Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99744 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00026 * 3 2 1 6 6 H 1.48503 * 109.46934 * 150.00039 * 3 2 1 7 7 C 1.37875 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00398 * 169.99882 * 10 9 7 12 12 C 1.53238 * 109.34081 * 187.25097 * 11 10 9 13 13 N 1.47079 * 108.52145 * 306.16854 * 12 11 10 14 14 C 1.34772 * 120.88127 * 231.18558 * 13 12 11 15 15 O 1.21347 * 120.00186 * 181.54223 * 14 13 12 16 16 C 1.49450 * 120.00022 * 1.53885 * 14 13 12 17 17 O 1.21350 * 120.00373 * 353.52266 * 16 14 13 18 18 N 1.34784 * 119.99849 * 173.51372 * 16 14 13 19 19 C 1.46498 * 119.99904 * 180.02562 * 18 16 14 20 20 C 1.52989 * 109.47371 * 180.02562 * 19 18 16 21 21 H 1.08998 * 109.49473 * 60.02890 * 20 19 18 22 22 C 1.53093 * 109.48547 * 180.02562 * 20 19 18 23 23 C 1.53177 * 109.16692 * 177.58963 * 22 20 19 24 24 C 1.53177 * 109.03528 * 303.01996 * 23 22 20 25 25 C 1.53099 * 109.16330 * 56.98047 * 24 23 22 26 26 O 1.42904 * 109.41243 * 302.38913 * 25 24 23 27 27 C 1.47080 * 118.23705 * 51.45987 * 13 12 11 28 28 C 1.46900 * 110.99650 * 294.29767 * 10 9 7 29 29 H 0.96995 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47572 * 59.99822 * 9 7 2 31 31 H 1.09002 * 109.47158 * 299.99699 * 9 7 2 32 32 H 1.09003 * 109.49241 * 67.28851 * 11 10 9 33 33 H 1.09003 * 109.49009 * 307.21368 * 11 10 9 34 34 H 1.08998 * 109.62764 * 186.45712 * 12 11 10 35 35 H 1.08999 * 109.62832 * 65.88084 * 12 11 10 36 36 H 0.96993 * 119.99820 * 0.02562 * 18 16 14 37 37 H 1.09005 * 109.47296 * 59.99942 * 19 18 16 38 38 H 1.09002 * 109.47193 * 300.00552 * 19 18 16 39 39 H 1.09005 * 109.51921 * 57.68692 * 22 20 19 40 40 H 1.08996 * 109.57431 * 297.52922 * 22 20 19 41 41 H 1.09000 * 109.54372 * 183.15392 * 23 22 20 42 42 H 1.08998 * 109.54390 * 62.88586 * 23 22 20 43 43 H 1.08996 * 109.52669 * 297.07568 * 24 23 22 44 44 H 1.08999 * 109.57406 * 176.91616 * 24 23 22 45 45 H 1.08997 * 109.47951 * 182.40422 * 25 24 23 46 46 H 1.08995 * 109.49104 * 62.37956 * 25 24 23 47 47 H 1.09003 * 109.62759 * 68.24700 * 27 13 12 48 48 H 1.08999 * 109.62775 * 188.83197 * 27 13 12 49 49 H 1.08995 * 109.49740 * 292.70724 * 28 10 9 50 50 H 1.09003 * 109.49176 * 52.78641 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4114 13 7 3.4616 -5.9862 -0.7535 14 6 3.7119 -7.1123 -1.4504 15 8 4.4770 -7.0858 -2.3919 16 6 3.0471 -8.3937 -1.0636 17 8 2.3755 -8.4484 -0.0544 18 7 3.1935 -9.4887 -1.8358 19 6 2.5415 -10.7446 -1.4570 20 6 2.8665 -11.8212 -2.4943 21 1 3.9452 -11.9711 -2.5372 22 6 2.1847 -13.1336 -2.0990 23 6 2.4650 -14.1893 -3.1729 24 6 1.9773 -13.6659 -4.5274 25 6 2.6672 -12.3328 -4.8289 26 8 2.3911 -11.4063 -3.7765 27 6 4.0838 -4.7090 -1.1340 28 6 2.9767 -3.6491 -1.2494 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 0.8796 -5.1263 -0.6111 33 1 0.9161 -4.8191 1.1423 34 1 2.0633 -6.9694 0.4739 35 1 3.1396 -5.8265 1.3200 36 1 3.7305 -9.4450 -2.6423 37 1 1.4625 -10.5953 -1.4136 38 1 2.9039 -11.0616 -0.4791 39 1 1.1094 -12.9750 -2.0162 40 1 2.5773 -13.4751 -1.1413 41 1 1.9363 -15.1100 -2.9260 42 1 3.5363 -14.3843 -3.2216 43 1 0.8980 -13.5179 -4.4936 44 1 2.2219 -14.3871 -5.3071 45 1 2.2922 -11.9345 -5.7717 46 1 3.7434 -12.4888 -4.9028 47 1 4.8027 -4.4102 -0.3711 48 1 4.5885 -4.8191 -2.0938 49 1 2.3148 -3.8992 -2.0785 50 1 3.4271 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602237923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -95.271239 kcal Electronic energy + Delta-G solvation = -29839.236560 eV Core-core repulsion = 25674.028598 eV Total energy + Delta-G solvation = -4165.207962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93638 -39.95358 -38.67276 -37.55163 -35.57638 -34.23693 -34.14275 -32.37076 -32.00755 -30.71388 -28.55390 -27.77171 -25.80053 -24.88381 -24.08979 -23.04120 -22.44670 -21.66460 -21.00977 -20.47165 -19.37623 -17.66302 -17.06380 -16.96627 -16.44214 -16.27958 -16.07942 -15.80683 -15.28715 -15.01788 -14.74189 -14.71067 -14.51649 -14.41246 -14.04301 -13.79849 -13.56886 -13.45320 -13.25798 -13.04961 -12.76211 -12.70026 -12.32571 -12.00039 -11.81289 -11.61700 -11.39939 -11.27486 -11.22613 -10.93776 -10.84441 -10.77646 -10.70182 -10.56574 -10.52825 -9.98358 -9.87460 -9.50670 -9.33208 -8.92850 -8.55137 -8.42777 -7.27574 -6.03185 -4.05004 1.41274 2.28252 3.16721 3.22827 3.32032 3.38337 3.42453 3.49808 4.12616 4.24628 4.30099 4.33938 4.42231 4.46511 4.58834 4.64895 4.90304 4.91784 5.05079 5.12458 5.18200 5.27029 5.32142 5.36996 5.39650 5.41080 5.48702 5.51302 5.56531 5.64219 5.72276 5.75996 5.83254 5.88420 5.97384 6.33587 6.39614 6.46957 6.54814 6.62488 6.71367 6.94677 7.26621 7.32130 7.40623 7.71986 7.78120 8.00202 8.05820 8.16356 8.51944 9.02280 9.59370 11.07591 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.001898 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.387895 B =14745.793336 C =14827.327078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.042 3.958 12 C 0.059 3.941 13 N -0.569 5.569 14 C 0.503 3.497 15 O -0.535 6.535 16 C 0.513 3.487 17 O -0.510 6.510 18 N -0.695 5.695 19 C 0.126 3.874 20 C 0.078 3.922 21 H 0.068 0.932 22 C -0.148 4.148 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.061 3.939 26 O -0.375 6.375 27 C 0.110 3.890 28 C 0.052 3.948 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.416 0.584 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.025 0.975 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -29.790 -6.354 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.088 4.088 12 C -0.062 4.062 13 N -0.301 5.301 14 C 0.285 3.715 15 O -0.413 6.413 16 C 0.295 3.705 17 O -0.387 6.387 18 N -0.348 5.348 19 C 0.002 3.998 20 C 0.019 3.981 21 H 0.086 0.914 22 C -0.186 4.186 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.016 4.016 26 O -0.294 6.294 27 C -0.012 4.012 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.043 0.957 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.022 -29.430 -5.761 30.587 hybrid contribution 0.073 0.682 -0.983 1.199 sum 6.095 -28.748 -6.744 30.151 Atomic orbital electron populations 1.69960 1.06078 1.26807 1.50877 1.25000 0.94872 0.99353 0.95404 0.86491 0.79804 0.83064 0.78017 1.20755 1.21271 1.19750 1.21148 0.93486 0.89901 1.50216 0.91798 1.19731 0.90032 0.87222 0.96218 1.62118 1.28099 1.02892 1.33158 1.22417 0.95075 0.90456 1.00820 1.23383 0.92192 1.04007 0.86607 1.48179 1.44813 1.07647 1.29472 1.19852 0.83189 0.84920 0.83582 1.90728 1.36652 1.85421 1.28544 1.20342 0.81230 0.85252 0.83702 1.90371 1.39967 1.82857 1.25495 1.45650 1.51684 1.09462 1.27979 1.21537 0.99352 0.81959 0.96929 1.22348 0.98087 0.93488 0.84135 0.91441 1.22131 1.02326 0.94651 0.99538 1.21573 1.01510 0.98332 0.94511 1.22211 1.01761 0.97804 0.97838 1.22602 0.99054 0.89320 0.90636 1.88004 1.80548 1.44886 1.15934 1.22151 0.96152 0.81218 1.01649 1.22410 0.95014 0.98923 0.91355 0.92906 0.99136 0.94971 0.95736 0.89980 0.83501 0.90862 0.74696 0.89912 0.89292 0.90402 0.90301 0.91137 0.91695 0.90866 0.90787 0.88569 0.93030 0.90257 0.89189 0.95664 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 10 N -0.54 -11.66 4.62 -235.46 -1.09 -12.75 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.75 16 12 C 0.06 0.95 6.35 -3.60 -0.02 0.93 16 13 N -0.57 -9.31 3.00 -172.69 -0.52 -9.83 16 14 C 0.50 7.85 7.77 -11.59 -0.09 7.76 16 15 O -0.54 -9.05 15.95 5.50 0.09 -8.97 16 16 C 0.51 6.92 7.81 -11.58 -0.09 6.83 16 17 O -0.51 -7.46 13.03 5.50 0.07 -7.39 16 18 N -0.69 -7.33 5.44 -60.73 -0.33 -7.66 16 19 C 0.13 1.02 5.37 -4.05 -0.02 1.00 16 20 C 0.08 0.51 2.73 -26.69 -0.07 0.43 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 22 C -0.15 -0.74 5.42 -26.59 -0.14 -0.89 16 23 C -0.12 -0.53 6.03 -26.55 -0.16 -0.69 16 24 C -0.16 -0.75 6.14 -26.59 -0.16 -0.92 16 25 C 0.06 0.36 6.84 37.21 0.25 0.61 16 26 O -0.37 -3.13 10.15 -35.23 -0.36 -3.49 16 27 C 0.11 1.84 6.62 -3.36 -0.02 1.82 16 28 C 0.05 1.03 5.47 -3.46 -0.02 1.01 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.89 7.97 -51.93 -0.41 0.48 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 34 H 0.15 2.29 3.92 -56.54 -0.22 2.07 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.42 4.22 7.84 -40.82 -0.32 3.90 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -32.32 394.24 -9.82 -42.14 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.36 Total: 0.75 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.98 Total: 10.65 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -1.20 Total: -56.21 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.20 Total: -19.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.32 -9.82 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602237923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.134 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds