Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47066 * 239.99738 * 3 2 1 5 5 H 1.48496 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00095 * 3 2 1 7 7 C 1.37875 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99676 * 294.30516 * 10 9 7 12 12 C 1.53238 * 109.33747 * 172.74743 * 11 10 9 13 13 N 1.47075 * 108.52323 * 53.82834 * 12 11 10 14 14 C 1.34780 * 120.88846 * 128.79687 * 13 12 11 15 15 O 1.21272 * 120.00656 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99165 * 0.02562 * 14 13 12 17 17 N 1.46505 * 109.46621 * 180.02562 * 16 14 13 18 18 C 1.47197 * 119.78202 * 90.00577 * 17 16 14 19 19 C 1.52992 * 108.66439 * 251.95064 * 18 17 16 20 20 C 1.51783 * 110.87462 * 273.54088 * 19 18 17 21 21 C 1.51794 * 113.80928 * 66.99522 * 20 19 18 22 22 C 1.53060 * 110.74796 * 293.17816 * 21 20 19 23 23 H 1.08997 * 109.63626 * 325.22947 * 22 21 20 24 24 O 1.42904 * 109.63307 * 204.82620 * 22 21 20 25 25 C 1.33367 * 119.78361 * 269.72501 * 17 16 14 26 26 O 1.21284 * 119.89421 * 359.71964 * 25 17 16 27 27 C 1.47082 * 118.23640 * 308.81163 * 13 12 11 28 28 C 1.46888 * 111.00033 * 170.00037 * 10 9 7 29 29 H 0.97001 * 119.99343 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47133 * 60.00399 * 9 7 2 31 31 H 1.08996 * 109.47320 * 300.00139 * 9 7 2 32 32 H 1.09000 * 109.48943 * 292.70004 * 11 10 9 33 33 H 1.08993 * 109.49832 * 52.78604 * 11 10 9 34 34 H 1.09000 * 109.62989 * 294.11824 * 12 11 10 35 35 H 1.09005 * 109.62990 * 173.53484 * 12 11 10 36 36 H 1.09003 * 109.47419 * 299.99959 * 16 14 13 37 37 H 1.08995 * 109.47299 * 60.00996 * 16 14 13 38 38 H 1.08994 * 109.60415 * 11.70005 * 18 17 16 39 39 H 1.08993 * 109.60394 * 132.19305 * 18 17 16 40 40 H 1.08995 * 109.19493 * 33.89592 * 19 18 17 41 41 H 1.08991 * 109.19516 * 153.18251 * 19 18 17 42 42 H 1.08998 * 108.61233 * 188.11495 * 20 19 18 43 43 H 1.09001 * 108.61708 * 306.01603 * 20 19 18 44 44 H 1.08996 * 109.22293 * 53.51157 * 21 20 19 45 45 H 1.09009 * 109.21525 * 172.90231 * 21 20 19 46 46 H 0.96695 * 113.99704 * 180.02562 * 24 22 21 47 47 H 1.08999 * 109.63044 * 291.47581 * 27 13 12 48 48 H 1.08998 * 109.78912 * 170.98795 * 27 13 12 49 49 H 1.09008 * 109.49677 * 307.21240 * 28 10 9 50 50 H 1.09002 * 109.49726 * 67.26277 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9766 -3.6491 -1.2504 12 6 4.0788 -4.7078 -1.1386 13 7 3.4614 -5.9862 -0.7545 14 6 3.7113 -7.1124 -1.4516 15 8 3.1932 -8.1578 -1.1210 16 6 4.6347 -7.0723 -2.6419 17 7 4.7407 -8.4129 -3.2231 18 6 3.7999 -8.8300 -4.2756 19 6 2.8282 -9.8540 -3.6859 20 6 3.4031 -11.2562 -3.7703 21 6 4.6206 -11.4732 -2.8900 22 6 5.8035 -10.6374 -3.3849 23 1 5.7795 -10.5770 -4.4729 24 8 7.0280 -11.2423 -2.9644 25 6 5.6923 -9.2455 -2.7990 26 8 6.4687 -8.8881 -1.9384 27 6 2.5636 -6.0032 0.4104 28 6 1.5210 -4.8934 0.2376 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8896 32 1 2.3147 -3.8993 -2.0795 33 1 3.4271 -2.6723 -1.4261 34 1 4.8001 -4.4067 -0.3789 35 1 4.5799 -4.8176 -2.1004 36 1 4.2368 -6.3838 -3.3875 37 1 5.6213 -6.7343 -2.3251 38 1 3.2447 -7.9633 -4.6342 39 1 4.3509 -9.2813 -5.1006 40 1 2.6374 -9.6071 -2.6416 41 1 1.8898 -9.8176 -4.2393 42 1 2.6306 -11.9672 -3.4773 43 1 3.6840 -11.4555 -4.8044 44 1 4.3799 -11.1842 -1.8670 45 1 4.8942 -12.5283 -2.9099 46 1 7.8198 -10.7630 -3.2444 47 1 3.1392 -5.8266 1.3189 48 1 2.0627 -6.9691 0.4762 49 1 0.9158 -4.8191 1.1412 50 1 0.8790 -5.1261 -0.6120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -103.655787 kcal Electronic energy + Delta-G solvation = -31016.077481 eV Core-core repulsion = 26850.505937 eV Total energy + Delta-G solvation = -4165.571543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08784 -39.72018 -37.65043 -37.03158 -36.69761 -34.45313 -34.20580 -32.49152 -31.09403 -30.56814 -29.29127 -28.03642 -25.99031 -25.23214 -24.19367 -23.26296 -22.10990 -21.07335 -20.76768 -19.56419 -18.66348 -18.04211 -17.62966 -17.21959 -16.59661 -16.38838 -15.54961 -15.44651 -15.32822 -14.76572 -14.54642 -14.48309 -14.27951 -14.06720 -13.96191 -13.71651 -13.67018 -13.39312 -13.25780 -13.02659 -12.41723 -12.30077 -12.28529 -12.00211 -11.91100 -11.53407 -11.33697 -11.22623 -11.12002 -11.09663 -10.97368 -10.84806 -10.80397 -10.65448 -10.58999 -9.97488 -9.91061 -9.66596 -9.33872 -8.92699 -8.54928 -8.46779 -7.38432 -6.10390 -4.12781 2.25072 2.56758 2.64929 3.18320 3.27843 3.32931 3.35196 3.76526 4.02491 4.33548 4.34868 4.43318 4.48994 4.59816 4.71024 4.84594 4.89687 4.93786 5.01408 5.14231 5.16706 5.22583 5.25868 5.31379 5.34097 5.47232 5.55877 5.60173 5.64982 5.70849 5.72455 5.80288 5.87083 5.97083 6.05166 6.18241 6.23736 6.38701 6.40402 6.64558 6.97395 7.16805 7.21777 7.21973 7.48934 7.69420 7.89506 7.96512 8.06955 8.22195 8.42291 8.94124 9.51967 11.00325 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.002334 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.073819 B =11996.030519 C =12326.277131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.108 3.892 13 N -0.605 5.605 14 C 0.500 3.500 15 O -0.540 6.540 16 C 0.092 3.908 17 N -0.588 5.588 18 C 0.111 3.889 19 C -0.157 4.157 20 C -0.114 4.114 21 C -0.109 4.109 22 C 0.098 3.902 23 H 0.079 0.921 24 O -0.541 6.541 25 C 0.489 3.511 26 O -0.533 6.533 27 C 0.119 3.881 28 C 0.042 3.958 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.384 0.616 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -19.910 -12.316 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.079 4.079 12 C -0.015 4.015 13 N -0.339 5.339 14 C 0.287 3.713 15 O -0.418 6.418 16 C -0.034 4.034 17 N -0.321 5.321 18 C -0.012 4.012 19 C -0.195 4.195 20 C -0.151 4.151 21 C -0.147 4.147 22 C 0.036 3.964 23 H 0.097 0.903 24 O -0.346 6.346 25 C 0.276 3.724 26 O -0.410 6.410 27 C -0.003 4.003 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.232 0.768 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.357 -20.529 -11.039 24.761 hybrid contribution 0.008 1.523 -0.864 1.751 sum 8.365 -19.006 -11.903 23.934 Atomic orbital electron populations 1.69950 1.06104 1.27016 1.50608 1.24997 0.94869 0.99373 0.95310 0.86547 0.79430 0.82673 0.78677 1.20256 1.21355 1.20105 1.21096 0.93428 0.89861 1.50597 0.91835 1.19718 0.89961 0.87123 0.96222 1.62068 1.28142 1.02755 1.33136 1.22329 0.95059 0.99032 0.91432 1.22046 0.96373 0.82712 1.00380 1.48217 1.46940 1.08453 1.30326 1.20965 0.82243 0.83558 0.84563 1.90598 1.52062 1.29952 1.69152 1.21450 1.01678 0.85078 0.95177 1.47508 1.31939 1.13967 1.38688 1.21932 0.91092 0.99269 0.88885 1.22007 0.98308 0.94067 1.05127 1.21075 0.96936 0.97568 0.99570 1.21229 0.91868 1.00406 1.01160 1.21906 0.87295 0.89340 0.97877 0.90345 1.86549 1.14889 1.52025 1.81151 1.21452 0.80419 0.87689 0.82809 1.90734 1.42867 1.76363 1.31006 1.21733 0.91677 0.99395 0.87527 1.22397 0.94898 0.90503 1.00895 0.92779 0.99119 0.95030 0.95739 0.88351 0.90314 0.90433 0.87355 0.86822 0.89392 0.90404 0.88205 0.90648 0.90934 0.91964 0.90501 0.89704 0.76827 0.90972 0.89499 0.90071 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.66 8.41 -34.44 -0.29 -13.95 16 8 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 9 C 0.19 4.84 4.72 -4.97 -0.02 4.81 16 10 N -0.54 -10.82 4.62 -235.77 -1.09 -11.91 16 11 C 0.05 0.87 5.46 -3.70 -0.02 0.85 16 12 C 0.11 1.46 6.50 -3.61 -0.02 1.44 16 13 N -0.61 -8.90 3.01 -172.46 -0.52 -9.42 16 14 C 0.50 7.23 7.77 -10.98 -0.09 7.14 16 15 O -0.54 -9.19 13.68 5.56 0.08 -9.11 16 16 C 0.09 1.01 4.24 -5.19 -0.02 0.99 16 17 N -0.59 -6.11 1.96 -174.59 -0.34 -6.45 16 18 C 0.11 0.79 5.91 -3.67 -0.02 0.77 16 19 C -0.16 -1.27 5.74 -27.35 -0.16 -1.43 16 20 C -0.11 -0.79 5.28 -27.96 -0.15 -0.93 16 21 C -0.11 -1.00 5.35 -27.31 -0.15 -1.14 16 22 C 0.10 0.92 3.16 -27.49 -0.09 0.83 16 23 H 0.08 0.50 6.77 -51.93 -0.35 0.15 16 24 O -0.54 -5.60 12.90 -54.60 -0.70 -6.30 16 25 C 0.49 5.99 6.73 -11.25 -0.08 5.92 16 26 O -0.53 -8.70 16.04 -13.81 -0.22 -8.93 16 27 C 0.12 1.86 6.59 -3.60 -0.02 1.83 16 28 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.79 6.02 -51.93 -0.31 0.47 16 36 H 0.11 0.87 7.37 -51.93 -0.38 0.49 16 37 H 0.11 1.28 7.23 -51.93 -0.38 0.90 16 38 H 0.09 0.53 7.76 -51.93 -0.40 0.12 16 39 H 0.08 0.37 6.71 -51.93 -0.35 0.03 16 40 H 0.10 1.20 5.70 -51.93 -0.30 0.90 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 44 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 45 H 0.08 0.71 8.10 -51.92 -0.42 0.29 16 46 H 0.38 2.70 9.07 45.56 0.41 3.11 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.35 7.07 -51.93 -0.37 0.98 16 49 H 0.08 1.39 7.99 -51.92 -0.41 0.98 16 50 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 385.87 15.07 5.82 5.82 Total: -1.00 -34.86 385.87 -9.82 -44.68 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.30 Total: 1.67 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.24 Total: 9.30 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.21 Total: -52.98 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.85 Total: -24.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.86 -9.82 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.978 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds