922 5.922 22 Si 0.954 3.046 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.057 3.943 27 C 0.075 3.925 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.380 0.620 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.016 0.984 43 H 0.082 0.918 44 H 0.012 0.988 45 H 0.010 0.990 46 H 0.266 0.734 47 H 0.012 0.988 48 H 0.075 0.925 49 H 0.154 0.846 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.198 6.520 25.300 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.069 3.931 3 C -0.010 4.010 4 O -0.367 6.367 5 C -0.150 4.150 6 C -0.165 4.165 7 C -0.029 4.029 8 N -0.318 5.318 9 C 0.298 3.702 10 O -0.354 6.354 11 C 0.283 3.717 12 O -0.425 6.425 13 N -0.310 5.310 14 C -0.001 4.001 15 C -0.074 4.074 16 N -0.261 5.261 17 C 0.074 3.926 18 C -0.597 4.597 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.562 5.562 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.072 4.072 27 C -0.046 4.046 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.227 0.773 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.093 0.907 49 H 0.170 0.830 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.135 6.346 24.702 28.688 hybrid contribution -1.220 -0.863 -0.178 1.505 sum 11.915 5.483 24.525 27.812 Atomic orbital electron populations 1.22048 0.94017 1.01649 1.03200 1.21543 0.94914 0.91629 0.85024 1.22625 0.97317 0.91622 0.89439 1.86951 1.76555 1.29325 1.43884 1.22733 1.03411 0.94404 0.94411 1.22813 1.02856 0.97180 0.93612 1.22645 0.95000 0.88433 0.96801 1.48428 1.49443 1.30300 1.03605 1.19623 0.82242 0.85026 0.83327 1.90390 1.37080 1.27568 1.80326 1.20405 0.82613 0.84452 0.84254 1.90652 1.35258 1.33264 1.83336 1.48181 1.44150 1.33295 1.05334 1.21988 0.95450 0.95944 0.86682 1.22309 0.94045 0.92447 0.98582 1.62475 1.23662 1.25890 1.14123 1.19443 0.88235 0.93961 0.90974 1.21953 1.10423 1.24729 1.02607 0.93370 1.25750 0.98921 0.98453 0.95298 1.70048 1.28033 1.44519 1.13554 0.85571 0.78808 0.79192 0.78485 1.19910 1.20083 1.19913 1.22229 0.95865 0.97739 0.91333 1.23294 0.89657 0.88010 1.03680 0.93223 0.89483 0.93297 0.90494 0.93413 0.77282 0.88166 0.87423 0.86877 0.90900 0.90907 0.90494 0.89033 0.88578 0.96590 0.89950 0.97031 0.97210 0.92452 0.97003 0.90657 0.83039 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.23 71.98 0.59 -2.39 16 2 C 0.15 2.63 0.79 3.95 0.00 2.63 16 3 C 0.07 1.04 5.99 71.98 0.43 1.48 16 4 O -0.56 -11.81 9.42 -125.60 -1.18 -13.00 16 5 C -0.11 -1.03 6.02 31.78 0.19 -0.84 16 6 C -0.13 -1.44 7.07 31.91 0.23 -1.21 16 7 C 0.09 1.81 5.95 86.78 0.52 2.33 16 8 N -0.58 -13.77 2.82 -767.22 -2.16 -15.93 16 9 C 0.51 15.65 7.29 87.27 0.64 16.29 16 10 O -0.48 -15.57 8.79 20.11 0.18 -15.39 16 11 C 0.50 16.70 7.71 87.27 0.67 17.37 16 12 O -0.55 -18.85 13.35 -3.24 -0.04 -18.90 16 13 N -0.58 -19.85 3.00 -818.63 -2.46 -22.31 16 14 C 0.12 4.05 6.62 86.50 0.57 4.62 16 15 C 0.06 2.24 5.18 86.54 0.45 2.69 16 16 N -0.54 -23.95 4.83 -898.86 -4.34 -28.29 16 17 C 0.20 10.76 5.11 85.56 0.44 11.19 16 18 C -0.56 -31.85 7.76 25.60 0.20 -31.65 16 19 H 0.05 2.79 5.88 -2.91 -0.02 2.77 16 20 C 0.02 0.90 5.46 84.65 0.46 1.36 16 21 N -0.92 -55.34 13.29 21.44 0.28 -55.05 16 22 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.06 2.39 5.24 86.38 0.45 2.85 16 27 C 0.07 2.58 6.35 86.35 0.55 3.13 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 1.33 6.33 -2.39 -0.02 1.31 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.38 5.03 9.12 -74.06 -0.68 4.36 16 34 H 0.10 0.56 7.85 -2.39 -0.02 0.54 16 35 H 0.11 0.62 7.83 -2.39 -0.02 0.60 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.79 6.36 -2.38 -0.02 1.77 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.10 3.07 7.07 -2.39 -0.02 3.05 16 42 H 0.02 0.73 6.64 -2.39 -0.02 0.71 16 43 H 0.08 3.24 8.11 -2.39 -0.02 3.22 16 44 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 45 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.01 0.55 7.09 -2.39 -0.02 0.53 16 48 H 0.08 3.13 8.06 -2.39 -0.02 3.11 16 49 H 0.15 5.31 3.92 -74.88 -0.29 5.01 16 50 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -72.19 379.19 -1.32 -73.51 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.01 Total: 18.41 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 6.39 Total: 29.84 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -8.68 Total: -121.59 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.05 Total: -47.29 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.19 -1.32 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.943 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds