Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47066 * 239.99738 * 3 2 1 5 5 H 1.48496 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00095 * 3 2 1 7 7 C 1.37875 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99676 * 294.30516 * 10 9 7 12 12 C 1.53238 * 109.33747 * 172.74743 * 11 10 9 13 13 N 1.47075 * 108.52323 * 53.82834 * 12 11 10 14 14 C 1.34780 * 120.88846 * 128.79687 * 13 12 11 15 15 O 1.21272 * 120.00656 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99165 * 0.02562 * 14 13 12 17 17 N 1.46505 * 109.46621 * 180.02562 * 16 14 13 18 18 C 1.47197 * 119.78202 * 90.00577 * 17 16 14 19 19 C 1.52992 * 108.66439 * 251.95064 * 18 17 16 20 20 C 1.51783 * 110.87462 * 273.54088 * 19 18 17 21 21 C 1.51794 * 113.80928 * 66.99522 * 20 19 18 22 22 C 1.53060 * 110.74796 * 293.17816 * 21 20 19 23 23 H 1.08997 * 109.63626 * 325.22947 * 22 21 20 24 24 O 1.42904 * 109.63307 * 204.82620 * 22 21 20 25 25 C 1.33367 * 119.78361 * 269.72501 * 17 16 14 26 26 O 1.21284 * 119.89421 * 359.71964 * 25 17 16 27 27 C 1.47082 * 118.23640 * 308.81163 * 13 12 11 28 28 C 1.46888 * 111.00033 * 170.00037 * 10 9 7 29 29 H 0.97001 * 119.99343 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47133 * 60.00399 * 9 7 2 31 31 H 1.08996 * 109.47320 * 300.00139 * 9 7 2 32 32 H 1.09000 * 109.48943 * 292.70004 * 11 10 9 33 33 H 1.08993 * 109.49832 * 52.78604 * 11 10 9 34 34 H 1.09000 * 109.62989 * 294.11824 * 12 11 10 35 35 H 1.09005 * 109.62990 * 173.53484 * 12 11 10 36 36 H 1.09003 * 109.47419 * 299.99959 * 16 14 13 37 37 H 1.08995 * 109.47299 * 60.00996 * 16 14 13 38 38 H 1.08994 * 109.60415 * 11.70005 * 18 17 16 39 39 H 1.08993 * 109.60394 * 132.19305 * 18 17 16 40 40 H 1.08995 * 109.19493 * 33.89592 * 19 18 17 41 41 H 1.08991 * 109.19516 * 153.18251 * 19 18 17 42 42 H 1.08998 * 108.61233 * 188.11495 * 20 19 18 43 43 H 1.09001 * 108.61708 * 306.01603 * 20 19 18 44 44 H 1.08996 * 109.22293 * 53.51157 * 21 20 19 45 45 H 1.09009 * 109.21525 * 172.90231 * 21 20 19 46 46 H 0.96695 * 113.99704 * 180.02562 * 24 22 21 47 47 H 1.08999 * 109.63044 * 291.47581 * 27 13 12 48 48 H 1.08998 * 109.78912 * 170.98795 * 27 13 12 49 49 H 1.09008 * 109.49677 * 307.21240 * 28 10 9 50 50 H 1.09002 * 109.49726 * 67.26277 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9766 -3.6491 -1.2504 12 6 4.0788 -4.7078 -1.1386 13 7 3.4614 -5.9862 -0.7545 14 6 3.7113 -7.1124 -1.4516 15 8 3.1932 -8.1578 -1.1210 16 6 4.6347 -7.0723 -2.6419 17 7 4.7407 -8.4129 -3.2231 18 6 3.7999 -8.8300 -4.2756 19 6 2.8282 -9.8540 -3.6859 20 6 3.4031 -11.2562 -3.7703 21 6 4.6206 -11.4732 -2.8900 22 6 5.8035 -10.6374 -3.3849 23 1 5.7795 -10.5770 -4.4729 24 8 7.0280 -11.2423 -2.9644 25 6 5.6923 -9.2455 -2.7990 26 8 6.4687 -8.8881 -1.9384 27 6 2.5636 -6.0032 0.4104 28 6 1.5210 -4.8934 0.2376 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8896 32 1 2.3147 -3.8993 -2.0795 33 1 3.4271 -2.6723 -1.4261 34 1 4.8001 -4.4067 -0.3789 35 1 4.5799 -4.8176 -2.1004 36 1 4.2368 -6.3838 -3.3875 37 1 5.6213 -6.7343 -2.3251 38 1 3.2447 -7.9633 -4.6342 39 1 4.3509 -9.2813 -5.1006 40 1 2.6374 -9.6071 -2.6416 41 1 1.8898 -9.8176 -4.2393 42 1 2.6306 -11.9672 -3.4773 43 1 3.6840 -11.4555 -4.8044 44 1 4.3799 -11.1842 -1.8670 45 1 4.8942 -12.5283 -2.9099 46 1 7.8198 -10.7630 -3.2444 47 1 3.1392 -5.8266 1.3189 48 1 2.0627 -6.9691 0.4762 49 1 0.9158 -4.8191 1.1412 50 1 0.8790 -5.1261 -0.6120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -129.802798 kcal Electronic energy + Delta-G solvation = -31017.211300 eV Core-core repulsion = 26850.505937 eV Total energy + Delta-G solvation = -4166.705363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98337 -40.86710 -38.99198 -37.85391 -37.51832 -35.97919 -35.00334 -34.40057 -32.40158 -31.27519 -30.45543 -29.51789 -27.30068 -26.30622 -25.03376 -24.58607 -23.79274 -22.22261 -21.62520 -20.53501 -19.75850 -18.83624 -18.49407 -18.42333 -18.31527 -17.48172 -16.76095 -16.50882 -16.48099 -16.19854 -16.02343 -15.44688 -15.36914 -15.29582 -15.13096 -14.82859 -14.48039 -14.39426 -14.23303 -14.07039 -14.01642 -13.57501 -13.20940 -13.10235 -13.02354 -12.79170 -12.72004 -12.58167 -12.40916 -12.33938 -12.22566 -12.13710 -11.89354 -11.80426 -11.66510 -11.47341 -11.30691 -11.01998 -10.60819 -10.52581 -9.81589 -9.79251 -9.06025 -8.20056 -6.30477 1.33817 1.43834 1.46730 1.53129 1.54413 1.76951 2.11049 2.41265 3.12353 3.12565 3.21361 3.31123 3.43844 3.75826 3.84314 3.95069 4.00720 4.02981 4.10344 4.19665 4.22350 4.24447 4.31810 4.34530 4.42471 4.45286 4.50549 4.64535 4.69383 4.73699 4.81124 4.92057 4.94121 5.00849 5.01099 5.15928 5.18543 5.21175 5.23024 5.33034 5.42694 5.56074 5.63848 6.02273 6.20516 6.22805 6.39602 6.55455 6.61853 6.85365 7.02029 7.10797 7.39672 8.90986 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.002334 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.073819 B =11996.030519 C =12326.277131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.210 3.790 10 N -0.543 5.543 11 C 0.051 3.949 12 C 0.118 3.882 13 N -0.610 5.610 14 C 0.495 3.505 15 O -0.570 6.570 16 C 0.093 3.907 17 N -0.584 5.584 18 C 0.103 3.897 19 C -0.156 4.156 20 C -0.109 4.109 21 C -0.107 4.107 22 C 0.102 3.898 23 H 0.121 0.879 24 O -0.561 6.561 25 C 0.481 3.519 26 O -0.585 6.585 27 C 0.128 3.872 28 C 0.048 3.952 29 H 0.264 0.736 30 H -0.038 1.038 31 H 0.002 0.998 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.396 0.604 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.118 -20.226 -15.077 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.084 3.916 10 N -0.268 5.268 11 C -0.078 4.078 12 C -0.004 4.004 13 N -0.344 5.344 14 C 0.283 3.717 15 O -0.449 6.449 16 C -0.034 4.034 17 N -0.315 5.315 18 C -0.017 4.017 19 C -0.194 4.194 20 C -0.147 4.147 21 C -0.144 4.144 22 C 0.039 3.961 23 H 0.139 0.861 24 O -0.368 6.368 25 C 0.270 3.730 26 O -0.466 6.466 27 C 0.005 3.995 28 C -0.081 4.081 29 H 0.073 0.927 30 H -0.020 1.020 31 H 0.020 0.980 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.246 0.754 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.026 -20.862 -13.839 26.968 hybrid contribution -0.574 1.540 0.021 1.644 sum 9.452 -19.323 -13.818 25.566 Atomic orbital electron populations 1.70090 1.07860 1.27973 1.51731 1.25927 0.95679 1.03269 0.94798 0.85428 0.78094 0.77806 0.79249 1.18707 1.21314 1.19508 1.21427 0.93821 0.90679 1.50087 0.91234 1.19351 0.90030 0.88814 0.93412 1.61986 1.27141 1.02502 1.35165 1.22374 0.95551 1.00014 0.89851 1.22055 0.94745 0.80830 1.02777 1.48312 1.46842 1.09202 1.30035 1.21695 0.82130 0.82759 0.85094 1.90608 1.53298 1.30977 1.70013 1.21572 1.00750 0.86447 0.94593 1.47670 1.31695 1.13516 1.38668 1.22284 0.90866 0.99987 0.88608 1.21962 0.99637 0.95060 1.02743 1.21063 0.95817 0.96949 1.00831 1.21235 0.93065 1.00701 0.99447 1.22086 0.86854 0.87263 0.99847 0.86142 1.86511 1.15877 1.52602 1.81772 1.22094 0.80007 0.88767 0.82160 1.90700 1.45007 1.77501 1.33349 1.21523 0.91401 0.98230 0.88322 1.22372 0.95385 0.89916 1.00428 0.92740 1.02003 0.98023 0.95913 0.89358 0.90207 0.86132 0.83599 0.86818 0.87697 0.86884 0.92514 0.88986 0.90759 0.88591 0.94652 0.88988 0.75389 0.90919 0.89590 0.90454 0.96253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.21 13.29 21.45 0.28 -54.93 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.52 -28.20 8.41 25.60 0.22 -27.98 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.83 4.72 85.56 0.40 11.23 16 10 N -0.54 -22.29 4.62 -899.83 -4.16 -26.45 16 11 C 0.05 1.71 5.46 86.38 0.47 2.19 16 12 C 0.12 2.97 6.50 86.35 0.56 3.53 16 13 N -0.61 -17.35 3.01 -817.94 -2.46 -19.81 16 14 C 0.49 13.81 7.77 87.66 0.68 14.49 16 15 O -0.57 -19.55 13.68 -3.01 -0.04 -19.60 16 16 C 0.09 1.80 4.24 85.63 0.36 2.17 16 17 N -0.58 -10.79 1.96 -825.47 -1.62 -12.42 16 18 C 0.10 1.10 5.91 86.24 0.51 1.61 16 19 C -0.16 -2.17 5.74 30.19 0.17 -2.00 16 20 C -0.11 -1.22 5.28 29.80 0.16 -1.07 16 21 C -0.11 -1.83 5.35 30.22 0.16 -1.67 16 22 C 0.10 1.69 3.16 30.10 0.10 1.78 16 23 H 0.12 0.99 6.77 -2.39 -0.02 0.97 16 24 O -0.56 -10.89 12.90 -130.46 -1.68 -12.58 16 25 C 0.48 11.18 6.73 88.11 0.59 11.77 16 26 O -0.59 -19.09 16.04 15.48 0.25 -18.85 16 27 C 0.13 4.03 6.59 86.35 0.57 4.60 16 28 C 0.05 1.73 5.62 86.39 0.49 2.21 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16 31 H 0.00 0.09 7.97 -2.39 -0.02 0.07 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 3.16 6.67 -2.39 -0.02 3.15 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.12 2.01 6.02 -2.38 -0.01 1.99 16 36 H 0.15 1.71 7.37 -2.39 -0.02 1.70 16 37 H 0.11 2.30 7.23 -2.39 -0.02 2.28 16 38 H 0.10 0.80 7.76 -2.39 -0.02 0.78 16 39 H 0.11 0.45 6.71 -2.39 -0.02 0.44 16 40 H 0.06 1.34 5.70 -2.39 -0.01 1.33 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.48 7.87 -2.39 -0.02 0.47 16 44 H 0.03 0.89 7.87 -2.39 -0.02 0.87 16 45 H 0.09 1.42 8.10 -2.38 -0.02 1.40 16 46 H 0.40 5.09 9.07 -74.06 -0.67 4.42 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.09 2.73 7.07 -2.39 -0.02 2.71 16 49 H 0.08 2.78 7.99 -2.38 -0.02 2.76 16 50 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -80.00 385.87 -1.22 -81.22 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.28 Total: 15.36 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 5.90 Total: 23.40 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -7.96 Total: -113.60 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -1.48 Total: -51.02 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -80.00 -1.22 -81.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.581 kcal (2) G-P(sol) polarization free energy of solvation -80.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds