Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.49397 * 2 1 4 4 C 1.53034 * 109.49667 * 239.93487 * 2 1 3 5 5 C 1.53039 * 109.53535 * 178.65062 * 4 2 1 6 6 C 1.53185 * 109.31501 * 61.36530 * 5 4 2 7 7 N 1.46930 * 108.77596 * 305.36296 * 6 5 4 8 8 C 1.34774 * 120.63100 * 233.58554 * 7 6 5 9 9 O 1.21348 * 119.99724 * 185.04077 * 8 7 6 10 10 C 1.49443 * 120.00180 * 5.04717 * 8 7 6 11 11 O 1.21348 * 120.00068 * 85.32274 * 10 8 7 12 12 N 1.34778 * 119.99912 * 265.59854 * 10 8 7 13 13 C 1.47080 * 120.88290 * 354.43306 * 12 10 8 14 14 C 1.53699 * 108.27937 * 128.75194 * 13 12 10 15 15 N 1.46900 * 109.24987 * 54.08376 * 14 13 12 16 16 C 1.46904 * 110.99421 * 172.60954 * 15 14 13 17 17 C 1.50702 * 109.47370 * 59.54279 * 16 15 14 18 18 H 1.07997 * 119.99690 * 355.10575 * 17 16 15 19 19 C 1.37875 * 119.99938 * 175.10268 * 17 16 15 20 20 N 1.31514 * 120.00119 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47423 * 59.99728 * 21 19 17 23 23 H 1.48504 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46910 * 299.99643 * 21 19 17 25 25 C 1.46896 * 111.27445 * 296.75339 * 15 14 13 26 26 C 1.47083 * 120.88277 * 174.70939 * 12 10 8 27 27 C 1.46927 * 118.73407 * 53.85870 * 7 6 5 28 28 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47256 * 300.06565 * 1 2 3 30 30 H 1.09001 * 109.47238 * 60.06694 * 1 2 3 31 31 H 0.96698 * 113.99721 * 59.93421 * 3 2 1 32 32 H 1.09006 * 109.46467 * 58.63147 * 4 2 1 33 33 H 1.09005 * 109.45992 * 298.66613 * 4 2 1 34 34 H 1.09001 * 109.50152 * 301.40939 * 5 4 2 35 35 H 1.09003 * 109.52593 * 181.33059 * 5 4 2 36 36 H 1.08999 * 109.58939 * 185.57964 * 6 5 4 37 37 H 1.09000 * 109.70590 * 65.22360 * 6 5 4 38 38 H 1.09000 * 109.63131 * 248.52308 * 13 12 10 39 39 H 1.09003 * 109.62286 * 9.10071 * 13 12 10 40 40 H 1.08995 * 109.64741 * 294.08377 * 14 13 12 41 41 H 1.08992 * 109.42005 * 173.95101 * 14 13 12 42 42 H 1.08998 * 109.47112 * 179.54871 * 16 15 14 43 43 H 1.09002 * 109.47255 * 299.54489 * 16 15 14 44 44 H 0.97002 * 119.99732 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.49579 * 303.15208 * 25 15 14 46 46 H 1.08994 * 109.49476 * 183.07122 * 25 15 14 47 47 H 1.09004 * 109.62808 * 350.90239 * 26 12 10 48 48 H 1.09002 * 109.62734 * 111.27933 * 26 12 10 49 49 H 1.09004 * 109.58468 * 65.93181 * 27 7 6 50 50 H 1.09002 * 109.58239 * 186.35257 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3472 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5708 -0.6939 -1.2665 6 6 4.1059 -1.4254 -0.0316 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3852 2.1775 9 8 3.7731 0.0216 3.2014 10 6 5.7695 -0.3949 2.0349 11 8 6.3336 0.5358 1.4980 12 7 6.4840 -1.4398 2.4976 13 6 5.8356 -2.5225 3.2529 14 6 6.2355 -3.8622 2.6144 15 7 7.7003 -3.9465 2.5428 16 6 8.1298 -5.2802 2.1015 17 6 7.5528 -5.5687 0.7395 18 1 6.8663 -4.8699 0.2849 19 6 7.9014 -6.7248 0.0740 20 7 8.7370 -7.5760 0.6279 21 14 7.1867 -7.0821 -1.6145 22 1 7.5701 -5.9978 -2.5539 23 1 7.7148 -8.3780 -2.1115 24 1 5.7064 -7.1548 -1.5201 25 6 8.2523 -2.9006 1.6714 26 6 7.9340 -1.5246 2.2659 27 6 2.0418 -0.7287 1.2518 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3634 0.5128 -0.8906 31 1 1.7210 1.8656 0.7645 32 1 1.6577 -0.2242 -2.1390 33 1 1.6972 -1.7571 -1.2354 34 1 3.9154 0.3401 -1.2547 35 1 3.9339 -1.1880 -2.1677 36 1 5.1902 -1.3227 0.0127 37 1 3.8408 -2.4812 -0.0862 38 1 6.1673 -2.4946 4.2908 39 1 4.7531 -2.4027 3.2082 40 1 5.8177 -3.9286 1.6099 41 1 5.8532 -4.6819 3.2227 42 1 9.2181 -5.3127 2.0494 43 1 7.7776 -6.0287 2.8112 44 1 8.9825 -8.3891 0.1594 45 1 7.8065 -2.9804 0.6799 46 1 9.3327 -3.0231 1.5957 47 1 8.2396 -0.7447 1.5684 48 1 8.4637 -1.3991 3.2103 49 1 1.6096 -1.7283 1.2984 50 1 1.7636 -0.1662 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601464465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -105.172643 kcal Electronic energy + Delta-G solvation = -32013.059639 eV Core-core repulsion = 27847.422320 eV Total energy + Delta-G solvation = -4165.637319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12533 -39.63133 -38.30159 -37.47202 -35.88171 -34.59395 -32.90804 -32.41586 -31.74653 -30.89089 -28.59513 -27.57693 -26.43217 -25.45650 -23.81852 -23.11378 -22.71327 -21.94247 -20.59437 -19.89459 -18.78774 -17.76255 -17.24439 -16.69498 -16.42412 -16.37694 -15.45878 -15.18470 -14.96879 -14.87081 -14.78305 -14.63751 -14.50757 -13.94591 -13.88856 -13.62985 -13.51012 -13.38578 -12.98201 -12.80994 -12.60871 -12.43659 -12.26377 -11.97998 -11.95355 -11.49727 -11.32181 -11.26609 -11.23902 -11.16171 -11.09149 -10.76731 -10.74790 -10.72998 -10.44233 -10.33927 -10.02088 -9.77837 -9.46015 -8.89287 -8.65117 -8.54107 -7.37116 -6.14083 -4.24127 2.08401 2.11600 2.60905 3.19244 3.25878 3.25993 3.26546 3.90208 4.08355 4.29995 4.30181 4.43434 4.46196 4.74281 4.76795 4.88966 5.04509 5.14920 5.16756 5.19239 5.27018 5.32815 5.34827 5.35461 5.46025 5.49173 5.57717 5.63425 5.65249 5.73801 5.77675 5.79788 5.84288 5.96661 6.11819 6.15193 6.29919 6.45487 6.53218 6.58911 6.93954 7.10485 7.25848 7.38459 7.39081 7.69299 7.76737 7.85408 7.89287 8.07564 8.15039 8.84914 9.43469 10.91210 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003865 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.655225 B = 7242.788999 C = 8714.875303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 O -0.550 6.550 4 C -0.105 4.105 5 C -0.132 4.132 6 C 0.104 3.896 7 N -0.587 5.587 8 C 0.524 3.476 9 O -0.523 6.523 10 C 0.515 3.485 11 O -0.520 6.520 12 N -0.589 5.589 13 C 0.108 3.892 14 C 0.052 3.948 15 N -0.540 5.540 16 C 0.188 3.812 17 C -0.554 4.554 18 H 0.055 0.945 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.052 3.948 26 C 0.114 3.886 27 C 0.085 3.915 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.376 0.624 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.030 0.970 44 H 0.264 0.736 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 12.082 -0.583 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 O -0.355 6.355 4 C -0.143 4.143 5 C -0.170 4.170 6 C -0.018 4.018 7 N -0.320 5.320 8 C 0.308 3.692 9 O -0.398 6.398 10 C 0.297 3.703 11 O -0.396 6.396 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.078 4.078 15 N -0.265 5.265 16 C 0.063 3.937 17 C -0.593 4.593 18 H 0.073 0.927 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.078 4.078 26 C -0.008 4.008 27 C -0.037 4.037 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.223 0.777 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.658 12.486 -0.420 18.509 hybrid contribution -0.980 -0.446 -1.284 1.676 sum -14.638 12.040 -1.704 19.030 Atomic orbital electron populations 1.22428 0.94838 1.03143 1.02997 1.21653 0.92630 0.83224 0.95142 1.86585 1.77199 1.22428 1.49304 1.21540 0.96146 0.99998 0.96581 1.21833 0.95356 1.02467 0.97333 1.21895 0.98771 0.97353 0.83803 1.47920 1.06382 1.59359 1.18387 1.20313 0.87942 0.77517 0.83469 1.90764 1.74185 1.46825 1.28051 1.20086 0.87654 0.83227 0.79315 1.90788 1.70569 1.34535 1.43718 1.48265 1.09737 1.20824 1.53485 1.22183 0.96434 0.86609 0.96248 1.22313 0.90958 0.94553 0.99927 1.62487 1.07387 1.06417 1.50169 1.19768 0.96742 0.83214 0.93960 1.21663 1.28192 1.05817 1.03632 0.92654 1.24943 0.94781 0.96093 0.97738 1.69921 1.33379 1.11060 1.38281 0.86726 0.79427 0.77719 0.84568 1.20212 1.21125 1.20274 1.22249 1.00734 0.89494 0.95285 1.21998 0.78150 0.98823 1.01858 1.22513 0.79523 1.02096 0.99597 0.91192 0.91957 0.91271 0.77695 0.90706 0.90265 0.90111 0.90202 0.89645 0.90121 0.90131 0.90801 0.93719 0.90045 0.94537 0.95159 0.92616 0.93801 0.89897 0.89222 0.90665 0.89899 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 8.82 37.16 0.33 -0.76 16 2 C 0.12 0.99 1.01 -90.28 -0.09 0.90 16 3 O -0.55 -5.70 12.18 -35.23 -0.43 -6.13 16 4 C -0.11 -0.91 4.92 -26.69 -0.13 -1.04 16 5 C -0.13 -1.38 5.94 -26.62 -0.16 -1.54 16 6 C 0.10 1.24 6.35 -3.71 -0.02 1.22 16 7 N -0.59 -7.36 2.91 -173.02 -0.50 -7.86 16 8 C 0.52 8.14 5.51 -11.59 -0.06 8.07 16 9 O -0.52 -9.03 16.53 5.50 0.09 -8.94 16 10 C 0.52 8.65 5.48 -11.59 -0.06 8.58 16 11 O -0.52 -9.97 16.58 5.50 0.09 -9.88 16 12 N -0.59 -9.28 3.00 -172.68 -0.52 -9.80 16 13 C 0.11 1.59 6.56 -3.36 -0.02 1.57 16 14 C 0.05 0.89 5.17 -3.46 -0.02 0.87 16 15 N -0.54 -10.44 4.83 -235.47 -1.14 -11.58 16 16 C 0.19 4.46 5.11 -4.97 -0.03 4.44 16 17 C -0.55 -14.06 7.76 -34.44 -0.27 -14.33 16 18 H 0.06 1.38 5.88 -52.49 -0.31 1.07 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 21 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 26 C 0.11 1.76 6.58 -3.60 -0.02 1.74 16 27 C 0.09 0.83 5.39 -3.49 -0.02 0.81 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.38 2.92 9.05 45.56 0.41 3.33 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.18 6.31 -51.93 -0.33 0.86 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.02 6.37 -51.93 -0.33 0.69 16 40 H 0.04 0.83 6.62 -51.93 -0.34 0.48 16 41 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.04 0.85 7.10 -51.93 -0.37 0.48 16 46 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 47 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 0.99 7.03 -51.93 -0.37 0.63 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -31.51 390.66 -8.94 -40.45 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.44 Total: 3.65 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -0.70 Total: 13.13 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -1.42 Total: -53.38 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.25 Total: -24.95 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.51 -8.94 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601464465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.720 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds