Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.52622 * 2 1 4 4 C 1.53036 * 109.49939 * 120.08557 * 2 1 3 5 5 C 1.53038 * 109.54283 * 181.31403 * 4 2 1 6 6 C 1.53191 * 109.31336 * 298.63308 * 5 4 2 7 7 N 1.46928 * 108.77510 * 54.63411 * 6 5 4 8 8 C 1.34771 * 120.63179 * 126.36888 * 7 6 5 9 9 O 1.21349 * 120.00167 * 175.25648 * 8 7 6 10 10 C 1.49445 * 120.00169 * 355.25290 * 8 7 6 11 11 O 1.21350 * 120.00643 * 273.99856 * 10 8 7 12 12 N 1.34780 * 119.99640 * 93.99655 * 10 8 7 13 13 C 1.47075 * 120.88146 * 4.73312 * 12 10 8 14 14 C 1.53695 * 108.27642 * 128.75915 * 13 12 10 15 15 N 1.46896 * 109.26070 * 54.07674 * 14 13 12 16 16 C 1.46898 * 110.99801 * 172.61034 * 15 14 13 17 17 C 1.50696 * 109.47569 * 51.78143 * 16 15 14 18 18 H 1.08001 * 120.00022 * 5.00355 * 17 16 15 19 19 C 1.37876 * 120.00243 * 185.00714 * 17 16 15 20 20 N 1.31513 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46961 * 89.99979 * 21 19 17 23 23 H 1.48500 * 109.47014 * 209.99700 * 21 19 17 24 24 H 1.48497 * 109.46887 * 330.00109 * 21 19 17 25 25 C 1.46889 * 111.27133 * 296.75995 * 15 14 13 26 26 C 1.47086 * 120.88022 * 185.00851 * 12 10 8 27 27 C 1.46927 * 118.73874 * 306.39226 * 7 6 5 28 28 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47243 * 300.08091 * 1 2 3 30 30 H 1.09007 * 109.46960 * 60.07822 * 1 2 3 31 31 H 0.96697 * 114.00544 * 299.91913 * 3 2 1 32 32 H 1.09001 * 109.46046 * 61.28843 * 4 2 1 33 33 H 1.09000 * 109.44617 * 301.33150 * 4 2 1 34 34 H 1.09003 * 109.49698 * 178.67822 * 5 4 2 35 35 H 1.09004 * 109.49573 * 58.58761 * 5 4 2 36 36 H 1.08997 * 109.58672 * 294.84709 * 6 5 4 37 37 H 1.09001 * 109.70088 * 174.48916 * 6 5 4 38 38 H 1.09002 * 109.62659 * 248.52310 * 13 12 10 39 39 H 1.08997 * 109.62952 * 9.10215 * 13 12 10 40 40 H 1.09004 * 109.64294 * 294.07522 * 14 13 12 41 41 H 1.09000 * 109.44244 * 173.96037 * 14 13 12 42 42 H 1.09006 * 109.47363 * 171.78197 * 16 15 14 43 43 H 1.09002 * 109.47487 * 291.77713 * 16 15 14 44 44 H 0.96999 * 119.99544 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.49723 * 303.14429 * 25 15 14 46 46 H 1.08997 * 109.51882 * 183.07464 * 25 15 14 47 47 H 1.08996 * 109.62871 * 350.90209 * 26 12 10 48 48 H 1.09007 * 109.62487 * 111.28100 * 26 12 10 49 49 H 1.08996 * 109.58951 * 173.39783 * 27 7 6 50 50 H 1.09001 * 109.58769 * 293.82077 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 3.5708 -0.6952 1.2659 6 6 4.1053 -1.4268 0.0307 7 7 3.5046 -0.8292 -1.1696 8 6 4.2812 -0.3857 -2.1779 9 8 3.7723 0.0266 -3.1995 10 6 5.7689 -0.4014 -2.0378 11 8 6.3387 0.5308 -1.5097 12 7 6.4780 -1.4512 -2.4981 13 6 5.8203 -2.5426 -3.2326 14 6 6.5889 -2.7731 -4.5434 15 7 8.0087 -2.9967 -4.2398 16 6 8.7485 -3.3939 -5.4451 17 6 8.4777 -2.4051 -6.5495 18 1 7.8873 -1.5227 -6.3515 19 6 8.9834 -2.6270 -7.8129 20 7 9.7026 -3.7014 -8.0539 21 14 8.6469 -1.4016 -9.1821 22 1 9.7202 -0.3755 -9.2028 23 1 8.6162 -2.1121 -10.4858 24 1 7.3370 -0.7431 -8.9462 25 6 8.6135 -1.8116 -3.6175 26 6 7.9290 -1.5387 -2.2739 27 6 2.0413 -0.7238 -1.2497 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5151 0.8892 30 1 -0.3633 0.5127 -0.8907 31 1 1.7238 1.8648 -0.7656 32 1 1.6966 -1.7573 1.2352 33 1 1.6581 -0.2244 2.1387 34 1 3.9333 -1.1899 2.1671 35 1 3.9159 0.3387 1.2541 36 1 3.8375 -2.4819 0.0866 37 1 5.1897 -1.3270 -0.0150 38 1 5.8366 -3.4511 -2.6304 39 1 4.7898 -2.2656 -3.4546 40 1 6.4877 -1.8986 -5.1862 41 1 6.1837 -3.6476 -5.0526 42 1 9.8164 -3.4113 -5.2268 43 1 8.4258 -4.3866 -5.7589 44 1 10.0586 -3.8572 -8.9426 45 1 8.4842 -0.9504 -4.2730 46 1 9.6767 -1.9883 -3.4546 47 1 8.2932 -0.5976 -1.8618 48 1 8.1438 -2.3503 -1.5787 49 1 1.7638 -0.1579 -2.1389 50 1 1.6052 -1.7216 -1.2982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601464466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -103.714375 kcal Electronic energy + Delta-G solvation = -31438.936571 eV Core-core repulsion = 27273.362487 eV Total energy + Delta-G solvation = -4165.574084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16078 -39.68890 -38.31569 -37.45948 -35.95343 -34.57511 -32.98751 -32.36747 -31.84529 -30.85845 -28.58995 -27.60442 -26.51514 -25.44417 -23.79120 -23.13576 -22.81006 -21.92424 -20.64744 -19.96713 -18.67196 -17.90836 -17.28433 -16.72723 -16.48605 -16.25887 -15.53728 -15.32817 -14.89868 -14.85970 -14.77842 -14.69930 -14.46716 -13.94960 -13.90370 -13.73903 -13.50513 -13.40441 -13.09244 -12.78683 -12.67532 -12.50843 -12.26083 -12.05125 -11.87611 -11.54920 -11.44032 -11.33816 -11.22916 -11.08638 -11.03581 -10.85105 -10.70913 -10.66024 -10.51748 -10.32922 -9.90096 -9.68740 -9.47909 -8.96754 -8.64354 -8.47747 -7.32240 -6.08244 -4.17450 2.08896 2.09818 2.52507 3.24632 3.26393 3.33304 3.37981 3.82752 4.04325 4.23472 4.34616 4.38188 4.38532 4.60444 4.76355 4.82532 4.98143 5.02350 5.17378 5.20763 5.22048 5.23183 5.27065 5.34405 5.39490 5.43063 5.47573 5.55765 5.62984 5.66244 5.68365 5.74091 5.87924 5.97134 6.00783 6.06156 6.35474 6.54064 6.57176 6.66972 6.87616 7.13743 7.26142 7.32904 7.45821 7.67523 7.82842 7.87991 7.90494 8.12935 8.21905 8.92155 9.50419 10.97067 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.002749 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.985442 B =10184.235198 C =10732.140545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 O -0.551 6.551 4 C -0.104 4.104 5 C -0.133 4.133 6 C 0.106 3.894 7 N -0.590 5.590 8 C 0.523 3.477 9 O -0.514 6.514 10 C 0.515 3.485 11 O -0.520 6.520 12 N -0.589 5.589 13 C 0.107 3.893 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.188 3.812 17 C -0.554 4.554 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.047 3.953 26 C 0.115 3.885 27 C 0.085 3.915 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.377 0.623 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.263 0.737 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 1.850 20.045 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.073 3.927 3 O -0.356 6.356 4 C -0.142 4.142 5 C -0.171 4.171 6 C -0.016 4.016 7 N -0.325 5.325 8 C 0.306 3.694 9 O -0.388 6.388 10 C 0.297 3.703 11 O -0.396 6.396 12 N -0.323 5.323 13 C -0.016 4.016 14 C -0.077 4.077 15 N -0.265 5.265 16 C 0.063 3.937 17 C -0.592 4.592 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.083 4.083 26 C -0.007 4.007 27 C -0.037 4.037 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.610 1.880 20.504 26.455 hybrid contribution -0.459 1.449 -2.151 2.634 sum -17.069 3.329 18.353 25.284 Atomic orbital electron populations 1.22430 0.94814 1.03104 1.03095 1.21576 0.92681 0.83350 0.95108 1.86569 1.77280 1.22466 1.49334 1.21526 0.96068 0.99901 0.96687 1.21844 0.95448 1.02626 0.97145 1.21841 0.98686 0.97071 0.84029 1.47913 1.06351 1.59842 1.18386 1.20361 0.87949 0.77613 0.83450 1.90805 1.74003 1.45914 1.28078 1.20072 0.87649 0.83165 0.79368 1.90790 1.70174 1.34396 1.44215 1.48280 1.09529 1.20515 1.53999 1.22208 0.96050 0.89065 0.94292 1.22283 0.90001 1.02021 0.93351 1.62514 1.01724 1.31797 1.30427 1.19769 0.93400 0.96323 0.84195 1.21745 1.33832 1.08158 0.95511 0.92484 1.24942 0.94760 0.95263 0.98631 1.69936 1.34630 1.26177 1.22069 0.86650 0.78857 0.81371 0.81543 1.20580 1.21060 1.19858 1.22282 0.98547 0.93967 0.93484 1.21967 0.77650 1.02528 0.98583 1.22420 0.79562 1.02068 0.99699 0.91231 0.91253 0.91895 0.77499 0.90365 0.90718 0.90344 0.90048 0.90472 0.89722 0.90384 0.90611 0.93216 0.89896 0.95325 0.94414 0.92740 0.93961 0.90028 0.89191 0.90516 0.88432 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 8.82 37.16 0.33 -0.60 16 2 C 0.11 0.85 1.01 -90.50 -0.09 0.76 16 3 O -0.55 -5.31 12.18 -35.23 -0.43 -5.74 16 4 C -0.10 -0.69 4.92 -26.69 -0.13 -0.82 16 5 C -0.13 -1.05 5.94 -26.61 -0.16 -1.21 16 6 C 0.11 0.95 6.36 -3.71 -0.02 0.93 16 7 N -0.59 -6.61 2.91 -173.27 -0.50 -7.12 16 8 C 0.52 8.02 5.64 -11.59 -0.07 7.96 16 9 O -0.51 -9.32 16.35 5.50 0.09 -9.23 16 10 C 0.52 8.61 5.48 -11.59 -0.06 8.54 16 11 O -0.52 -9.96 16.55 5.50 0.09 -9.87 16 12 N -0.59 -9.25 3.00 -172.69 -0.52 -9.77 16 13 C 0.11 1.58 6.51 -3.37 -0.02 1.56 16 14 C 0.05 0.99 5.02 -3.47 -0.02 0.97 16 15 N -0.54 -10.92 4.83 -235.48 -1.14 -12.06 16 16 C 0.19 4.66 5.19 -4.98 -0.03 4.63 16 17 C -0.55 -15.02 7.81 -34.44 -0.27 -15.28 16 18 H 0.06 1.57 5.90 -52.49 -0.31 1.26 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.05 0.86 5.35 -3.71 -0.02 0.84 16 26 C 0.11 1.76 6.61 -3.60 -0.02 1.73 16 27 C 0.09 0.74 5.35 -3.71 -0.02 0.72 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.38 2.81 9.05 45.56 0.41 3.22 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.87 7.61 -51.93 -0.40 0.47 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.88 6.31 -51.93 -0.33 0.55 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.09 6.31 -51.93 -0.33 0.76 16 40 H 0.05 1.09 6.42 -51.93 -0.33 0.75 16 41 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.90 7.41 -51.93 -0.38 0.51 16 46 H 0.08 1.45 7.96 -51.93 -0.41 1.04 16 47 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 48 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 49 H 0.10 0.97 7.03 -51.93 -0.37 0.60 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -33.71 390.37 -8.94 -42.65 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.43 Total: 1.19 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.70 Total: 12.52 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -1.42 Total: -54.00 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.25 Total: -24.84 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.71 -8.94 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601464466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.067 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds