Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47199 * 240.00018 * 3 2 1 5 5 H 1.48504 * 109.46711 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47106 * 119.99467 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99787 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99820 * 170.00172 * 10 9 7 12 12 C 1.53240 * 109.33549 * 187.25372 * 11 10 9 13 13 N 1.47080 * 108.52164 * 306.16411 * 12 11 10 14 14 C 1.34772 * 120.88037 * 231.18763 * 13 12 11 15 15 O 1.21281 * 120.00257 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99740 * 180.02562 * 14 13 12 17 17 N 1.46497 * 109.47322 * 180.02562 * 16 14 13 18 18 C 1.47192 * 119.78894 * 89.99751 * 17 16 14 19 19 C 1.52987 * 108.66450 * 108.06791 * 18 17 16 20 20 C 1.51777 * 110.84670 * 86.49121 * 19 18 17 21 21 C 1.51783 * 113.78628 * 292.89959 * 20 19 18 22 22 C 1.53055 * 110.70337 * 66.91738 * 21 20 19 23 23 H 1.09000 * 109.63365 * 34.73936 * 22 21 20 24 24 O 1.42900 * 109.63626 * 155.34023 * 22 21 20 25 25 C 1.33371 * 119.78582 * 270.02398 * 17 16 14 26 26 O 1.21285 * 119.89141 * 0.25351 * 25 17 16 27 27 C 1.47085 * 118.23233 * 51.46581 * 13 12 11 28 28 C 1.46900 * 111.00018 * 294.29820 * 10 9 7 29 29 H 0.96999 * 120.00506 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47428 * 60.00047 * 9 7 2 31 31 H 1.08996 * 109.47168 * 299.99486 * 9 7 2 32 32 H 1.08990 * 109.49724 * 67.29085 * 11 10 9 33 33 H 1.09000 * 109.48790 * 307.20735 * 11 10 9 34 34 H 1.09001 * 109.62402 * 186.45774 * 12 11 10 35 35 H 1.08994 * 109.79276 * 65.97408 * 12 11 10 36 36 H 1.08998 * 109.47642 * 60.00040 * 16 14 13 37 37 H 1.09008 * 109.47110 * 300.00136 * 16 14 13 38 38 H 1.08997 * 109.60522 * 348.30992 * 18 17 16 39 39 H 1.09002 * 109.60529 * 227.81873 * 18 17 16 40 40 H 1.09002 * 109.19620 * 206.83084 * 19 18 17 41 41 H 1.08998 * 109.19235 * 326.15550 * 19 18 17 42 42 H 1.09002 * 108.61591 * 54.09003 * 20 19 18 43 43 H 1.09000 * 108.61957 * 171.85107 * 20 19 18 44 44 H 1.09001 * 109.27816 * 306.57980 * 21 20 19 45 45 H 1.08995 * 109.17365 * 187.18839 * 21 20 19 46 46 H 0.96699 * 114.00200 * 179.00278 * 24 22 21 47 47 H 1.08996 * 109.62831 * 68.25152 * 27 13 12 48 48 H 1.09007 * 109.62043 * 188.83361 * 27 13 12 49 49 H 1.09000 * 109.49362 * 292.70927 * 28 10 9 50 50 H 1.09002 * 109.48848 * 52.76319 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2386 12 6 2.5638 -6.0031 0.4114 13 7 3.4616 -5.9862 -0.7535 14 6 3.7119 -7.1123 -1.4503 15 8 3.1938 -8.1579 -1.1196 16 6 4.6355 -7.0723 -2.6404 17 7 4.7419 -8.4130 -3.2213 18 6 3.8015 -8.8305 -4.2739 19 6 4.5510 -8.8857 -5.6064 20 6 5.2192 -10.2354 -5.7947 21 6 6.3503 -10.5002 -4.8177 22 6 5.8128 -10.6332 -3.3908 23 1 4.8334 -11.1112 -3.4115 24 8 6.7168 -11.4155 -2.6081 25 6 5.6899 -9.2475 -2.7928 26 8 6.4564 -8.8952 -1.9214 27 6 4.0838 -4.7089 -1.1339 28 6 2.9767 -3.6491 -1.2494 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 0.8796 -5.1264 -0.6111 33 1 0.9161 -4.8191 1.1422 34 1 2.0632 -6.9694 0.4739 35 1 3.1400 -5.8299 1.3203 36 1 5.6221 -6.7340 -2.3236 37 1 4.2376 -6.3840 -3.3862 38 1 2.9860 -8.1105 -4.3424 39 1 3.4025 -9.8170 -4.0376 40 1 3.8466 -8.7178 -6.4211 41 1 5.3108 -8.1043 -5.6228 42 1 4.4670 -11.0155 -5.6777 43 1 5.6165 -10.2887 -6.8083 44 1 7.0612 -9.6749 -4.8580 45 1 6.8566 -11.4238 -5.0981 46 1 6.4445 -11.5271 -1.6870 47 1 4.8027 -4.4103 -0.3710 48 1 4.5885 -4.8191 -2.0937 49 1 2.3148 -3.8993 -2.0785 50 1 3.4268 -2.6720 -1.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -104.531635 kcal Electronic energy + Delta-G solvation = -30757.163277 eV Core-core repulsion = 26591.553754 eV Total energy + Delta-G solvation = -4165.609523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08939 -39.75674 -37.64462 -37.08798 -36.74392 -34.45821 -34.23990 -32.49656 -31.09266 -30.66316 -29.30315 -28.04008 -26.01769 -25.24581 -24.22917 -23.28594 -22.14071 -21.24568 -20.73565 -19.59289 -18.63789 -18.00377 -17.63749 -17.34124 -16.53026 -16.36330 -15.87645 -15.37539 -15.08232 -14.83470 -14.70007 -14.49631 -14.43880 -14.12216 -13.94578 -13.78471 -13.65194 -13.42407 -13.32429 -13.05741 -12.46351 -12.28843 -12.27716 -12.06113 -11.91047 -11.64546 -11.34325 -11.33014 -11.27249 -11.12370 -11.02330 -10.90747 -10.81560 -10.66754 -10.59382 -10.07521 -9.92123 -9.67929 -9.34114 -8.93382 -8.55787 -8.47700 -7.38824 -6.10431 -4.12850 2.28258 2.51593 2.62989 3.18233 3.27923 3.32956 3.35255 3.73484 3.97508 4.25601 4.30651 4.34822 4.46922 4.57417 4.69485 4.76084 4.84113 4.88726 4.93781 5.13047 5.13953 5.19964 5.22181 5.25576 5.33033 5.41961 5.46340 5.50152 5.52954 5.59037 5.67797 5.71548 5.79257 5.80457 5.97090 6.03402 6.22720 6.38261 6.40073 6.62182 6.96723 7.16444 7.21777 7.22192 7.47253 7.69246 7.88967 7.96241 8.06672 8.18956 8.42077 8.94060 9.51890 11.00270 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002280 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.474749 B =12277.997254 C =12599.815644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.043 3.957 12 C 0.119 3.881 13 N -0.605 5.605 14 C 0.500 3.500 15 O -0.545 6.545 16 C 0.093 3.907 17 N -0.587 5.587 18 C 0.110 3.890 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.108 4.108 22 C 0.097 3.903 23 H 0.082 0.918 24 O -0.543 6.543 25 C 0.490 3.510 26 O -0.533 6.533 27 C 0.108 3.892 28 C 0.051 3.949 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.387 0.613 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.025 0.975 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 -19.897 -12.585 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.087 4.087 12 C -0.004 4.004 13 N -0.339 5.339 14 C 0.287 3.713 15 O -0.423 6.423 16 C -0.033 4.033 17 N -0.320 5.320 18 C -0.013 4.013 19 C -0.182 4.182 20 C -0.157 4.157 21 C -0.146 4.146 22 C 0.034 3.966 23 H 0.100 0.900 24 O -0.348 6.348 25 C 0.277 3.723 26 O -0.410 6.410 27 C -0.015 4.015 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.235 0.765 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.043 0.957 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.225 -20.109 -12.127 25.230 hybrid contribution -0.693 1.123 -0.044 1.321 sum 8.532 -18.985 -12.172 24.112 Atomic orbital electron populations 1.69943 1.06105 1.27029 1.50597 1.24997 0.94867 0.99375 0.95305 0.86547 0.79431 0.82669 0.78682 1.20250 1.21356 1.20104 1.21093 0.93431 0.89854 1.50613 0.91829 1.19720 0.89961 0.87123 0.96228 1.62070 1.28143 1.02744 1.33160 1.22393 0.94881 0.90491 1.00912 1.21746 0.91691 0.99413 0.87520 1.48235 1.46774 1.08551 1.30383 1.20990 0.82230 0.83543 0.84579 1.90647 1.52145 1.30116 1.69387 1.21426 1.01678 0.85170 0.95054 1.47458 1.31995 1.14024 1.38507 1.21915 0.91537 1.02032 0.85781 1.21877 1.00685 0.98242 0.97373 1.21130 0.97605 0.97525 0.99485 1.21236 0.98795 1.03960 0.90615 1.21902 0.94380 0.87857 0.92448 0.90049 1.86495 1.50582 1.71163 1.26568 1.21441 0.80157 0.88177 0.82535 1.90736 1.42774 1.76518 1.30926 1.22150 0.96285 0.82663 1.00448 1.22411 0.94989 0.99026 0.91411 0.92773 0.99126 0.95009 0.95593 0.90038 0.89556 0.90915 0.86776 0.87303 0.89253 0.90201 0.89931 0.90794 0.91392 0.90754 0.90935 0.89472 0.76458 0.90249 0.90390 0.95679 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.66 8.41 -34.44 -0.29 -13.95 16 8 H 0.06 1.66 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 10 N -0.54 -10.83 4.62 -235.47 -1.09 -11.92 16 11 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 12 C 0.12 1.85 6.60 -3.60 -0.02 1.83 16 13 N -0.61 -8.97 3.00 -172.18 -0.52 -9.49 16 14 C 0.50 7.34 7.77 -10.99 -0.09 7.25 16 15 O -0.55 -9.59 15.88 5.56 0.09 -9.50 16 16 C 0.09 1.03 4.16 -5.19 -0.02 1.01 16 17 N -0.59 -6.18 1.94 -174.60 -0.34 -6.52 16 18 C 0.11 0.79 5.88 -3.67 -0.02 0.77 16 19 C -0.14 -0.73 5.74 -27.36 -0.16 -0.89 16 20 C -0.12 -0.58 5.27 -27.97 -0.15 -0.72 16 21 C -0.11 -0.78 5.35 -27.32 -0.15 -0.93 16 22 C 0.10 0.90 3.18 -27.50 -0.09 0.82 16 23 H 0.08 0.63 6.77 -51.93 -0.35 0.27 16 24 O -0.54 -5.76 12.90 -54.68 -0.71 -6.47 16 25 C 0.49 6.05 6.71 -11.25 -0.08 5.97 16 26 O -0.53 -8.75 16.03 -13.89 -0.22 -8.98 16 27 C 0.11 1.46 6.53 -3.36 -0.02 1.44 16 28 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 34 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.31 7.23 -51.93 -0.38 0.94 16 37 H 0.11 0.90 7.56 -51.92 -0.39 0.50 16 38 H 0.09 0.61 7.92 -51.93 -0.41 0.19 16 39 H 0.08 0.54 6.71 -51.93 -0.35 0.19 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.43 8.05 -51.93 -0.42 0.02 16 42 H 0.07 0.27 7.88 -51.93 -0.41 -0.14 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 45 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.39 3.25 9.04 45.56 0.41 3.66 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.08 0.80 6.02 -51.93 -0.31 0.48 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -35.08 390.63 -9.86 -44.95 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.44 Total: 0.92 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.24 Total: 10.45 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -1.21 Total: -53.11 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.84 Total: -24.95 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.08 -9.86 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.585 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds