Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.52622 * 2 1 4 4 C 1.53036 * 109.49939 * 120.08557 * 2 1 3 5 5 C 1.53038 * 109.54283 * 181.31403 * 4 2 1 6 6 C 1.53191 * 109.31336 * 298.63308 * 5 4 2 7 7 N 1.46928 * 108.77510 * 54.63411 * 6 5 4 8 8 C 1.34771 * 120.63179 * 126.36888 * 7 6 5 9 9 O 1.21349 * 120.00167 * 175.25648 * 8 7 6 10 10 C 1.49445 * 120.00169 * 355.25290 * 8 7 6 11 11 O 1.21350 * 120.00643 * 273.99856 * 10 8 7 12 12 N 1.34780 * 119.99640 * 93.99655 * 10 8 7 13 13 C 1.47075 * 120.88146 * 4.73312 * 12 10 8 14 14 C 1.53695 * 108.27642 * 128.75915 * 13 12 10 15 15 N 1.46896 * 109.26070 * 54.07674 * 14 13 12 16 16 C 1.46898 * 110.99801 * 172.61034 * 15 14 13 17 17 C 1.50696 * 109.47569 * 51.78143 * 16 15 14 18 18 H 1.08001 * 120.00022 * 5.00355 * 17 16 15 19 19 C 1.37876 * 120.00243 * 185.00714 * 17 16 15 20 20 N 1.31513 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46961 * 89.99979 * 21 19 17 23 23 H 1.48500 * 109.47014 * 209.99700 * 21 19 17 24 24 H 1.48497 * 109.46887 * 330.00109 * 21 19 17 25 25 C 1.46889 * 111.27133 * 296.75995 * 15 14 13 26 26 C 1.47086 * 120.88022 * 185.00851 * 12 10 8 27 27 C 1.46927 * 118.73874 * 306.39226 * 7 6 5 28 28 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47243 * 300.08091 * 1 2 3 30 30 H 1.09007 * 109.46960 * 60.07822 * 1 2 3 31 31 H 0.96697 * 114.00544 * 299.91913 * 3 2 1 32 32 H 1.09001 * 109.46046 * 61.28843 * 4 2 1 33 33 H 1.09000 * 109.44617 * 301.33150 * 4 2 1 34 34 H 1.09003 * 109.49698 * 178.67822 * 5 4 2 35 35 H 1.09004 * 109.49573 * 58.58761 * 5 4 2 36 36 H 1.08997 * 109.58672 * 294.84709 * 6 5 4 37 37 H 1.09001 * 109.70088 * 174.48916 * 6 5 4 38 38 H 1.09002 * 109.62659 * 248.52310 * 13 12 10 39 39 H 1.08997 * 109.62952 * 9.10215 * 13 12 10 40 40 H 1.09004 * 109.64294 * 294.07522 * 14 13 12 41 41 H 1.09000 * 109.44244 * 173.96037 * 14 13 12 42 42 H 1.09006 * 109.47363 * 171.78197 * 16 15 14 43 43 H 1.09002 * 109.47487 * 291.77713 * 16 15 14 44 44 H 0.96999 * 119.99544 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.49723 * 303.14429 * 25 15 14 46 46 H 1.08997 * 109.51882 * 183.07464 * 25 15 14 47 47 H 1.08996 * 109.62871 * 350.90209 * 26 12 10 48 48 H 1.09007 * 109.62487 * 111.28100 * 26 12 10 49 49 H 1.08996 * 109.58951 * 173.39783 * 27 7 6 50 50 H 1.09001 * 109.58769 * 293.82077 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 3.5708 -0.6952 1.2659 6 6 4.1053 -1.4268 0.0307 7 7 3.5046 -0.8292 -1.1696 8 6 4.2812 -0.3857 -2.1779 9 8 3.7723 0.0266 -3.1995 10 6 5.7689 -0.4014 -2.0378 11 8 6.3387 0.5308 -1.5097 12 7 6.4780 -1.4512 -2.4981 13 6 5.8203 -2.5426 -3.2326 14 6 6.5889 -2.7731 -4.5434 15 7 8.0087 -2.9967 -4.2398 16 6 8.7485 -3.3939 -5.4451 17 6 8.4777 -2.4051 -6.5495 18 1 7.8873 -1.5227 -6.3515 19 6 8.9834 -2.6270 -7.8129 20 7 9.7026 -3.7014 -8.0539 21 14 8.6469 -1.4016 -9.1821 22 1 9.7202 -0.3755 -9.2028 23 1 8.6162 -2.1121 -10.4858 24 1 7.3370 -0.7431 -8.9462 25 6 8.6135 -1.8116 -3.6175 26 6 7.9290 -1.5387 -2.2739 27 6 2.0413 -0.7238 -1.2497 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5151 0.8892 30 1 -0.3633 0.5127 -0.8907 31 1 1.7238 1.8648 -0.7656 32 1 1.6966 -1.7573 1.2352 33 1 1.6581 -0.2244 2.1387 34 1 3.9333 -1.1899 2.1671 35 1 3.9159 0.3387 1.2541 36 1 3.8375 -2.4819 0.0866 37 1 5.1897 -1.3270 -0.0150 38 1 5.8366 -3.4511 -2.6304 39 1 4.7898 -2.2656 -3.4546 40 1 6.4877 -1.8986 -5.1862 41 1 6.1837 -3.6476 -5.0526 42 1 9.8164 -3.4113 -5.2268 43 1 8.4258 -4.3866 -5.7589 44 1 10.0586 -3.8572 -8.9426 45 1 8.4842 -0.9504 -4.2730 46 1 9.6767 -1.9883 -3.4546 47 1 8.2932 -0.5976 -1.8618 48 1 8.1438 -2.3503 -1.5787 49 1 1.7638 -0.1579 -2.1389 50 1 1.6052 -1.7216 -1.2982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601464466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = -130.572086 kcal Electronic energy + Delta-G solvation = -31440.101208 eV Core-core repulsion = 27273.362487 eV Total energy + Delta-G solvation = -4166.738722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27145 -40.71111 -39.46270 -38.89140 -36.76279 -36.19761 -34.39007 -33.71482 -32.48601 -32.24814 -30.18447 -28.52346 -27.51565 -26.93608 -25.08510 -24.65799 -23.56582 -23.37099 -21.76066 -20.97438 -19.88487 -19.11024 -18.44901 -18.24030 -17.81181 -17.37906 -16.82916 -16.35408 -16.24590 -16.04938 -15.86729 -15.74827 -15.58334 -15.46442 -15.20080 -15.03124 -14.65184 -14.37315 -14.10215 -13.85580 -13.76083 -13.60042 -13.16701 -13.11081 -13.05217 -12.98602 -12.77469 -12.63398 -12.59705 -12.45461 -12.25924 -12.09561 -12.06157 -12.02271 -11.82636 -11.64497 -11.44836 -11.17449 -10.72230 -10.64743 -10.00496 -9.81194 -9.13288 -8.21399 -6.39276 0.89053 0.95987 1.30137 1.31234 1.33153 1.42974 2.16298 2.32692 2.96688 3.04386 3.23272 3.28455 3.59197 3.75294 3.80906 3.83608 3.99102 4.00335 4.15218 4.16265 4.28130 4.37284 4.40626 4.46867 4.52442 4.62763 4.65185 4.68719 4.73782 4.80982 4.83033 4.91563 4.98724 5.02891 5.09360 5.12805 5.17485 5.22050 5.27159 5.31298 5.33455 5.40439 5.69938 5.89551 5.90761 6.00374 6.17388 6.38234 6.56715 6.60264 6.75117 6.80291 7.32096 8.81288 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.002749 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.985442 B =10184.235198 C =10732.140545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 O -0.575 6.575 4 C -0.104 4.104 5 C -0.128 4.128 6 C 0.099 3.901 7 N -0.576 5.576 8 C 0.520 3.480 9 O -0.554 6.554 10 C 0.514 3.486 11 O -0.552 6.552 12 N -0.588 5.588 13 C 0.121 3.879 14 C 0.053 3.947 15 N -0.529 5.529 16 C 0.201 3.799 17 C -0.561 4.561 18 H 0.046 0.954 19 C 0.020 3.980 20 N -0.919 5.919 21 Si 0.948 3.052 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.276 1.276 25 C 0.048 3.952 26 C 0.124 3.876 27 C 0.079 3.921 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.382 0.618 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.012 0.988 41 H 0.084 0.916 42 H 0.011 0.989 43 H 0.018 0.982 44 H 0.267 0.733 45 H 0.007 0.993 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.963 0.648 21.927 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.071 3.929 3 O -0.382 6.382 4 C -0.141 4.141 5 C -0.166 4.166 6 C -0.022 4.022 7 N -0.308 5.308 8 C 0.302 3.698 9 O -0.432 6.432 10 C 0.298 3.702 11 O -0.430 6.430 12 N -0.322 5.322 13 C -0.001 4.001 14 C -0.076 4.076 15 N -0.252 5.252 16 C 0.075 3.925 17 C -0.600 4.600 18 H 0.064 0.936 19 C -0.181 4.181 20 N -0.558 5.558 21 Si 0.774 3.226 22 H -0.201 1.201 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.081 4.081 26 C 0.002 3.998 27 C -0.042 4.042 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.030 0.970 41 H 0.103 0.897 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.128 0.872 49 H 0.100 0.900 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.530 0.655 22.434 29.105 hybrid contribution 0.124 1.817 -2.671 3.233 sum -18.406 2.471 19.763 27.120 Atomic orbital electron populations 1.22368 0.92837 1.04371 1.03168 1.21775 0.94120 0.82196 0.94834 1.86552 1.77957 1.23845 1.49862 1.21614 0.94810 1.01471 0.96213 1.21808 0.96630 1.00633 0.97579 1.22137 0.97881 0.98976 0.83243 1.48050 1.07309 1.57759 1.17731 1.20142 0.87397 0.78128 0.84093 1.90788 1.74245 1.48314 1.29844 1.20410 0.88507 0.82594 0.78736 1.90764 1.71021 1.35417 1.45751 1.48363 1.09676 1.20545 1.53597 1.22159 0.95409 0.90140 0.92440 1.22295 0.89549 1.00404 0.95342 1.62465 1.02184 1.32570 1.28008 1.19446 0.92780 0.94896 0.85406 1.21954 1.33365 1.08152 0.96505 0.93585 1.25669 0.94671 0.96884 1.00852 1.70022 1.35469 1.27554 1.22788 0.85713 0.78457 0.79323 0.79150 1.20120 1.19992 1.20110 1.22316 0.99546 0.91745 0.94494 1.21921 0.77237 1.03798 0.96798 1.22718 0.77821 1.03791 0.99894 0.89320 0.91187 0.91881 0.76935 0.87460 0.90403 0.87971 0.93523 0.86831 0.91248 0.86754 0.89786 0.96958 0.89740 0.97115 0.96386 0.92432 0.97466 0.89348 0.89146 0.87193 0.90030 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 8.82 71.98 0.64 -0.68 16 2 C 0.11 1.41 1.01 -10.72 -0.01 1.40 16 3 O -0.57 -10.83 12.18 -148.98 -1.81 -12.65 16 4 C -0.10 -1.02 4.92 30.62 0.15 -0.87 16 5 C -0.13 -1.72 5.94 30.67 0.18 -1.54 16 6 C 0.10 1.50 6.36 86.36 0.55 2.05 16 7 N -0.58 -11.90 2.91 -820.48 -2.39 -14.29 16 8 C 0.52 15.74 5.64 87.27 0.49 16.24 16 9 O -0.55 -20.41 16.35 -3.24 -0.05 -20.46 16 10 C 0.51 17.06 5.48 87.27 0.48 17.54 16 11 O -0.55 -21.40 16.55 -3.25 -0.05 -21.45 16 12 N -0.59 -17.87 3.00 -818.63 -2.46 -20.33 16 13 C 0.12 3.37 6.51 86.50 0.56 3.93 16 14 C 0.05 2.01 5.02 86.54 0.43 2.44 16 15 N -0.53 -21.42 4.83 -898.93 -4.34 -25.76 16 16 C 0.20 10.21 5.19 85.56 0.44 10.65 16 17 C -0.56 -31.24 7.81 25.60 0.20 -31.04 16 18 H 0.05 2.63 5.90 -2.91 -0.02 2.62 16 19 C 0.02 1.10 5.46 84.65 0.46 1.56 16 20 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16 21 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 C 0.05 1.80 5.35 86.38 0.46 2.26 16 26 C 0.12 3.66 6.61 86.35 0.57 4.23 16 27 C 0.08 1.21 5.35 86.37 0.46 1.67 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.38 5.83 9.05 -74.06 -0.67 5.16 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.96 7.61 -2.39 -0.02 0.95 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.30 6.31 -2.39 -0.02 1.29 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.08 2.28 6.31 -2.39 -0.02 2.26 16 40 H 0.01 0.55 6.42 -2.38 -0.02 0.53 16 41 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 42 H 0.01 0.58 7.92 -2.38 -0.02 0.56 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.01 0.31 7.41 -2.39 -0.02 0.29 16 46 H 0.09 3.15 7.96 -2.39 -0.02 3.13 16 47 H 0.09 2.72 7.04 -2.39 -0.02 2.70 16 48 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 49 H 0.08 1.55 7.03 -2.39 -0.02 1.54 16 50 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.14 390.37 -2.45 -78.59 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.28 Total: 13.19 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: 6.07 Total: 29.85 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -8.90 Total: -114.05 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -1.92 Total: -54.56 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.14 -2.45 -78.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601464466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.987 kcal (2) G-P(sol) polarization free energy of solvation -76.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds